CF833897

Overview
NameCF833897
Unique NameCF833897
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF833897_ssr90 microsatellite CF833897_ssr90:90..104. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7563 contig Csv1_Contig7563:424..1224. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF833897 vs. ExPASy Swiss-Prot
Match: LBD37_ARATH (LOB domain-containing protein 37 OS=Arabidopsis thaliana GN=LBD37 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.852e-23
Identity = 74/173 (42.77%), Postives = 89/173 (51.45%), Query Frame = -2 
Query:  333 GLLWTGNWHVCQAAVETVLRGGTLRPVPELLNSCG---GSPTPTSDDVSEAEVTCTDMSRLQDXXXXXXXXXXXXXXXXXXXXXXXXVEE-------SAMKLQQSDLDLRLTPRFTGK--VPPEVRRRPGTPSMNSEESGTTT-----CFESGLTDHRYLNGAEERKLLNLFV 800
            G+LWTGNW++CQAAVETVLRGG+LRP+PELL   G   G P+PTS++ SE    CT+M  LQ                                   S+     S+LDL L P F  K   P   RRR  TPSMNSE+SGTTT     C +  +  +    G E  KLLNLFV
Sbjct:   84 GMLWTGNWNICQAAVETVLRGGSLRPIPELLTHGGGFAGFPSPTSEEASE---ICTEMLNLQQNDSTDRNIYHHSRFSSSRSRSTMDSSSPTKRKRLSSEDQPSSELDLSLIPNFPIKQATPSSTRRRSVTPSMNSEDSGTTTTTTAFCDKGDVYGN---GGGETTKLLNLFV 250
[Close]
BLAST of CF833897 vs. ExPASy Swiss-Prot
Match: LBD38_ARATH (LOB domain-containing protein 38 OS=Arabidopsis thaliana GN=LBD38 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.956e-21
Identity = 70/169 (41.42%), Postives = 86/169 (50.89%), Query Frame = -2 
Query:  336 GLLWTGNWHVCQAAVETVLRGGTLRPVPELLNSCG--GSPTPTSDDVSEAEVTCTDMSRLQDXXXXXXXXXXXXXXXXXXXXXXXXVEE-------SAMKLQQSDLDLRLTPRFTGKVPPEVRRRPGTPSMNSEESGTTTCFESGLTDHRYL-----NGAEERKLLNLF 800
            GLLWTGNW+VCQAAVETVLRGG+L+P+PELLN  G  G P+PTSD+ SE    CT+M  L+                                   S+ +   S+LDL L P +  K  P    +  TPSM SEES TT  F++     RY+      G    KLLNLF
Sbjct:   84 GLLWTGNWNVCQAAVETVLRGGSLKPIPELLNGGGFAGFPSPTSDEASE---ICTEMLNLRKADDSGDRNIYHHCRFSSSRSRSRSTASPPKRKRLSSEQQPSSELDLSLIPIYPIKTLP---FKEDTPSMYSEESVTTVSFQNNNAGDRYVRCGGGGGGATTKLLNLF 246
The following BLAST results are available for this feature:
BLAST of CF833897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
LBD37_ARATH1.852e-2342.77LOB domain-containing protein 37 OS=Arabidopsis th... [more]
LBD38_ARATH2.956e-2141.42LOB domain-containing protein 38 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_04H19_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04H19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833897 ID=CF833897; Name=CF833897; organism=Citrus sinensis; type=EST; length=801bp
TTTTTTTTTTTTTTTTTAATCGGCAATAATTTCATTTTATTCATGCCCTA
TACATAACTAAACACATAATAAAAATTTATTAAAAACCCAAAAGAAAAGA
AAAGAAAAAGAGAGTCATCACCGACAAATTCACCTTCCTCTCTTCCCGTT
TGGATAAATCAAAGAGAGAAATCCTCTGACGGTAATTATACAAAAACTCG
CCGGAATCAGTTTCCGGGAAAATTCTCTCAAAAGTAAACCAAAAACTAAG
GATAATAGTACAACTCTTCTTCGGGAACATAAATTCACAGAGTTAAAAGT
GGAAGAAACTAATTAAGGATAATATTTGCTCAAACGAACAAGTTGAGTAA
TTTCCTCTCCTCAGCTCCATTGAGATATCGATGATCTGTTAACCCACTTT
CGAAGCACGTAGTGGTGCCTGATTCCTCCGAATTCATCGACGGAGTACCA
GGTCGCCGCCTGACTTCCGGCGGAACCTTGCCCGTAAACCTTGGCGTCAA
GCGAAGATCCAGATCTGACTGTTGCAATTTCATTGCTGATTCTTCCACTC
TCTTACGTTTAGCTGGTGACACCTTGGATCTTGAACTCGAGAATCTACAA
TGAGAACTTGGAAACGACCGATCTTGCAACCTAGACATGTCCGTGCAAGT
CACTTCAGCTTCCGATACATCGTCGGAAGTTGGTGTTGGCGATCCGCCGC
AGCTGTTGAGAAGCTCCGGCACCGGACGCAACGTGCCGCCTCGGAGGACA
GTTTCCACGGCAGCCTGGCAAACATGCCAGTTCCCCGTCCACAAAAGACC
T
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