CF833936

Overview
NameCF833936
Unique NameCF833936
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF833936_ssr379 microsatellite CF833936_ssr379:379..390. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2967 contig Csv1_Contig2967:40..839. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF833936 vs. ExPASy Swiss-Prot
Match: GCSH_FLAPR (Glycine cleavage system H protein, mitochondrial OS=Flaveria pringlei GN=GDCSH PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.396e-49
Identity = 97/158 (61.39%), Postives = 118/158 (74.68%), Query Frame = -2
Query:  285 LWASRAESYLRISV--------FHRGFSSVIKDLKYADSHEWVKVDGNCAAIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKDTSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNGGELKKLMDADQYTKFCEEEDSKH 734
            +WAS   + LR+S           R FSSV+  LKYA+SHEWVK +G+ A IGITDHAQDHLG+VV+V+LPE G +V +   FGAVESVK TSDVNSP+SG++VEVN +LS +P L+NSSPYEDGW+IKV+  N  EL  LM A +YTKFCEEEDS H
Sbjct:    5 IWASSTANALRLSSATRPHFSPLSRCFSSVLDGLKYANSHEWVKHEGSVATIGITDHAQDHLGEVVFVDLPEAGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLSETPGLINSSPYEDGWMIKVKPSNPSELDSLMGAKEYTKFCEEEDSAH 162          
BLAST of CF833936 vs. ExPASy Swiss-Prot
Match: GCSH_FLAAN (Glycine cleavage system H protein, mitochondrial OS=Flaveria anomala GN=GDCSH PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 7.565e-49
Identity = 96/158 (60.76%), Postives = 118/158 (74.68%), Query Frame = -2
Query:  285 LWASRAESYLRISV--------FHRGFSSVIKDLKYADSHEWVKVDGNCAAIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKDTSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNGGELKKLMDADQYTKFCEEEDSKH 734
            +WAS   + LR+S           R FSSV+  LKYA+SHEWVK +G+ A IGITDHAQDHLG+VV+V+LPE G +V +   FGAVESVK TSDVNSP+SG++VEVN +LS +P L+NSSPYEDGW+IKV+  N  EL  LM A +YTKFCEEED+ H
Sbjct:    5 MWASSTANALRLSSATRPHFSPLSRCFSSVLDGLKYANSHEWVKHEGSVATIGITDHAQDHLGEVVFVDLPEAGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLSETPGLINSSPYEDGWMIKVKPSNPSELDSLMGAKEYTKFCEEEDAAH 162          
BLAST of CF833936 vs. ExPASy Swiss-Prot
Match: GCSH_PEA (Glycine cleavage system H protein, mitochondrial OS=Pisum sativum GN=GDCSH PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.577e-46
Identity = 92/161 (57.14%), Postives = 117/161 (72.67%), Query Frame = -2
Query:  285 LWASRAESYLRISV-----------FHRGFSSVIKDLKYADSHEWVKVDGNCAAIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKDTSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNGGELKKLMDADQYTKFCEEEDSKH 734
            +WAS   + L++S              R FS+V+  LKYA SHEWVK +G+ A IGITDHAQDHLG+VV+VELPE GV+V +   FGAVESVK TSDVNSP+SG+V+EVN  L+  P L+NSSPYEDGW+IK++  +  EL+ L+ A +YTKFCEEED+ H
Sbjct:    5 MWASSTANALKLSSSSRLHLSPTFSISRCFSNVLDGLKYAPSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKIKPTSPDELESLLGAKEYTKFCEEEDAAH 165          
BLAST of CF833936 vs. ExPASy Swiss-Prot
Match: GCSH_ORYSJ (Glycine cleavage system H protein, mitochondrial OS=Oryza sativa subsp. japonica GN=GDCSH PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.514e-46
Identity = 93/159 (58.49%), Postives = 115/159 (72.33%), Query Frame = -2
Query:  291 LWASRAESYLRISV-----------FHRGFSSVIKDLKYADSHEWVKVDGNCAAIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKDTSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNGGELKKLMDADQYTKFCEEEDS 734
            LWAS A + L+IS              R FS+V+  LKY+ SHEWVK DG+ A IGITDHAQ HLG+VV+VELPE G  V Q  +FG VESVK TSD+NSP+SG+VVEVN++LS +P L+NSSPYEDGW+IKV+  +  EL  L+D  +YTK CEEED+
Sbjct:    5 LWASSAANALKISCSGATRAAPAYSISRYFSTVLDGLKYSSSHEWVKNDGSVATIGITDHAQGHLGEVVFVELPEAGAKVSQGGAFGNVESVKATSDINSPISGEVVEVNDKLSETPGLINSSPYEDGWMIKVKPSSPSELDALLDPAKYTKHCEEEDA 163          
