CF833933

Overview
NameCF833933
Unique NameCF833933
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1842 contig Csv1_Contig1842:28..643. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF833933 vs. ExPASy Swiss-Prot
Match: YGL4_SCHPO (Uncharacterized protein C216.04c OS=Schizosaccharomyces pombe GN=SPBC216.04c PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.608e-33
Identity = 62/126 (49.21%), Postives = 85/126 (67.46%), Query Frame = -1
Query:  209 VQKTEEEWRAIFSPEQFRIVRQKGTDPRGTGEYNKLYA-DGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLSGAINRSPDPDG--RRTEITCAACGGHLGHVFKGEGFKTPTDDRHCVNSVSIKF 577
            ++K+E+EW+    PE++RI+RQKGT+  G G +   +   G + CA C   LYK+ TKF+S CGWPAF++ L G + R  D      R E  CA CGGHLGH+FKGEG+  PTD+RHC+NS S++F
Sbjct:    5 LEKSEDEWKKELGPEKYRIMRQKGTEHPGAGRFTHQFPKQGVFVCAACKELLYKASTKFESHCGWPAFFDNLPGKVKRIEDNSYGMHRVEAVCANCGGHLGHIFKGEGYSNPTDERHCINSASLEF 130          
BLAST of CF833933 vs. ExPASy Swiss-Prot
Match: MSRB_LEIXX (Peptide methionine sulfoxide reductase msrB OS=Leifsonia xyli subsp. xyli GN=msrB PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.274e-30
Identity = 65/130 (50.00%), Postives = 85/130 (65.38%), Query Frame = -1
Query:  197 VQKTEEEWRAIFSPEQFRIVRQKGTDPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGL-SGAINRSPDP--DGRRTEITCAACGGHLGHVFKGEGFKTPTDDRHCVNSVSIKFIPGD 577
            + K++EEWR   +PEQ+ ++RQ GT+   TGE       G Y CA CG  L++S TKFDSGCGWP+FYE +   A+    D      RTE+ CA CG HLGHVF  +GF+TPT DR+C+NS+S+ F P D
Sbjct:   10 IAKSDEEWRRELTPEQYGVLRQAGTEQPWTGELLDESRAGVYACAACGAELFRSGTKFDSGCGWPSFYESVRPEAVELLEDTRLGITRTEVRCANCGSHLGHVFP-DGFRTPTGDRYCMNSISLDFQPED 138          
BLAST of CF833933 vs. ExPASy Swiss-Prot
Match: MSRB_METTH (Peptide methionine sulfoxide reductase msrB OS=Methanobacterium thermoautotrophicum GN=msrB PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.656e-28
Identity = 59/132 (44.70%), Postives = 82/132 (62.12%), Query Frame = -1
Query:  197 DSVQKTEEEWRAIFSPEQFRIVRQKGTDPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLSG---AINRSPDPDGRRTEITCAACGGHLGHVFKGEGFKTPTDDRHCVNSVSIKFIPGD 583
            + ++ +++EWR I  PE FR+ R+ GT+P  TG+Y+ L+ DG Y C  CGT L+ S TKFDSG GWP+FY+ +S     +         R E+ CA C  HLGHVF  +    PT  R+C+NS ++KFIP D
Sbjct:   19 ERIELSDDEWREILDPEAFRVARKAGTEPPFTGKYHDLHDDGIYRCICCGTDLFDSETKFDSGTGWPSFYDVVSEHNIKLREDRSLGMVRCEVLCARCDAHLGHVF--DDGPRPTGKRYCMNSAALKFIPRD 148          
BLAST of CF833933 vs. ExPASy Swiss-Prot
Match: MSRB_ACAM1 (Peptide methionine sulfoxide reductase msrB OS=Acaryochloris marina (strain MBIC 11017) GN=msrB PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.009e-27
Identity = 64/130 (49.23%), Postives = 81/130 (62.31%), Query Frame = -1
Query:  203 DSVQKTEEEWRAIFSPEQFRIVRQKGTDPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLSGA-INRSPDPD--GRRTEITCAACGGHLGHVFKGEGFKTPTDDRHCVNSVSIKFIP 583
            + VQKTE+EW A  +PEQFR+ R  GT+   TGEY+ L A G Y C  CGT L+ S TKFDSG GWP+F+       +    D      RTE+ CA C  HLGHVF  +G K PT  R+C+NS ++KF+P
Sbjct:    2 EKVQKTEQEWEAQLTPEQFRVTRHHGTERAFTGEYHDLKAAGTYQCVCCGTELFTSDTKFDSGTGWPSFWAPADKTHVEEKTDRSLFMVRTEVLCAVCDAHLGHVF-NDGPK-PTGLRYCMNSAALKFVP 129          
BLAST of CF833933 vs. ExPASy Swiss-Prot
