CF833992

Overview
NameCF833992
Unique NameCF833992
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10563 contig Csv1_Contig10563:523..1296. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF833992 vs. ExPASy Swiss-Prot
Match: HFA4A_ARATH (Heat stress transcription factor A-4a OS=Arabidopsis thaliana GN=HSFA4A PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.668e-48
Identity = 92/130 (70.77%), Postives = 102/130 (78.46%), Query Frame = -3
Query:   17 SSNSLPPFLAKTYEMXXXXXXXXXXXXXXSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQNLHGQGTPLTESERQGLKDDIERL 406
            SS+SLPPFL KTYEM              SNKSFIVWNPP+F+RDLLP++FKHNNFSSFIRQLNTYGFRK DPEQWEFAN+DFVRGQP  +KNIHRRKPVHSHS  NL  Q  PLT+SER  + + IERL
Sbjct:    9 SSSSLPPFLTKTYEMVDDSSSDSIVSWSQSNKSFIVWNPPEFSRDLLPRFFKHNNFSSFIRQLNTYGFRKADPEQWEFANDDFVRGQPHLMKNIHRRKPVHSHSLPNLQAQLNPLTDSERVRMNNQIERL 138          
BLAST of CF833992 vs. ExPASy Swiss-Prot
Match: HFA4C_ARATH (Heat stress transcription factor A-4c OS=Arabidopsis thaliana GN=HSFA4C PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.259e-46
Identity = 90/136 (66.18%), Postives = 104/136 (76.47%), Query Frame = -3
Query:   17 MDDGQGSSNSLPPFLAKTYEMXXXXXXXXXXXXXXSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQNLHGQGTPLTESERQGLKDDIERL 424
            MD+  G S+SLPPFL KTYEM              +NKSFIV NP +F+RDLLP++FKH NFSSFIRQLNTYGFRKVDPE+WEF N+DFVRG+P  +KNIHRRKPVHSHS  NL  Q  PLTESER+ ++D IERL
Sbjct:    1 MDENNGGSSSLPPFLTKTYEMVDDSSSDSVVAWSENNKSFIVKNPAEFSRDLLPRFFKHKNFSSFIRQLNTYGFRKVDPEKWEFLNDDFVRGRPYLMKNIHRRKPVHSHSLVNLQAQ-NPLTESERRSMEDQIERL 135          
BLAST of CF833992 vs. ExPASy Swiss-Prot
Match: HFA4B_ORYSJ (Heat stress transcription factor A-4b OS=Oryza sativa subsp. japonica GN=HSFA4B PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.375e-43
Identity = 85/135 (62.96%), Postives = 101/135 (74.81%), Query Frame = -3
Query:   17 DGQGSSNSLPPFLAKTYEMXXXXXXXXXXXXXXSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQNLHGQGT-PLTESERQGLKDDIERL 418
            +G G   SLPPFL+KTYEM              +  SF+V N P+F RDLLPKYFKHNNFSSF+RQLNTYGFRKVDPEQWEFANEDF++GQ  RLKNIHRRKP+ SHS+   H QG  PLT++ER+  +++IERL
Sbjct:    2 EGGGGGGSLPPFLSKTYEMVDDPSTDAVVGWTPAGTSFVVANQPEFCRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPEQWEFANEDFIKGQRHRLKNIHRRKPIFSHSS---HSQGAGPLTDNERKDYEEEIERL 133          
BLAST of CF833992 vs. ExPASy Swiss-Prot
Match: HFA4D_ORYSJ (Heat stress transcription factor A-4d OS=Oryza sativa subsp. japonica GN=HSFA4D PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.519e-43
Identity = 86/134 (64.18%), Postives = 97/134 (72.39%), Query Frame = -3
Query:   17 GQGSSNSLPPFLAKTYEMXXXXXXXXXXXXXXSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQN-LHGQGTPLTESERQGLKDDIERL 415
            G G     PPFL KTYEM                 SF+VWNP DF+RDLLPKYFKHNNFSSFIRQLNTYGFRK+DPE+WEFANEDF+RG    LKNIHRRKPVHSHS QN ++G   PL ESER+ L+++I RL
Sbjct:   11 GGGGGGGPPPFLIKTYEMVEDAATNHVVSWGPGGASFVVWNPLDFSRDLLPKYFKHNNFSSFIRQLNTYGFRKIDPERWEFANEDFIRGHTHLLKNIHRRKPVHSHSLQNQING---PLAESERRELEEEINRL 141          
BLAST of CF833992 vs. ExPASy Swiss-Prot