BLAST of CF833936 vs. ExPASy Swiss-Prot
Match: GCSH_ORYSI (Glycine cleavage system H protein, mitochondrial OS=Oryza sativa subsp. indica GN=GDCSH PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.514e-46
Identity = 93/159 (58.49%), Postives = 115/159 (72.33%), Query Frame = -2
Query:  291 LWASRAESYLRISV-----------FHRGFSSVIKDLKYADSHEWVKVDGNCAAIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKDTSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNGGELKKLMDADQYTKFCEEEDS 734
            LWAS A + L+IS              R FS+V+  LKY+ SHEWVK DG+ A IGITDHAQ HLG+VV+VELPE G  V Q  +FG VESVK TSD+NSP+SG+VVEVN++LS +P L+NSSPYEDGW+IKV+  +  EL  L+D  +YTK CEEED+
Sbjct:    5 LWASSAANALKISCSGATRAAPAYSISRYFSTVLDGLKYSSSHEWVKNDGSVATIGITDHAQGHLGEVVFVELPEAGAKVSQGGAFGNVESVKATSDINSPISGEVVEVNDKLSETPGLINSSPYEDGWMIKVKPSSPSELDALLDPAKYTKHCEEEDA 163          
BLAST of CF833936 vs. ExPASy Swiss-Prot
Match: GCSH2_ARATH (Probable glycine cleavage system H protein 2, mitochondrial OS=Arabidopsis thaliana GN=At1g32470 PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.514e-46
Identity = 91/162 (56.17%), Postives = 119/162 (73.46%), Query Frame = -2
Query:  285 LWASRAESYLRISV------------FHRGFSSVIKDLKYADSHEWVKVDGNCAAIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKDTSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNGGELKKLMDADQYTKFCEEEDSKH 734
            +WAS   + L++S               R FSSV++ LKYA+SHEWVK +G+ A IGITDHAQDHLG+VV+VELPE   +V ++ SFGAVESVK TS++ SP+SG+V+EVN +L+ SP L+NSSPYEDGW+IKV+  +  EL+ LM   +YTKFCEEED+ H
Sbjct:    5 MWASSTANALKLSSSASKSHLLPAFSISRCFSSVLEGLKYANSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEANSSVSKEKSFGAVESVKATSEILSPISGEVIEVNTKLTESPGLINSSPYEDGWMIKVKPSSPAELEALMGPKEYTKFCEEEDAAH 166          
BLAST of CF833936 vs. ExPASy Swiss-Prot
Match: GCSH1_ARATH (Glycine cleavage system H protein 1, mitochondrial OS=Arabidopsis thaliana GN=GDCSH PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.994e-46
Identity = 88/150 (58.67%), Postives = 119/150 (79.33%), Query Frame = -2
Query:  285 LWASRAESYLRISVFHRGFSSVIKDLKYADSHEWVKVDGNCAAIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKDTSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNGGELKKLMDADQYTKFCEEEDSKH 734
            L +S ++S+L    F R FS+V++ LKYA+SHEWVK +G+ A IGIT HAQDHLG+VV+VELPE   +V ++ SFGAVESVK TS++ SP+SG+++EVN++L+ SP L+NSSPYEDGW+IKV+  +  EL+ LM   +YTKFCEEED+ H
Sbjct:   16 LSSSVSKSHLSPFSFSRCFSTVLEGLKYANSHEWVKHEGSVATIGITAHAQDHLGEVVFVELPEDNTSVSKEKSFGAVESVKATSEILSPISGEIIEVNKKLTESPGLINSSPYEDGWMIKVKPSSPAELESLMGPKEYTKFCEEEDAAH 165          
BLAST of CF833936 vs. ExPASy Swiss-Prot
Match: GCSH_FLATR (Glycine cleavage system H protein, mitochondrial OS=Flaveria trinervia GN=GDCSH PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 5.074e-45
Identity = 93/156 (59.62%), Postives = 113/156 (72.44%), Query Frame = -2
Query:  297 LWASRAESYLRISV--------FHRGFSS--VIKDLKYADSHEWVKVDGNCAAIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKDTSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNGGELKKLMDADQYTKFCEEE 734
            +WAS     LR+S           R FSS  V+  LKYA+SHEWVK +G+ A IGITDHAQDHLG+VV+VELPEVG +V +   FGAVESVK TSDVNSP+SG++VEVN +L+ +P L+N SPYEDGW+IKV+  N  EL  LM   +YTKFCEEE
Sbjct:    5 IWASSTAKALRLSSASRPHFSPLFRCFSSAAVLDGLKYANSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEVGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLTKTPGLINKSPYEDGWMIKVKPSNPSELDSLMGPKEYTKFCEEE 160          
BLAST of CF833936 vs. ExPASy Swiss-Prot
Match: GCSH_FLAPU (Glycine cleavage system H protein, mitochondrial (Fragment) OS=Flaveria pubescens GN=GDCSH PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.749e-43