Match: MSRB_THIDA (Peptide methionine sulfoxide reductase msrB OS=Thiobacillus denitrificans (strain ATCC 25259) GN=msrB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.249e-27
Identity = 62/128 (48.44%), Postives = 79/128 (61.72%), Query Frame = -1
Query:  197 KTEEEWRAIFSPEQFRIVRQKGTDPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLSG-AINRSPDPDGR--RTEITCAACGGHLGHVFKGEGFKTPTDDRHCVNSVSIKFIPGD 571
            KT+ +WRA  SPEQ+RI+R++GT+   TGEY   +A+G Y CA CG  L+ S  KFDSG GWP+FYE L+  A+    D      RTE  C+ C  HLGHVF       PT  R+C+NS S+ F P D
Sbjct:    7 KTDAQWRAELSPEQYRILREQGTERAFTGEYWDHHANGEYRCAACGAPLFSSSAKFDSGTGWPSFYEALNAQAVRERTDTTHGMVRTEALCSRCNSHLGHVFPDG--PPPTGLRYCINSASLSFHPKD 132          
BLAST of CF833933 vs. ExPASy Swiss-Prot
Match: MSRB_PSEU2 (Peptide methionine sulfoxide reductase msrB OS=Pseudomonas syringae pv. syringae (strain B728a) GN=msrB PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.010e-27
Identity = 60/130 (46.15%), Postives = 78/130 (60.00%), Query Frame = -1
Query:  203 DSVQKTEEEWRAIFSPEQFRIVRQKGTDPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGL--SGAINRSPDPDGR-RTEITCAACGGHLGHVFKGEGFKTPTDDRHCVNSVSIKFIP 583
            D +QKT EEW+ +  PEQ+ + R KGT+   +G+Y+K+  DG Y+C  C   L+ S TKFDSGCGWP+FY  L  S  I       G  RTE+ CA C  HLGHVF       PT  R+C+NSV +  +P
Sbjct:    2 DKLQKTLEEWKQMLDPEQYNVCRLKGTERPFSGKYDKVKTDGIYHCICCDEPLFDSTTKFDSGCGWPSFYAPLENSAVIEVRDMSHGMIRTEVVCAKCDAHLGHVFPDG--PPPTGLRYCINSVCLDLVP 129          
BLAST of CF833933 vs. ExPASy Swiss-Prot
Match: MSRB_PSEFS (Peptide methionine sulfoxide reductase msrB OS=Pseudomonas fluorescens (strain SBW25) GN=msrB PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.010e-27
Identity = 57/130 (43.85%), Postives = 78/130 (60.00%), Query Frame = -1
Query:  203 DSVQKTEEEWRAIFSPEQFRIVRQKGTDPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLSGAIN---RSPDPDGRRTEITCAACGGHLGHVFKGEGFKTPTDDRHCVNSVSIKFIP 583
            + +QKT +EW+A+  PEQ+ + R KGT+   +G+YN    DG Y+C  C   L+ S TKFDSGCGWP+FY  ++ +     R       RTE+TCA C  HLGHVF       PT  R+C+NSV +  +P
Sbjct:    2 EKLQKTVDEWKAMLDPEQYNVCRLKGTERPFSGKYNATKTDGVYHCICCNAPLFDSTTKFDSGCGWPSFYAPIADSAMVEIRDVSHGMIRTEVTCAKCDAHLGHVFPDG--PPPTGLRYCINSVCLDLVP 129          
BLAST of CF833933 vs. ExPASy Swiss-Prot
Match: MSRB_PSEP1 (Peptide methionine sulfoxide reductase msrB OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=msrB PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.543e-27
Identity = 60/130 (46.15%), Postives = 80/130 (61.54%), Query Frame = -1
Query:  197 VQKTEEEWRAIFSPEQFRIVRQKGTDPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGL--SGAINRSPDPDGR-RTEITCAACGGHLGHVFKGEGFKTPTDDRHCVNSVSIKFIPGD 577
            ++KT +EWR++  PEQ+++ R KGT+   +G+YN    DG Y+C  CG AL+ + TKFD+GCGWP+FY  +  S  I       G  RTE+TCA C  HLGHVF       PT  R+C+NSV I   P D
Sbjct:    4 IEKTLDEWRSMLDPEQYQVCRLKGTERPFSGKYNSERRDGIYHCICCGLALFDAQTKFDAGCGWPSFYAPIEDSAMIEIRDTSHGMIRTEVTCARCDAHLGHVFPDG--PPPTGLRYCINSVCIDLRPRD 131          
BLAST of CF833933 vs. ExPASy Swiss-Prot
Match: MSRB_LEPIN (Peptide methionine sulfoxide reductase msrB OS=Leptospira interrogans GN=msrB PE=3 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 6.543e-27
