CF833920

Overview
NameCF833920
Unique NameCF833920
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833920 vs. ExPASy Swiss-Prot
Match: SPDE_COFAR (Spermidine synthase OS=Coffea arabica PE=2 SV=1)

HSP 1 Score: 360.533 bits (924), Expect = 6.673e-99
Identity = 174/189 (92.06%), Postives = 181/189 (95.77%), Query Frame = -3
Query:  287 IDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPPVDFKHPVNPIDADDSHCNSSKGPLKFYNSEIHTAAFCLPTFAKKVIESK 853
            IDICEIDKMVVDVSKQFFPDVAVGFEDPRV LHIGDGVAFLKAVPEGTYDA+IVDSSDPIGPAQELFEKPFFESVAKALRPGGVV TQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPPVDFKHP+NPIDA+D    + K PLKFYNSEIH+AAFCLP+FAKKVI+SK
Sbjct:  127 IDICEIDKMVVDVSKQFFPDVAVGFEDPRVVLHIGDGVAFLKAVPEGTYDAIIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVCTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPPVDFKHPINPIDANDGRSKTMK-PLKFYNSEIHSAAFCLPSFAKKVIDSK 314          
BLAST of CF833920 vs. ExPASy Swiss-Prot
Match: SPD1_DATST (Spermidine synthase 1 OS=Datura stramonium PE=2 SV=1)

HSP 1 Score: 351.288 bits (900), Expect = 4.048e-96
Identity = 166/191 (86.91%), Postives = 182/191 (95.29%), Query Frame = -3
Query:  281 IDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPPVDFKHPVNPIDADDSHCNSSKGPLKFYNSEIHTAAFCLPTFAKKVIESKNE 853
            IDICEIDKMV+DVSKQFFP+VA+G+EDPRV LH+GDGVAFLK V EGTYDAVIVDSSDPIGPAQELFEKPFFESVA+ALRPGGVV TQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGP VDFK+P+NP+DADDSH   ++GPLKFYNSEIH+A+FCLP+FAK+VIESK +
Sbjct:  119 IDICEIDKMVIDVSKQFFPNVAIGYEDPRVKLHVGDGVAFLKFVAEGTYDAVIVDSSDPIGPAQELFEKPFFESVARALRPGGVVCTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPAVDFKNPINPVDADDSH-TKTRGPLKFYNSEIHSASFCLPSFAKRVIESKGK 308          
BLAST of CF833920 vs. ExPASy Swiss-Prot
Match: SPD2_HYONI (Spermidine synthase 2 OS=Hyoscyamus niger PE=2 SV=1)

HSP 1 Score: 348.206 bits (892), Expect = 3.427e-95
Identity = 165/188 (87.77%), Postives = 180/188 (95.74%), Query Frame = -3
Query:  290 IDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPPVDFKHPVNPIDADDSHCNSSKGPLKFYNSEIHTAAFCLPTFAKKVIES 853
            IDICEIDKMV+DVSKQFFP+VA+G+EDPRV LH+GDGVAFLK VPEGTYDAVIVDSSDPIGPAQELFEKPFFESVA+AL PGGVV TQAESIWLHMHIIEDIV+NCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGP VDFK+P+NPIDADDSH   ++GPLKFYNSEIH+A+FCLP+FAK+VIES
Sbjct:  119 IDICEIDKMVIDVSKQFFPNVAIGYEDPRVKLHVGDGVAFLKNVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVARALCPGGVVCTQAESIWLHMHIIEDIVSNCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPAVDFKNPINPIDADDSH-TKTRGPLKFYNSEIHSASFCLPSFAKRVIES 305          
BLAST of CF833920 vs. ExPASy Swiss-Prot
Match: SPDE_NICSY (Spermidine synthase OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 343.199 bits (879), Expect = 1.102e-93
Identity = 164/191 (85.86%), Postives = 179/191 (93.72%), Query Frame = -3
Query:  281 IDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPPVDFKHPVNPIDADDSHCNSSKGPLKFYNSEIHTAAFCLPTFAKKVIESKNE 853
            IDICEIDKMVV+VSKQFFPDVAVG+EDPRV LHIGDGVAFLK V  GTYDAVIVDSSDPIGPAQELFEKPFFES+A+ALRPGGVVSTQAESIWLHMHIIE+IVANCRQIFKGSVNYAWTTVPTYPSG+IGFMLCSTEGP VDFK+P+NPID D SH N + GP+KFYNSE+H A+FCLP+FAK+VIESK +
Sbjct:  125 IDICEIDKMVVEVSKQFFPDVAVGYEDPRVNLHIGDGVAFLKNVAAGTYDAVIVDSSDPIGPAQELFEKPFFESIARALRPGGVVSTQAESIWLHMHIIEEIVANCRQIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPAVDFKNPINPIDDDASH-NKTLGPMKFYNSELHKASFCLPSFAKRVIESKGK 314          
BLAST of CF833920 vs. ExPASy Swiss-Prot
Match: SPD2_DATST (Spermidine synthase 2 OS=Datura stramonium PE=2 SV=1)

