CF834007
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF834007 vs. ExPASy Swiss-Prot
Match: RL4_PRUAR (60S ribosomal protein L4 OS=Prunus armeniaca GN=RPL4 PE=2 SV=1) HSP 1 Score: 162.925 bits (411), Expect = 1.350e-44 Identity = 90/134 (67.16%), Postives = 97/134 (72.39%), Query Frame = -3 Query: 339 RFIVWSKSAFEKLDEIYGKFDKGSEKKKDYVLPRSKMVNADLARIINSDEVQSVVSPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRVXXXXXXXXXXXKPITKEEAAAIKSAGKAWYQTMI 740 RF+VW+KSAFEKLD IYG FDK SEKK YVLPRSKMVNADLARIINSDEVQSVVSPI+ KRA PYAKTARRMSLLAEA+RV KPI+KEEA+ IK+AGKAWYQTMI Sbjct: 256 RFVVWTKSAFEKLDSIYGSFDKVSEKKNGYVLPRSKMVNADLARIINSDEVQSVVSPIQEGSKRAPLKKNPLRILNTMLKLNPYAKTARRMSLLAEAERVKAKKEKLDKKRKPISKEEASTIKAAGKAWYQTMI 389 HSP 2 Score: 38.5058 bits (88), Expect = 1.350e-44 Identity = 16/19 (84.21%), Postives = 17/19 (89.47%), Query Frame = -1 Query: 281 SDSDYPEFENFWKWLGVSQ 337 SDSDY EF+NF KWLGVSQ Sbjct: 390 SDSDYTEFDNFTKWLGVSQ 408
BLAST of CF834007 vs. ExPASy Swiss-Prot
Match: RL4A_ARATH (60S ribosomal protein L4-1 OS=Arabidopsis thaliana GN=RPL4A PE=2 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 5.497e-43 Identity = 84/134 (62.69%), Postives = 98/134 (73.13%), Query Frame = -3 Query: 339 RFIVWSKSAFEKLDEIYGKFDKGSEKKKDYVLPRSKMVNADLARIINSDEVQSVVSPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRVXXXXXXXXXXXKPITKEEAAAIKSAGKAWYQTMI 740 RF++W+KSAFEKL+ IYG F+K SEKKK YVLPR+KMVNADLARIINSDE+QSVV+PIK + KRA PYAKTA+RMSLLAEAQRV K +TKEEA AIK+AGK+WY+TMI Sbjct: 254 RFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEIQSVVNPIKKDAKRAVLKKNPLKNLNVMLKLNPYAKTAKRMSLLAEAQRVKAKKEKLAKKRKTVTKEEALAIKAAGKSWYKTMI 387 HSP 2 Score: 36.965 bits (84), Expect = 5.497e-43 Identity = 15/19 (78.95%), Postives = 16/19 (84.21%), Query Frame = -1 Query: 281 SDSDYPEFENFWKWLGVSQ 337 SDSDY EF+NF KWLG SQ Sbjct: 388 SDSDYTEFDNFTKWLGASQ 406
BLAST of CF834007 vs. ExPASy Swiss-Prot
Match: RL4B_ARATH (60S ribosomal protein L4-2 OS=Arabidopsis thaliana GN=RPL4D PE=1 SV=2) HSP 1 Score: 157.532 bits (397), Expect = 1.585e-42 Identity = 86/134 (64.18%), Postives = 96/134 (71.64%), Query Frame = -3 Query: 339 RFIVWSKSAFEKLDEIYGKFDKGSEKKKDYVLPRSKMVNADLARIINSDEVQSVVSPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRVXXXXXXXXXXXKPITKEEAAAIKSAGKAWYQTMI 740 RF++W+KSAFEKL+ IYG F+K SEKKK YVLPR+KMVNADLARIINSDEVQSVV+PIK KRA PYAKTA+RMSLLAEA RV K +TKEEA AIK+AGKAWYQTMI Sbjct: 255 RFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEVQSVVNPIKDGSKRAVLKKNPLKNLNVMFKLNPYAKTAKRMSLLAEASRVKAKKEKLEKKRKVVTKEEAQAIKAAGKAWYQTMI 388 HSP 2 Score: 36.965 bits (84), Expect = 1.585e-42 Identity = 15/19 (78.95%), Postives = 16/19 (84.21%), Query Frame = -1 Query: 281 SDSDYPEFENFWKWLGVSQ 337 SDSDY EF+NF KWLG SQ Sbjct: 389 SDSDYTEFDNFTKWLGASQ 407
BLAST of CF834007 vs. ExPASy Swiss-Prot
Match: RL4_DICDI (60S ribosomal protein L4 OS=Dictyostelium discoideum GN=rpl4 PE=1 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 5.242e-14 Identity = 35/64 (54.69%), Postives = 46/64 (71.88%), Query Frame = -3 Query: 549 RFIVWSKSAFEKLDEIYGKFDKGSEKKKDYVLPRSKMVNADLARIINSDEVQSVVSPIKTEVKR 740 RFI+W+KSAFE+LD +G F K S +KK Y LPR + NAD+ R++NSDE+Q+ V K VKR Sbjct: 247 RFIIWTKSAFEQLDSTFGTFAKSSAQKKGYTLPRPMIANADIVRLVNSDEIQAAVRASKVVVKR 310
