CF833918

Overview
NameCF833918
Unique NameCF833918
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length676
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2871 contig Csv1_Contig2871:458..1133. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF833918 vs. ExPASy Swiss-Prot
Match: PALY_VITVI (Phenylalanine ammonia-lyase (Fragment) OS=Vitis vinifera GN=PAL PE=2 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 5.004e-82
Identity = 146/184 (79.35%), Postives = 162/184 (88.04%), Query Frame = 2
Query:    2 LEEPFKHTVKNTVSQVATIVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRFVREGLGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 553
            LEE  K TVK TVS VA   LT+GA+GELHPSRFCEKDLLK  DREHVFAYIDDPCSATYPLMQK+RQVLVEHALNNGE+EK  ++SIFQKI AFEEELK VLPKEVE+AR  VE+G+P+IPNRIKECRSYPLY+FVRE LG+  LTGEKV SPGE+FDKVFTAMC+GKIIDP+L+CL  WNGA
Sbjct:  228 LEENLKSTVKKTVSHVAKKTLTIGANGELHPSRFCEKDLLKVVDREHVFAYIDDPCSATYPLMQKVRQVLVEHALNNGESEKNGSTSIFQKIGAFEEELKAVLPKEVESARDGVESGNPSIPNRIKECRSYPLYKFVREELGTGLLTGEKVRSPGEDFDKVFTAMCEGKIIDPLLDCLSAWNGA 411          
BLAST of CF833918 vs. ExPASy Swiss-Prot
Match: PAL1_POPKI (Phenylalanine ammonia-lyase G1 OS=Populus kitakamiensis GN=PALG1 PE=3 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 2.746e-80
Identity = 142/184 (77.17%), Postives = 163/184 (88.59%), Query Frame = 2
Query:    2 LEEPFKHTVKNTVSQVATIVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRFVREGLGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 553
            +EE  K+TVKNTVSQVA  VLT+G +GELHPSR CEKDLLK  D+EHVFAYIDDPCSATYPLMQKLRQVLVEHAL NGE E  + +SIFQKI +FEEELKT+LPKEVE+AR  VENG+P +PNRIKECRSYPLY+FVRE LG++ LTGEKV SPGE+FDKVFTA+C GK++DP+LECL+EWNGA
Sbjct:  494 IEENLKNTVKNTVSQVAKRVLTMGFNGELHPSRLCEKDLLKLVDKEHVFAYIDDPCSATYPLMQKLRQVLVEHALVNGERETNSTTSIFQKIRSFEEELKTLLPKEVESARLEVENGNPVVPNRIKECRSYPLYKFVREELGTSLLTGEKVKSPGEDFDKVFTAICAGKLMDPLLECLKEWNGA 677          
BLAST of CF833918 vs. ExPASy Swiss-Prot
Match: PALY_STYHU (Phenylalanine ammonia-lyase OS=Stylosanthes humilis GN=PAL17.1 PE=2 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 2.325e-79
Identity = 144/184 (78.26%), Postives = 155/184 (84.24%), Query Frame = 2
Query:    2 LEEPFKHTVKNTVSQVATIVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRFVREGLGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 553
            LEE  K+TVKNTVSQVA   LT G +GELHPSRFCEKDLLK  DRE+ FAYIDDPCSATYPLMQKLRQVLVEHAL N ENEK  N+SIFQKI  FEEELKT+LPKEVE AR   ENG   IPN+IKECRSYPLY+FVRE LG+  LTGEKV SPGEE DK+FTAMCQGKIIDP+LEC+ EWNGA