HSP 1 Score: 338.191 bits (866), Expect = 3.547e-92
Identity = 162/191 (84.82%), Postives = 180/191 (94.24%), Query Frame = -3
Query:  281 IDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPPVDFKHPVNPIDADDSHCNSSKGPLKFYNSEIHTAAFCLPTFAKKVIESKNE 853
            IDICEIDKMVV+V+KQFFPDVAVG+EDPRV LHIGDGVAFLK VP GTYDAVIVDSSDPIGPAQELFEKPFFE++A+ALRPGGVVSTQAESIWLHMHIIE+IVANCR+IFKGSVNYAWTTVPTYPSG+IGFMLCSTEGP VDFK+P+NPID D+SH   + GPLKFYNSEIH A+FCLP+FAK+VIE+K +
Sbjct:  129 IDICEIDKMVVEVAKQFFPDVAVGYEDPRVNLHIGDGVAFLKNVPAGTYDAVIVDSSDPIGPAQELFEKPFFETIARALRPGGVVSTQAESIWLHMHIIEEIVANCREIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPAVDFKNPINPID-DESH-GQTIGPLKFYNSEIHQASFCLPSFAKRVIETKGK 317          
BLAST of CF833920 vs. ExPASy Swiss-Prot
Match: SPD1_PEA (Spermidine synthase 1 OS=Pisum sativum GN=SPDSYN1 PE=2 SV=1)

HSP 1 Score: 337.806 bits (865), Expect = 4.632e-92
Identity = 162/189 (85.71%), Postives = 174/189 (92.06%), Query Frame = -3
Query:  287 IDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPPVDFKHPVNPIDADDSHCNSSKGPLKFYNSEIHTAAFCLPTFAKKVIESK 853
            IDICEIDKMVVDVSK++FPD+AVGF DPRVTL+IGDGVAFLKA PEGTYDAVIVDSSDPIGPAQELFEKPFFESVA+ALRPGGVV TQAESIWLHMHIIEDIV NCRQ+FKGSVNYAWTTVPTYPSG+IGFMLCSTEGP VDFKHPVNPID +DS    +  PLKFYN EIH+AAFCLP+FAK+ I SK
Sbjct:  146 IDICEIDKMVVDVSKEYFPDIAVGFADPRVTLNIGDGVAFLKAAPEGTYDAVIVDSSDPIGPAQELFEKPFFESVARALRPGGVVCTQAESIWLHMHIIEDIVVNCRQVFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPSVDFKHPVNPIDENDS--QQAARPLKFYNREIHSAAFCLPSFAKRAIASK 332          
BLAST of CF833920 vs. ExPASy Swiss-Prot
Match: SPDE_SOLLC (Spermidine synthase OS=Solanum lycopersicum GN=SPDSYN PE=2 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 6.049e-92
Identity = 164/191 (85.86%), Postives = 179/191 (93.72%), Query Frame = -3
Query:  281 IDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPPVDFKHPVNPIDADDSHCNSSKGPLKFYNSEIHTAAFCLPTFAKKVIESKNE 853
            IDICEIDKMVV+V+KQFFPDVAVG+EDPRV LHIGDGVAFLK VP GTYDAVIVDSSDPIGPAQELFEKPFFES+AKALRPGGVVSTQAESIWLHMHIIE+IVANCRQIFKGSVNYAWTTVPTYPSG+IGFMLCSTEGP VDFK+P+NPID D+S   S + PLKFYNSEIH A+FCLP+FAK+VIE+K +
Sbjct:  154 IDICEIDKMVVEVAKQFFPDVAVGYEDPRVNLHIGDGVAFLKNVPAGTYDAVIVDSSDPIGPAQELFEKPFFESIAKALRPGGVVSTQAESIWLHMHIIEEIVANCRQIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPAVDFKNPINPID-DESPAKSIE-PLKFYNSEIHQASFCLPSFAKRVIETKGK 342          
BLAST of CF833920 vs. ExPASy Swiss-Prot
Match: SPD1_ORYSJ (Spermidine synthase 1 OS=Oryza sativa subsp. japonica GN=SPDSYN1 PE=2 SV=1)