Match: HSF8_SOLLC (Heat shock factor protein HSF8 OS=Solanum lycopersicum GN=HSF8 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.794e-36
Identity = 74/145 (51.03%), Postives = 93/145 (64.14%), Query Frame = -3
Query:   17 SSNSLPPFLAKTYEMXXXXXXXXXXXXXXSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQNLHGQGT---------------PLTESERQGLKDDIERL 406
            S+N+ PPFL KTY+M              +N SF+VW+PP+FA+DLLPKYFKHNNFSSF+RQLNTYGFRKVDP++WEFANE F+RGQ   LK+I RRKP H H+ Q     G                   E  + GL++++ERL
Sbjct:   33 SANAPPPFLVKTYDMVDDPSTDKIVSWSPTNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSISRRKPAHGHAQQQQQPHGNAQQQMQPPGHSASVGACVEVGKFGLEEEVERL 177          
BLAST of CF833992 vs. ExPASy Swiss-Prot
Match: HSF8_SOLPE (Heat shock factor protein HSF8 OS=Solanum peruvianum GN=HSF8 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.060e-36
Identity = 74/145 (51.03%), Postives = 93/145 (64.14%), Query Frame = -3
Query:   17 SSNSLPPFLAKTYEMXXXXXXXXXXXXXXSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQNLHGQG---------------TPLTESERQGLKDDIERL 406
            S+N+ PPFL KTY+M              +N SF+VW+PP+FA+DLLPKYFKHNNFSSF+RQLNTYGFRKVDP++WEFANE F+RGQ   LK+I RRKP H H+ Q     G                   E  + GL++++ERL
Sbjct:   35 SANAPPPFLVKTYDMVDDPSTDKIVSWSPTNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSISRRKPAHGHAQQQQQPHGHAQQQMQPPGHSASVGACVEVGKFGLEEEVERL 179          
BLAST of CF833992 vs. ExPASy Swiss-Prot
Match: HFA1D_ARATH (Heat stress transcription factor A-1d OS=Arabidopsis thaliana GN=HSFA1D PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 8.902e-36
Identity = 75/138 (54.35%), Postives = 97/138 (70.29%), Query Frame = -3
Query:   17 SSNSLPPFLAKTYEMXXXXXXXXXXXXXXSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHS-----NQNLHGQGTPLT---ESERQGLKDDIERL 406
            SSN+ PPFL+KTY+M              +N SFIVW PP+FARDLLPK FKHNNFSSF+RQLNTYGFRKVDP++WEFANE F+RGQ   L++I RRKP H        +Q+ +GQ + ++   E  + GL++++ERL
Sbjct:   31 SSNAPPPFLSKTYDMVDDHNTDSIVSWSANNNSFIVWKPPEFARDLLPKNFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLQSITRRKPAHGQGQGHQRSQHSNGQNSSVSACVEVGKFGLEEEVERL 168          
BLAST of CF833992 vs. ExPASy Swiss-Prot
Match: HFA1A_ARATH (Heat stress transcription factor A-1a OS=Arabidopsis thaliana GN=HSFA1A PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 7.536e-35
Identity = 73/144 (50.69%), Postives = 97/144 (67.36%), Query Frame = -3
Query:   17 SSNSLPP-FLAKTYEMXXXXXXXXXXXXXXSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQNLHGQGTPLTESE-------------RQGLKDDIERL 406
            ++NSLPP FL+KTY+M              +N SFIVW+PP+F+RDLLPKYFKHNNFSSF+RQLNTYGFRKVDP++WEFANE F+RGQ   LK I RRK V  H + + + Q   L++ +             + GL++++E+L
Sbjct:   45 NANSLPPPFLSKTYDMVEDPATDAIVSWSPTNNSFIVWDPPEFSRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKKISRRKSVQGHGSSSSNPQSQQLSQGQGSMAALSSCVEVGKFGLEEEVEQL 188          
BLAST of CF833992 vs. ExPASy Swiss-Prot
Match: HSFA5_ORYSJ (Heat stress transcription factor A-5 OS=Oryza sativa subsp. japonica GN=HSFA5 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.885e-34
Identity = 75/132 (56.82%), Postives = 89/132 (67.42%), Query Frame = -3