Sbjct:  527 LEENLKNTVKNTVSQVAKRTLTTGVNGELHPSRFCEKDLLKIVDREYCFAYIDDPCSATYPLMQKLRQVLVEHALANAENEKNVNTSIFQKITTFEEELKTLLPKEVEGARIAYENGQSAIPNKIKECRSYPLYKFVREELGTEMLTGEKVRSPGEECDKLFTAMCQGKIIDPLLECIGEWNGA 710          
BLAST of CF833918 vs. ExPASy Swiss-Prot
Match: PAL1_DAUCA (Phenylalanine ammonia-lyase 1 OS=Daucus carota GN=PAL1 PE=3 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 2.325e-79
Identity = 142/184 (77.17%), Postives = 161/184 (87.50%), Query Frame = 2
Query:    2 LEEPFKHTVKNTVSQVATIVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRFVREGLGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 553
            LEE  K TVKNTVSQVA  VLT+G +GELHPSRFCE DLL+  DRE++FAYIDDPCSATYPLMQKLRQVLVEHAL NGE EK  ++SIFQKIAAFE+ELK +LPKEVE+AR  VE+G+P IPNRIKECRSYPLY+F+RE LG+ +LTGEKVTSPGEEFDKVFTAM +G+IIDP+L CL  WNGA
Sbjct:  520 LEENLKSTVKNTVSQVAKKVLTMGVNGELHPSRFCELDLLRVVDREYIFAYIDDPCSATYPLMQKLRQVLVEHALKNGETEKNLSTSIFQKIAAFEDELKALLPKEVESARAVVESGNPAIPNRIKECRSYPLYKFIREELGTVYLTGEKVTSPGEEFDKVFTAMSKGEIIDPLLACLESWNGA 703          
BLAST of CF833918 vs. ExPASy Swiss-Prot
Match: PALY_PERAE (Phenylalanine ammonia-lyase OS=Persea americana GN=PAL PE=2 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 3.036e-79
Identity = 143/184 (77.72%), Postives = 160/184 (86.96%), Query Frame = 2
Query:    2 LEEPFKHTVKNTVSQVATIVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRFVREGLGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 553
            LEE  K TVKNTVSQVA  VLT+G +GELHPSRFCEKDL+K  D EH+FAYIDDPCS TYPLMQKLRQVLVEHAL NGE EK +++SIFQKI AFEEELKT LPKEVE+AR  +E G+  IPNRIKECRSYPLY+FVRE L ++ LTGEKV SPGEEFDKVF+A+CQGK+IDP+LECLREWNGA
Sbjct:  432 LEENLKSTVKNTVSQVAKRVLTIGVNGELHPSRFCEKDLIKVVDGEHLFAYIDDPCSCTYPLMQKLRQVLVEHALINGEKEKDSSTSIFQKIGAFEEELKTHLPKEVESARIELERGNSAIPNRIKECRSYPLYKFVREELKTSLLTGEKVRSPGEEFDKVFSAICQGKVIDPLLECLREWNGA 615          
BLAST of CF833918 vs. ExPASy Swiss-Prot
Match: PALY_CAMSI (Phenylalanine ammonia-lyase OS=Camellia sinensis GN=PAL PE=2 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 3.965e-79
Identity = 137/183 (74.86%), Postives = 163/183 (89.07%), Query Frame = 2
Query:    5 EEPFKHTVKNTVSQVATIVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRFVREGLGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 553
            EE  ++TVK+TVSQVA  VLT+G +GELHPSRFCEKDLL+  DRE++FAYIDDPCSATYPLMQKLRQVLVEHAL NGE+EK  ++SIFQKI AFEEE+KT+LPKEVE+ R  +ENG+  IPNRIKECRSYPLY+FVRE LG+  LTGEKV SPGEEFDKVFTA+C+G++IDP+++CL+EWNGA
Sbjct:  527 EENLRNTVKSTVSQVAKRVLTMGVNGELHPSRFCEKDLLRVVDREYIFAYIDDPCSATYPLMQKLRQVLVEHALKNGESEKNLSTSIFQKIRAFEEEIKTLLPKEVESTRAAIENGNSAIPNRIKECRSYPLYKFVREELGTELLTGEKVRSPGEEFDKVFTALCKGEMIDPLMDCLKEWNGA 709          