HSP 1 Score: 335.88 bits (860), Expect = 1.760e-91
Identity = 162/189 (85.71%), Postives = 175/189 (92.59%), Query Frame = -3
Query:  287 IDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPPVDFKHPVNPIDADDSHCNSSKGPLKFYNSEIHTAAFCLPTFAKKVIESK 853
            IDICEIDKMVVDVSKQFFP +AVGFEDPRV+LHIGDGVAFLK  PEGTYDAVIVDSSDPIGPAQELFEKPFF+SVA+ALRPGGVV TQAESIWLHMHIIEDIVANCRQ+FKGSVNYAWTTVPTYPSGVIGFMLCSTEGP VDF+HP+  I+ D+     SKGPLKFYNSEIH+A+FCLP+FAK+VI SK
Sbjct:  134 IDICEIDKMVVDVSKQFFPHLAVGFEDPRVSLHIGDGVAFLKNAPEGTYDAVIVDSSDPIGPAQELFEKPFFQSVARALRPGGVVCTQAESIWLHMHIIEDIVANCRQVFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPTVDFQHPIFNIE-DNEFSTKSKGPLKFYNSEIHSASFCLPSFAKRVIGSK 321          
BLAST of CF833920 vs. ExPASy Swiss-Prot
Match: SPD1_HYONI (Spermidine synthase 1 OS=Hyoscyamus niger PE=2 SV=1)

HSP 1 Score: 334.724 bits (857), Expect = 3.921e-91
Identity = 161/191 (84.29%), Postives = 176/191 (92.15%), Query Frame = -3
Query:  281 IDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPPVDFKHPVNPIDADDSHCNSSKGPLKFYNSEIHTAAFCLPTFAKKVIESKNE 853
            IDICEIDKMVV+V+K+FFPDVAVG+EDPRV LHIGDGVAFLK VP GTYDAVIVDSSDPIGPAQELFEKPFFES+A+ALRPGGVVSTQAESIWLHMHIIE+IVANCRQIFKGSVNYAWTTVPTYPSG+IGFMLCSTEGP VDFK+P+NPI  DD     +  PLKFYNSEIH A+FCLP+FAK+VIESK +
Sbjct:  127 IDICEIDKMVVEVAKEFFPDVAVGYEDPRVNLHIGDGVAFLKNVPAGTYDAVIVDSSDPIGPAQELFEKPFFESIARALRPGGVVSTQAESIWLHMHIIEEIVANCRQIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPAVDFKNPINPI--DDESGPKTIAPLKFYNSEIHQASFCLPSFAKRVIESKGK 315          
BLAST of CF833920 vs. ExPASy Swiss-Prot
Match: SPD2_PEA (Spermidine synthase 2 OS=Pisum sativum GN=SPDSYN2 PE=2 SV=1)

