CF833920
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF833920 vs. ExPASy Swiss-Prot
Match: SPDE_COFAR (Spermidine synthase OS=Coffea arabica PE=2 SV=1) HSP 1 Score: 360.533 bits (924), Expect = 6.673e-99 Identity = 174/189 (92.06%), Postives = 181/189 (95.77%), Query Frame = -3 Query: 287 IDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPPVDFKHPVNPIDADDSHCNSSKGPLKFYNSEIHTAAFCLPTFAKKVIESK 853 IDICEIDKMVVDVSKQFFPDVAVGFEDPRV LHIGDGVAFLKAVPEGTYDA+IVDSSDPIGPAQELFEKPFFESVAKALRPGGVV TQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPPVDFKHP+NPIDA+D + K PLKFYNSEIH+AAFCLP+FAKKVI+SK Sbjct: 127 IDICEIDKMVVDVSKQFFPDVAVGFEDPRVVLHIGDGVAFLKAVPEGTYDAIIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVCTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPPVDFKHPINPIDANDGRSKTMK-PLKFYNSEIHSAAFCLPSFAKKVIDSK 314
BLAST of CF833920 vs. ExPASy Swiss-Prot
Match: SPD1_DATST (Spermidine synthase 1 OS=Datura stramonium PE=2 SV=1) HSP 1 Score: 351.288 bits (900), Expect = 4.048e-96 Identity = 166/191 (86.91%), Postives = 182/191 (95.29%), Query Frame = -3 Query: 281 IDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPPVDFKHPVNPIDADDSHCNSSKGPLKFYNSEIHTAAFCLPTFAKKVIESKNE 853 IDICEIDKMV+DVSKQFFP+VA+G+EDPRV LH+GDGVAFLK V EGTYDAVIVDSSDPIGPAQELFEKPFFESVA+ALRPGGVV TQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGP VDFK+P+NP+DADDSH ++GPLKFYNSEIH+A+FCLP+FAK+VIESK + Sbjct: 119 IDICEIDKMVIDVSKQFFPNVAIGYEDPRVKLHVGDGVAFLKFVAEGTYDAVIVDSSDPIGPAQELFEKPFFESVARALRPGGVVCTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPAVDFKNPINPVDADDSH-TKTRGPLKFYNSEIHSASFCLPSFAKRVIESKGK 308
BLAST of CF833920 vs. ExPASy Swiss-Prot
Match: SPD2_HYONI (Spermidine synthase 2 OS=Hyoscyamus niger PE=2 SV=1) HSP 1 Score: 348.206 bits (892), Expect = 3.427e-95 Identity = 165/188 (87.77%), Postives = 180/188 (95.74%), Query Frame = -3 Query: 290 IDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPPVDFKHPVNPIDADDSHCNSSKGPLKFYNSEIHTAAFCLPTFAKKVIES 853 IDICEIDKMV+DVSKQFFP+VA+G+EDPRV LH+GDGVAFLK VPEGTYDAVIVDSSDPIGPAQELFEKPFFESVA+AL PGGVV TQAESIWLHMHIIEDIV+NCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGP VDFK+P+NPIDADDSH ++GPLKFYNSEIH+A+FCLP+FAK+VIES Sbjct: 119 IDICEIDKMVIDVSKQFFPNVAIGYEDPRVKLHVGDGVAFLKNVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVARALCPGGVVCTQAESIWLHMHIIEDIVSNCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPAVDFKNPINPIDADDSH-TKTRGPLKFYNSEIHSASFCLPSFAKRVIES 305
BLAST of CF833920 vs. ExPASy Swiss-Prot