BLAST of CF833918 vs. ExPASy Swiss-Prot
Match: PALY_CITLI (Phenylalanine ammonia-lyase OS=Citrus limon GN=PAL6 PE=2 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 5.179e-79
Identity = 140/184 (76.09%), Postives = 163/184 (88.59%), Query Frame = 2
Query:    2 LEEPFKHTVKNTVSQVATIVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRFVREGLGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 553
            LEE  K+TVKNTVSQVA  VLT+G +GELHPSRFCEKDL+K  DRE+VFAYIDDPCSA+ PLMQKLRQVLV+HAL+NG+ EK + +SIFQKI AFE+ELKT+LPKEVE AR  +E+G+  IPNRIKECRSYPLY+ VRE +G++ LTGEKV SPGEEFDKVFTAMC+GK+IDPMLECL+EWNGA
Sbjct:  532 LEENLKNTVKNTVSQVAKRVLTMGVNGELHPSRFCEKDLIKVVDREYVFAYIDDPCSASSPLMQKLRQVLVDHALDNGDREKNSTTSIFQKIGAFEDELKTLLPKEVEIARTELESGNAAIPNRIKECRSYPLYKIVREDIGTSLLTGEKVRSPGEEFDKVFTAMCEGKLIDPMLECLKEWNGA 715          
BLAST of CF833918 vs. ExPASy Swiss-Prot
Match: PAL2_ARATH (Phenylalanine ammonia-lyase 2 OS=Arabidopsis thaliana GN=PAL2 PE=1 SV=2)

HSP 1 Score: 293.893 bits (751), Expect = 5.179e-79
Identity = 141/184 (76.63%), Postives = 157/184 (85.33%), Query Frame = 2
Query:    2 LEEPFKHTVKNTVSQVATIVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRFVREGLGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 553
            LEE  + TVKNTVSQVA  VLT G +GELHPSRFCEKDLLK  DRE VF Y+DDPCSATYPLMQ+LRQV+V+HAL+NGE EK A +SIFQKI AFEEELK VLPKEVE AR    NG+  IPNRIKECRSYPLYRFVRE LG+  LTGEKV SPGEEFDKVFTAMC+GK+IDP+++CL+EWNGA
Sbjct:  529 LEENLRQTVKNTVSQVAKKVLTTGINGELHPSRFCEKDLLKVVDREQVFTYVDDPCSATYPLMQRLRQVIVDHALSNGETEKNAVTSIFQKIGAFEEELKAVLPKEVEAARAAYGNGTAPIPNRIKECRSYPLYRFVREELGTKLLTGEKVVSPGEEFDKVFTAMCEGKLIDPLMDCLKEWNGA 712          
BLAST of CF833918 vs. ExPASy Swiss-Prot
Match: PAL3_PETCR (Phenylalanine ammonia-lyase 3 OS=Petroselinum crispum GN=PAL3 PE=2 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 6.763e-79
Identity = 139/184 (75.54%), Postives = 161/184 (87.50%), Query Frame = 2
Query:    2 LEEPFKHTVKNTVSQVATIVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRFVREGLGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 553
            LEE  K TVKNTVSQVA  VLT+G +GELHPSRFCEKDLL+  DRE++FAYIDDPCSATYPLMQKLR+ LVEHALNNG+ E+  ++SIFQKIAAFE+ELK +LPKEVE AR  +E+G+P IPNRIKECRSYPLY+FVRE LG+ +LTGEKV SPGEEF+KVFTAM +G+IIDP+LECL  WNGA
Sbjct:  530 LEENLKSTVKNTVSQVAKRVLTMGVNGELHPSRFCEKDLLRVVDREYIFAYIDDPCSATYPLMQKLRETLVEHALNNGDKERNLSTSIFQKIAAFEDELKALLPKEVETARAALESGNPAIPNRIKECRSYPLYKFVREELGTEYLTGEKVRSPGEEFEKVFTAMSKGEIIDPLLECLESWNGA 713          
BLAST of CF833918 vs. ExPASy Swiss-Prot
Match: PALY_MEDSA (Phenylalanine ammonia-lyase OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 8.833e-79