Identity = 59/126 (46.83%), Postives = 80/126 (63.49%), Query Frame = -1
Query:  209 VQKTEEEWRAIFSPEQFRIVRQKGTDPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGL-SGAINRSPDPDG--RRTEITCAACGGHLGHVFKGEGFKTPTDDRHCVNSVSIKF 577
            V K++E+W+   +PEQ+RI+RQKGT+   TG   K    G Y CA CG  L+ S TK++SG GWP+FY+ +  G +++  D      RTEI C+ CGGHLGHVF       PT  R+C+NS S+KF
Sbjct:    6 VNKSDEDWKKELTPEQYRILRQKGTEMAFTGALYKNQDKGTYVCAACGAVLFSSDTKYESGSGWPSFYQPVKDGVVDKQKDSSHGMERTEILCSKCGGHLGHVFNDG--PRPTGLRYCINSASLKF 129          
BLAST of CF833933 vs. ExPASy Swiss-Prot
Match: MSRB_LEPIC (Peptide methionine sulfoxide reductase msrB OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=msrB PE=3 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 6.543e-27
Identity = 59/126 (46.83%), Postives = 80/126 (63.49%), Query Frame = -1
Query:  209 VQKTEEEWRAIFSPEQFRIVRQKGTDPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGL-SGAINRSPDPDG--RRTEITCAACGGHLGHVFKGEGFKTPTDDRHCVNSVSIKF 577
            V K++E+W+   +PEQ+RI+RQKGT+   TG   K    G Y CA CG  L+ S TK++SG GWP+FY+ +  G +++  D      RTEI C+ CGGHLGHVF       PT  R+C+NS S+KF
Sbjct:    6 VNKSDEDWKKELTPEQYRILRQKGTEMAFTGALYKNQDKGTYVCAACGAVLFSSDTKYESGSGWPSFYQPVKDGVVDKQKDSSHGMERTEILCSKCGGHLGHVFNDG--PRPTGLRYCINSASLKF 129          
The following BLAST results are available for this feature:
BLAST of CF833933 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
YGL4_SCHPO1.608e-3349.21Uncharacterized protein C216.04c OS=Schizosaccharo... [more]
MSRB_LEIXX1.274e-3050.00Peptide methionine sulfoxide reductase msrB OS=Lei... [more]
MSRB_METTH2.656e-2844.70Peptide methionine sulfoxide reductase msrB OS=Met... [more]
MSRB_ACAM11.009e-2749.23Peptide methionine sulfoxide reductase msrB OS=Aca... [more]
MSRB_THIDA2.249e-2748.44Peptide methionine sulfoxide reductase msrB OS=Thi... [more]
MSRB_PSEU25.010e-2746.15Peptide methionine sulfoxide reductase msrB OS=Pse... [more]
MSRB_PSEFS5.010e-2743.85Peptide methionine sulfoxide reductase msrB OS=Pse... [more]
MSRB_PSEP16.543e-2746.15Peptide methionine sulfoxide reductase msrB OS=Pse... [more]
MSRB_LEPIN6.543e-2746.83Peptide methionine sulfoxide reductase msrB OS=Lep... [more]
MSRB_LEPIC6.543e-2746.83Peptide methionine sulfoxide reductase msrB OS=Lep... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04I22_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04I22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833933 ID=CF833933; Name=CF833933; organism=Citrus sinensis; type=EST; length=616bp
TTTTTTTTTTTTTTTTTGCAAACCAAACAAAGTGGTTTATACTATCGCTT
AGGCTAATATTGGCCGCGTAATAATTATACAAACAACACCATGTCTAGGA
CATTAAAGCCAAAAACAATTGGCAGAAATGACAAACAGTCAAATCTTATT
CAACAACCCCATGACAGTCTTACATTCTTCATGATGAAGCAGGAGCATCA
CCTGGAATAAACTTAATTGAAACACTATTGACACAGTGGCGGTCATCTGT
AGGCGTTTTGAATCCCTCCCCTTTGAAGACGTGACCCAAGTGACCCCCGC
AAGCAGCACAAGTTATCTCGGTTCTCCTTCCATCAGGATCAGGGGAGCGA
TTTATGGCTCCAGAAAGACCTTCATAAAAAGCTGGCCACCCACATCCAGA
ATCGAATTTGGTAACAGACTTGTAAAGCGCAGTTCCACAGCCAGCACAGT
TGTAAAACCCATCCGCATACAACTTGTTGTACTCCCCAGTTCCTCGCGGA
TCGGTTCCTTTCTGGCGTACAATCCTAAACTGCTCGGGGGAGAAAATGGC
CCGCCATTCTTCCTCGGTTTTCTGAACGGAATCTGCTGCTGCAGTCATGG
GGTTTGGTTTCAATCT
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