Match: SPDE_NICSY (Spermidine synthase OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 343.199 bits (879), Expect = 1.102e-93 Identity = 164/191 (85.86%), Postives = 179/191 (93.72%), Query Frame = -3 Query: 281 IDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPPVDFKHPVNPIDADDSHCNSSKGPLKFYNSEIHTAAFCLPTFAKKVIESKNE 853 IDICEIDKMVV+VSKQFFPDVAVG+EDPRV LHIGDGVAFLK V GTYDAVIVDSSDPIGPAQELFEKPFFES+A+ALRPGGVVSTQAESIWLHMHIIE+IVANCRQIFKGSVNYAWTTVPTYPSG+IGFMLCSTEGP VDFK+P+NPID D SH N + GP+KFYNSE+H A+FCLP+FAK+VIESK + Sbjct: 125 IDICEIDKMVVEVSKQFFPDVAVGYEDPRVNLHIGDGVAFLKNVAAGTYDAVIVDSSDPIGPAQELFEKPFFESIARALRPGGVVSTQAESIWLHMHIIEEIVANCRQIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPAVDFKNPINPIDDDASH-NKTLGPMKFYNSELHKASFCLPSFAKRVIESKGK 314
BLAST of CF833920 vs. ExPASy Swiss-Prot
Match: SPD2_DATST (Spermidine synthase 2 OS=Datura stramonium PE=2 SV=1) HSP 1 Score: 338.191 bits (866), Expect = 3.547e-92 Identity = 162/191 (84.82%), Postives = 180/191 (94.24%), Query Frame = -3 Query: 281 IDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPPVDFKHPVNPIDADDSHCNSSKGPLKFYNSEIHTAAFCLPTFAKKVIESKNE 853 IDICEIDKMVV+V+KQFFPDVAVG+EDPRV LHIGDGVAFLK VP GTYDAVIVDSSDPIGPAQELFEKPFFE++A+ALRPGGVVSTQAESIWLHMHIIE+IVANCR+IFKGSVNYAWTTVPTYPSG+IGFMLCSTEGP VDFK+P+NPID D+SH + GPLKFYNSEIH A+FCLP+FAK+VIE+K + Sbjct: 129 IDICEIDKMVVEVAKQFFPDVAVGYEDPRVNLHIGDGVAFLKNVPAGTYDAVIVDSSDPIGPAQELFEKPFFETIARALRPGGVVSTQAESIWLHMHIIEEIVANCREIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPAVDFKNPINPID-DESH-GQTIGPLKFYNSEIHQASFCLPSFAKRVIETKGK 317
BLAST of CF833920 vs. ExPASy Swiss-Prot
Match: SPD1_PEA (Spermidine synthase 1 OS=Pisum sativum GN=SPDSYN1 PE=2 SV=1) HSP 1 Score: 337.806 bits (865), Expect = 4.632e-92 Identity = 162/189 (85.71%), Postives = 174/189 (92.06%), Query Frame = -3 Query: 287 IDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPPVDFKHPVNPIDADDSHCNSSKGPLKFYNSEIHTAAFCLPTFAKKVIESK 853 IDICEIDKMVVDVSK++FPD+AVGF DPRVTL+IGDGVAFLKA PEGTYDAVIVDSSDPIGPAQELFEKPFFESVA+ALRPGGVV TQAESIWLHMHIIEDIV NCRQ+FKGSVNYAWTTVPTYPSG+IGFMLCSTEGP VDFKHPVNPID +DS + PLKFYN EIH+AAFCLP+FAK+ I SK Sbjct: 146 IDICEIDKMVVDVSKEYFPDIAVGFADPRVTLNIGDGVAFLKAAPEGTYDAVIVDSSDPIGPAQELFEKPFFESVARALRPGGVVCTQAESIWLHMHIIEDIVVNCRQVFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPSVDFKHPVNPIDENDS--QQAARPLKFYNREIHSAAFCLPSFAKRAIASK 332
BLAST of CF833920 vs. ExPASy Swiss-Prot
Match: SPDE_SOLLC (Spermidine synthase OS=Solanum lycopersicum GN=SPDSYN PE=2 SV=1) HSP 1 Score: 337.421 bits (864), Expect = 6.049e-92 Identity = 164/191 (85.86%), Postives = 179/191 (93.72%), Query Frame = -3 Query: 281 IDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPPVDFKHPVNPIDADDSHCNSSKGPLKFYNSEIHTAAFCLPTFAKKVIESKNE 853 IDICEIDKMVV+V+KQFFPDVAVG+EDPRV LHIGDGVAFLK VP GTYDAVIVDSSDPIGPAQELFEKPFFES+AKALRPGGVVSTQAESIWLHMHIIE+IVANCRQIFKGSVNYAWTTVPTYPSG+IGFMLCSTEGP VDFK+P+NPID D+S S + PLKFYNSEIH A+FCLP+FAK+VIE+K + Sbjct: 154 IDICEIDKMVVEVAKQFFPDVAVGYEDPRVNLHIGDGVAFLKNVPAGTYDAVIVDSSDPIGPAQELFEKPFFESIAKALRPGGVVSTQAESIWLHMHIIEEIVANCRQIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPAVDFKNPINPID-DESPAKSIE-PLKFYNSEIHQASFCLPSFAKRVIETKGK 342