Query:   17 GSSNSLPPFLAKTYEMXXXXXXXXXXXXXXSNK-SFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQNLHGQGTPLTESERQGLKDDIERL 409
            G      PFL KTYEM              ++  SF+VWN P+FA  LLP YFKH+NFSSFIRQLNTYGFRK+DPE+WEFANE F++GQ   LKNIHRRKP+HSHS    H  G  L ++ER   +D+IERL
Sbjct:   14 GGGGGPAPFLLKTYEMVDDPSTDAVVSWSDASDASFVVWNHPEFAARLLPAYFKHSNFSSFIRQLNTYGFRKIDPERWEFANEYFIKGQKHLLKNIHRRKPIHSHS----HPPGA-LPDNERAIFEDEIERL 140          
BLAST of CF833992 vs. ExPASy Swiss-Prot
Match: HSFA1_ORYSJ (Heat stress transcription factor A-1 OS=Oryza sativa subsp. japonica GN=HSFA1 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.380e-34
Identity = 72/135 (53.33%), Postives = 90/135 (66.67%), Query Frame = -3
Query:   17 GSSNSLPPFLAKTYEMXXXXXXXXXXXXXXSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSN-QNLHGQGTPL---TESERQGLKDDIERL 409
            G + + PPFL KTYEM               N SF+VWN P+FARDLLPKYFKH+NFSSF+RQLNTYGFRKVDP++WEFANE F+RGQ   LK I+RRKP H ++  Q       P+    E  + G++++IE L
Sbjct:   30 GVATAPPPFLMKTYEMVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKTINRRKPTHGNNQVQQPQLPAAPVPACVEVGKFGMEEEIEML 164          
The following BLAST results are available for this feature:
BLAST of CF833992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
HFA4A_ARATH2.668e-4870.77Heat stress transcription factor A-4a OS=Arabidops... [more]
HFA4C_ARATH4.259e-4666.18Heat stress transcription factor A-4c OS=Arabidops... [more]
HFA4B_ORYSJ3.375e-4362.96Heat stress transcription factor A-4b OS=Oryza sat... [more]
HFA4D_ORYSJ7.519e-4364.18Heat stress transcription factor A-4d OS=Oryza sat... [more]
HSF8_SOLLC1.794e-3651.03Heat shock factor protein HSF8 OS=Solanum lycopers... [more]
HSF8_SOLPE3.060e-3651.03Heat shock factor protein HSF8 OS=Solanum peruvian... [more]
HFA1D_ARATH8.902e-3654.35Heat stress transcription factor A-1d OS=Arabidops... [more]
HFA1A_ARATH7.536e-3550.69Heat stress transcription factor A-1a OS=Arabidops... [more]
HSFA5_ORYSJ4.885e-3456.82Heat stress transcription factor A-5 OS=Oryza sati... [more]
HSFA1_ORYSJ6.380e-3453.33Heat stress transcription factor A-1 OS=Oryza sati... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04L04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04L04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833992 ID=CF833992; Name=CF833992; organism=Citrus sinensis; type=EST; length=774bp
TTTTTTTTTTTTTTTTTAACCTCTCAATATCATCCTTGAGACCCTGTCTT
TCTGATTCAGTTAATGGAGTTCCTTGTCCATGTAGATTCTGATTAGAATG
GCTATGAACTGGCTTTCGTCTATGGATGTTCTTCAAACGTTCAGGCTGAC
CTCTCACAAAATCTTCATTTGCAAATTCCCATTGTTCAGGATCAACTTTT
CTAAAACCATATGTGTTGAGCTGTCTGATGAAGCTTGAGAAGTTATTGTG
CTTAAAGTATTTTGGTAACAAATCCCTAGCAAAATCTGGTGGATTCCACA
CAATAAAGCTCTTATTACTTGAACTCCAGGACACAGTCAAATCTGTCGAA
GAATCATCTACCATCTCATATGTTTTTGCAAGAAAGGGAGGAAGTGAATT
TGAACTACCTTGGCCGTCATCCATCACAAACTAAAGGATCCAATCACGCA
GTCCCCAAACTCAATACCCAAAACTAAACCATAAACCAGTGCAAAATCCT
ATTTCCAGGGAAAGTCAAACACTTAATTTTCTTCAATACAGCAACAGAAT
CTAAGCTGGAAAGCTCAAACTTCTGATTATTAGTAAGCTCAATCAAGAAC
AAACCCTTCTATCGTGTTCATTGACCTCAGAAAGAAACCAAAACCTTAAA
TTCCCATCAACCCAAATCACAAATTTCCAAACGAAAAGCTCCGTATCCTC
AATCAATACAAATCAGATAGCATAAGCATTCTGGAGCCTATTCCAGCAAT
AAAAGCAAAAAATAAAAATAAAAT
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