Identity = 87/148 (58.78%), Postives = 109/148 (73.65%), Query Frame = -2
Query:  315 LWASRAESYLRISV--------FHRGFSSVIKDLKYADSHEWVKVDGNCAAIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKDTSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNGGELKKLMDADQYT 734
            +WAS   + LR+S           R FSSV+  LKYA+SHEWVK +G+ A +GITDHAQDHLG+VV+V+LPE G +V +   FGAVESVK TSDVNSP+SG++VEVN +LS +P L+NSSPYEDGW+IKV+  N  EL  LM A +YT
Sbjct:    5 MWASSTANALRLSSATRPHYSPLSRCFSSVLDGLKYANSHEWVKHEGSVATVGITDHAQDHLGEVVFVDLPEAGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLSETPGLINSSPYEDGWMIKVKPSNPSELDSLMGAKEYT 152          
BLAST of CF833936 vs. ExPASy Swiss-Prot
Match: GCSH_MESCR (Glycine cleavage system H protein, mitochondrial OS=Mesembryanthemum crystallinum GN=GDCSH PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 8.101e-43
Identity = 90/159 (56.60%), Postives = 111/159 (69.81%), Query Frame = -2
Query:  291 LWASRAESYLRISV-----------FHRGFSSVIKDLKYADSHEWVKVDGNCAAIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKDTSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNGGELKKLMDADQYTKFCEEEDS 734
            +WAS A + L +S              R FS+V+  LKYA SHEWVK  G+ A IGITDHAQ HLGDVV+ ELPE G  V     F +VESVK TSDVNSP+SG++VEVN +LS SP L+NSSPYE+GW++KV+  N  EL+ LM + +YTKFCEEED+
Sbjct:    5 MWASSAANALGVSCAPKSHLLPALSLSRCFSTVLDGLKYASSHEWVKHGGSVATIGITDHAQGHLGDVVFAELPEGGA-VSAGKPFASVESVKATSDVNSPISGEIVEVNTKLSDSPGLLNSSPYEEGWMVKVKPSNPAELESLMGSKEYTKFCEEEDA 162          
The following BLAST results are available for this feature:
BLAST of CF833936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 461
Match NameE-valueIdentityDescription
GCSH_FLAPR3.396e-4961.39Glycine cleavage system H protein, mitochondrial O... [more]
GCSH_FLAAN7.565e-4960.76Glycine cleavage system H protein, mitochondrial O... [more]
GCSH_PEA1.577e-4657.14Glycine cleavage system H protein, mitochondrial O... [more]
GCSH_ORYSJ3.514e-4658.49Glycine cleavage system H protein, mitochondrial O... [more]
GCSH_ORYSI3.514e-4658.49Glycine cleavage system H protein, mitochondrial O... [more]
GCSH2_ARATH3.514e-4656.17Probable glycine cleavage system H protein 2, mito... [more]
GCSH1_ARATH5.994e-4658.67Glycine cleavage system H protein 1, mitochondrial... [more]
GCSH_FLATR5.074e-4559.62Glycine cleavage system H protein, mitochondrial O... [more]
GCSH_FLAPU4.749e-4358.78Glycine cleavage system H protein, mitochondrial (... [more]
GCSH_MESCR8.101e-4356.60Glycine cleavage system H protein, mitochondrial O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04I24_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04I24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833936 ID=CF833936; Name=CF833936; organism=Citrus sinensis; type=EST; length=807bp
TTTTTTTTTTTTTTTATCAAACCCTTAATAAATTTCAGACCACCTCACGT
TTACATCACTCCCACACCCCAAATTATTATTCTCAGTTCAAATAGAAATA
TTCCACCAGACTCAATTGCCCTGAAGACAGTAGGTGGAGACATAGAAGTA
CCTAGTTGGATAAAAACATCCAGAAAGAAAATGTGCACTGTTTGGATTCC
TGGAGACATAATGGTTTCTCCGTGCACGGCATACGTCATTCTGGAAGGGT
GCTGATAATTCCTACGCGGCCAGAGGTTCACTCAGTGTTTTGAATCTTCT
TCTTCACAGAACTTGGTGTATTGATCAGCATCCATCAACTTCTTCAATTC
ACCACCATTGTCCATCTCCACTTTTATAATCCATCCATCCTCATATGGGC
TTGAGTTGACCAAAGCAGGTGAACTGCTGAGCTCTTCATTAACTTCAACG
ACTTTCCCAGAAACAGGAGAATTAACATCACTAGTATCCTTGACACTTTC
AACTGCACCAAAGCTGGCATCTTGCTTTACTGTAACCCCTACCTCTGGTA
ATTCAACATACACAACATCGCCTAAATGATCTTGAGCATGGTCGGTTATA
CCAATGGCTGCACAGTTACCATCGACCTTAACCCATTCATGAGAGTCAGC
ATACTTTAGATCCTTTATAACAGAAGAGAATCCTCTGTGGAAGACAGAGA
TCCTGAGGTACGATTCAGCCCTTGAAGCCCACAACAACCTTGAAGCCATG
TGTCTTGTTTCTGACTGCACTTTCGGAACGCACTTCACAGACTATTACAA
CAAAATT
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