BLAST of CF833920 vs. ExPASy Swiss-Prot
Match: SPD1_ORYSJ (Spermidine synthase 1 OS=Oryza sativa subsp. japonica GN=SPDSYN1 PE=2 SV=1) HSP 1 Score: 335.88 bits (860), Expect = 1.760e-91 Identity = 162/189 (85.71%), Postives = 175/189 (92.59%), Query Frame = -3 Query: 287 IDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPPVDFKHPVNPIDADDSHCNSSKGPLKFYNSEIHTAAFCLPTFAKKVIESK 853 IDICEIDKMVVDVSKQFFP +AVGFEDPRV+LHIGDGVAFLK PEGTYDAVIVDSSDPIGPAQELFEKPFF+SVA+ALRPGGVV TQAESIWLHMHIIEDIVANCRQ+FKGSVNYAWTTVPTYPSGVIGFMLCSTEGP VDF+HP+ I+ D+ SKGPLKFYNSEIH+A+FCLP+FAK+VI SK Sbjct: 134 IDICEIDKMVVDVSKQFFPHLAVGFEDPRVSLHIGDGVAFLKNAPEGTYDAVIVDSSDPIGPAQELFEKPFFQSVARALRPGGVVCTQAESIWLHMHIIEDIVANCRQVFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPTVDFQHPIFNIE-DNEFSTKSKGPLKFYNSEIHSASFCLPSFAKRVIGSK 321
BLAST of CF833920 vs. ExPASy Swiss-Prot
Match: SPD1_HYONI (Spermidine synthase 1 OS=Hyoscyamus niger PE=2 SV=1) HSP 1 Score: 334.724 bits (857), Expect = 3.921e-91 Identity = 161/191 (84.29%), Postives = 176/191 (92.15%), Query Frame = -3 Query: 281 IDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPPVDFKHPVNPIDADDSHCNSSKGPLKFYNSEIHTAAFCLPTFAKKVIESKNE 853 IDICEIDKMVV+V+K+FFPDVAVG+EDPRV LHIGDGVAFLK VP GTYDAVIVDSSDPIGPAQELFEKPFFES+A+ALRPGGVVSTQAESIWLHMHIIE+IVANCRQIFKGSVNYAWTTVPTYPSG+IGFMLCSTEGP VDFK+P+NPI DD + PLKFYNSEIH A+FCLP+FAK+VIESK + Sbjct: 127 IDICEIDKMVVEVAKEFFPDVAVGYEDPRVNLHIGDGVAFLKNVPAGTYDAVIVDSSDPIGPAQELFEKPFFESIARALRPGGVVSTQAESIWLHMHIIEEIVANCRQIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPAVDFKNPINPI--DDESGPKTIAPLKFYNSEIHQASFCLPSFAKRVIESKGK 315
BLAST of CF833920 vs. ExPASy Swiss-Prot
Match: SPD2_PEA (Spermidine synthase 2 OS=Pisum sativum GN=SPDSYN2 PE=2 SV=1) HSP 1 Score: 332.028 bits (850), Expect = 2.542e-90 Identity = 162/189 (85.71%), Postives = 171/189 (90.48%), Query Frame = -3 Query: 287 IDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPPVDFKHPVNPIDADDSHCNSSKGPLKFYNSEIHTAAFCLPTFAKKVIESK 853 IDICEID MVV+VSKQFFP+VAVGF DPRVTL IGDGVAFLKA PEGTYDAVIVDSSDPIGPAQELFEKPFF+SVA+ALRPGGV+ TQAESIWLHM IIEDIV+NCR IFKGSVNYAWTTVPTYPSG+IGFMLCSTEGP VDFKHPVNPID D C S PLKFYNSEIHTAAFCLP+FAK+ I SK Sbjct: 154 IDICEIDNMVVEVSKQFFPEVAVGFNDPRVTLRIGDGVAFLKAAPEGTYDAVIVDSSDPIGPAQELFEKPFFQSVARALRPGGVMCTQAESIWLHMDIIEDIVSNCRHIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPLVDFKHPVNPIDQKD--CQKSVRPLKFYNSEIHTAAFCLPSFAKRKIGSK 340 The following BLAST results are available for this feature:
BLAST of CF833920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 193
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Sequences
The
following sequences are available for this feature:
EST sequence >CF833920 ID=CF833920; Name=CF833920; organism=Citrus sinensis; type=EST; length=855bpback to top |