Identity = 142/184 (77.17%), Postives = 159/184 (86.41%), Query Frame = 2
Query:    2 LEEPFKHTVKNTVSQVATIVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRFVREGLGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 553
            LEE  K++VKNTVSQVA   LT+G +GELHPSRFCEKDLLK  DREHVFAYIDDPCSATYPL QKLRQVLV+HAL NGE+EK  N+SIFQKIA FEEELKT+LPKEVE+AR   E+G+PTIPN+I  CRSYPLY+FVRE LG+  LTGE V SPGEE DK+F+AMCQGKIIDP+LECL EWNGA
Sbjct:  537 LEENLKNSVKNTVSQVAKKTLTMGVNGELHPSRFCEKDLLKVVDREHVFAYIDDPCSATYPLSQKLRQVLVDHALVNGESEKNFNTSIFQKIATFEEELKTLLPKEVESARTAYESGNPTIPNKINGCRSYPLYKFVREELGTGLLTGENVISPGEECDKLFSAMCQGKIIDPLLECLGEWNGA 720          
The following BLAST results are available for this feature:
BLAST of CF833918 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
PALY_VITVI5.004e-8279.35Phenylalanine ammonia-lyase (Fragment) OS=Vitis vi... [more]
PAL1_POPKI2.746e-8077.17Phenylalanine ammonia-lyase G1 OS=Populus kitakami... [more]
PALY_STYHU2.325e-7978.26Phenylalanine ammonia-lyase OS=Stylosanthes humili... [more]
PAL1_DAUCA2.325e-7977.17Phenylalanine ammonia-lyase 1 OS=Daucus carota GN=... [more]
PALY_PERAE3.036e-7977.72Phenylalanine ammonia-lyase OS=Persea americana GN... [more]
PALY_CAMSI3.965e-7974.86Phenylalanine ammonia-lyase OS=Camellia sinensis G... [more]
PALY_CITLI5.179e-7976.09Phenylalanine ammonia-lyase OS=Citrus limon GN=PAL... [more]
PAL2_ARATH5.179e-7976.63Phenylalanine ammonia-lyase 2 OS=Arabidopsis thali... [more]
PAL3_PETCR6.763e-7975.54Phenylalanine ammonia-lyase 3 OS=Petroselinum cris... [more]
PALY_MEDSA8.833e-7977.17Phenylalanine ammonia-lyase OS=Medicago sativa PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04I10_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04I10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833918 ID=CF833918; Name=CF833918; organism=Citrus sinensis; type=EST; length=676bp
TTTGGAGGAACCCTTTAAGCATACAGTCAAGAATACTGTCAGCCAAGTAG
CTACCATAGTCTTAACCGTCGGTGCTAGTGGAGAGCTTCATCCATCAAGA
TTCTGTGAGAAGGATCTGCTCAAAGCGGCTGATCGCGAACACGTCTTTGC
ATACATTGATGACCCCTGCAGTGCTACCTATCCATTGATGCAAAAGCTAA
GGCAAGTACTTGTTGAGCACGCACTGAACAATGGAGAGAACGAGAAGACT
GCCAACTCTTCAATCTTCCAGAAGATTGCAGCCTTTGAGGAGGAATTGAA
AACCGTTTTGCCGAAAGAAGTTGAGAATGCCAGGCAGACTGTTGAGAATG
GAAGTCCAACAATTCCCAACAGGATCAAAGAATGCAGGTCTTACCCGTTG
TACAGGTTCGTGAGGGAGGGGCTCGGGTCTAATTTTCTAACAGGGGAAAA
AGTTACATCGCCCGGCGAGGAATTTGACAAAGTTTTTACAGCAATGTGCC
AGGGCAAGATCATTGATCCAATGCTGGAATGTCTCAGGGAATGGAATGGC
GCCCCTCTTCCAATTTGTTAGTTGTTTTTATTTTGTTTAATAACATGGTC
TTCAATCCCTTGTGTTCTTGTGTTCATAGAATTTGCCCATGCGAGTCAGG
GGTACAAATCCATCTGTAATATTTCA
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