HSP 1 Score: 332.028 bits (850), Expect = 2.542e-90
Identity = 162/189 (85.71%), Postives = 171/189 (90.48%), Query Frame = -3
Query:  287 IDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPPVDFKHPVNPIDADDSHCNSSKGPLKFYNSEIHTAAFCLPTFAKKVIESK 853
            IDICEID MVV+VSKQFFP+VAVGF DPRVTL IGDGVAFLKA PEGTYDAVIVDSSDPIGPAQELFEKPFF+SVA+ALRPGGV+ TQAESIWLHM IIEDIV+NCR IFKGSVNYAWTTVPTYPSG+IGFMLCSTEGP VDFKHPVNPID  D  C  S  PLKFYNSEIHTAAFCLP+FAK+ I SK
Sbjct:  154 IDICEIDNMVVEVSKQFFPEVAVGFNDPRVTLRIGDGVAFLKAAPEGTYDAVIVDSSDPIGPAQELFEKPFFQSVARALRPGGVMCTQAESIWLHMDIIEDIVSNCRHIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPLVDFKHPVNPIDQKD--CQKSVRPLKFYNSEIHTAAFCLPSFAKRKIGSK 340          
The following BLAST results are available for this feature:
BLAST of CF833920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 193
Match NameE-valueIdentityDescription
SPDE_COFAR6.673e-9992.06Spermidine synthase OS=Coffea arabica PE=2 SV=1[more]
SPD1_DATST4.048e-9686.91Spermidine synthase 1 OS=Datura stramonium PE=2 SV... [more]
SPD2_HYONI3.427e-9587.77Spermidine synthase 2 OS=Hyoscyamus niger PE=2 SV=... [more]
SPDE_NICSY1.102e-9385.86Spermidine synthase OS=Nicotiana sylvestris PE=2 S... [more]
SPD2_DATST3.547e-9284.82Spermidine synthase 2 OS=Datura stramonium PE=2 SV... [more]
SPD1_PEA4.632e-9285.71Spermidine synthase 1 OS=Pisum sativum GN=SPDSYN1 ... [more]
SPDE_SOLLC6.049e-9285.86Spermidine synthase OS=Solanum lycopersicum GN=SPD... [more]
SPD1_ORYSJ1.760e-9185.71Spermidine synthase 1 OS=Oryza sativa subsp. japon... [more]
SPD1_HYONI3.921e-9184.29Spermidine synthase 1 OS=Hyoscyamus niger PE=2 SV=... [more]
SPD2_PEA2.542e-9085.71Spermidine synthase 2 OS=Pisum sativum GN=SPDSYN2 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04I12_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04I12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833920 ID=CF833920; Name=CF833920; organism=Citrus sinensis; type=EST; length=855bp
TTTTTTTTTTTTTTTTTCCATTGAAAGAAACANCTTTAATAAATGCACTA
TAAGAAACAATTTTCAGCNATATATGAAATTGAAAGGTCACTACTTCGCC
TAACATTTAATCATATAATCCATCAACANAGACAAACCTCTGCTTGACAA
AGATGTACCTCAGAACAGGGAACTAAAAATAATTTTATTCAATTTTTTAA
GTGGCTAAATGGGACCACTTTGTAAGAGGGACAAGAAGCTGCGTGGATGG
TCTACAACATCGGTGACTTTTTCAAATCTTCTCATTTTTTGATTCAATGA
CCTTCTTTGCAAACGTTGGCAAACAGAATGCTGCTGTGTGGATCTCTGAG
TTGTAAAATTTCAGGGGTCCTTTTGATGAATTACAGTGACTATCATCAGC
ATCTATAGGATTCACTGGATGCTTGAAATCAACAGGAGGCCCCTCAGTTG
AGCAAAGCATGAAACCAATCACCCCGCTTGGATATGTAGGGACTGTAGTC
CATGCATAATTGACAGAGCCTTTGAAGATCTGGCGGCAGTTTGCAACAAT
GTCCTCTATAATGTGCATGTGAAGCCAGATGCTTTCTGCCTGAGTACTCA
CTACACCCCCTGGACGAAGAGCTTTAGCAACCGACTCAAAAAAGGGCTTC
TCAAAGAGCTCTTGTGCAGGACCAATTGGATCAGAAGAGTCCACTATAAC
TGCATCATATGTTCCTTCAGGAACAGCCTTCAAGAACGCAACTCCATCAC
CAATATGAAGTGTCACACGAGGATCCTCAAACCCAACAGCTACATCAGGG
AAAAATTGTTTAGAGACATCAACTACCATTTTATCAATTTCACAGATATC
AATCT
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