BLAST of CF834007 vs. ExPASy Swiss-Prot
Match: RL4B_XENLA (60S ribosomal protein L4-B (Fragment) OS=Xenopus laevis GN=rpl4-B PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.525e-13 Identity = 39/100 (39.00%), Postives = 56/100 (56.00%), Query Frame = -3 Query: 441 RFIVWSKSAFEKLDEIYGKFDKGSEKKKDYVLPRSKMVNADLARIINSDEVQSVVSPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRV 740 RF +W++SAF KLD++YG + K ++ K DY LP KM N DL RI+ S E+Q + +VKR PYAKTARR ++L + + + Sbjct: 247 RFCIWTESAFRKLDDLYGTWRKSAKLKADYNLPMHKMTNTDLTRILKSQEIQRALRAPNKKVKRRELKKNPLKNLRIMMRLNPYAKTARRHAILQQLENI 346
BLAST of CF834007 vs. ExPASy Swiss-Prot
Match: RL4A_XENLA (60S ribosomal protein L4-A OS=Xenopus laevis GN=rpl4-A PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.525e-13 Identity = 39/100 (39.00%), Postives = 56/100 (56.00%), Query Frame = -3 Query: 441 RFIVWSKSAFEKLDEIYGKFDKGSEKKKDYVLPRSKMVNADLARIINSDEVQSVVSPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRV 740 RF +W++SAF KLD++YG + K ++ K DY LP KM N DL RI+ S E+Q + +VKR PYAKTARR ++L + + + Sbjct: 252 RFCIWTESAFRKLDDLYGTWRKSAKLKADYNLPMHKMTNTDLTRILKSQEIQRALRAPNKKVKRRELKKNPLKNLRIMMRLNPYAKTARRHAILQQLENI 351
BLAST of CF834007 vs. ExPASy Swiss-Prot
Match: RL4_PONAB (60S ribosomal protein L4 OS=Pongo abelii GN=RPL4 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.291e-12 Identity = 37/98 (37.76%), Postives = 56/98 (57.14%), Query Frame = -3 Query: 447 RFIVWSKSAFEKLDEIYGKFDKGSEKKKDYVLPRSKMVNADLARIINSDEVQSVVSPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQ 740 RF +W++SAF KLDE+YG + K + K +Y LP KM+N DL+RI+ S E+Q + + ++ R PYAKT RR ++L +A+ Sbjct: 248 RFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345
BLAST of CF834007 vs. ExPASy Swiss-Prot
Match: RL4_HUMAN (60S ribosomal protein L4 OS=Homo sapiens GN=RPL4 PE=1 SV=5) HSP 1 Score: 73.559 bits (179), Expect = 1.291e-12 Identity = 37/98 (37.76%), Postives = 56/98 (57.14%), Query Frame = -3 Query: 447 RFIVWSKSAFEKLDEIYGKFDKGSEKKKDYVLPRSKMVNADLARIINSDEVQSVVSPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQ 740 RF +W++SAF KLDE+YG + K + K +Y LP KM+N DL+RI+ S E+Q + + ++ R PYAKT RR ++L +A+ Sbjct: 248 RFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345
BLAST of CF834007 vs. ExPASy Swiss-Prot
Match: RL4_RAT (60S ribosomal protein L4 OS=Rattus norvegicus GN=Rpl4 PE=1 SV=3) HSP 1 Score: 73.1738 bits (178), Expect = 1.686e-12 Identity = 44/128 (34.38%), Postives = 65/128 (50.78%), Query Frame = -3 Query: 357 RFIVWSKSAFEKLDEIYGKFDKGSEKKKDYVLPRSKMVNADLARIINSDEVQSVVSPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRVXXXXXXXXXXXKPITKEEAAAIKSAGKA 740 RF +W++SAF KLDE+YG + K + K +Y LP KM+N DL+RI+ S E+Q + + ++ R PYAKT RR ++L +A+ + K EAAA A K+ Sbjct: 248 RFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMMNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARN----------HKLRVKKLEAAAAALAAKS 365
BLAST of CF834007 vs. ExPASy Swiss-Prot
Match: RL4_MOUSE (60S ribosomal protein L4 OS=Mus musculus GN=Rpl4 PE=1 SV=3) HSP 1 Score: 72.7886 bits (177), Expect = 2.202e-12 Identity = 37/98 (37.76%), Postives = 56/98 (57.14%), Query Frame = -3 Query: 447 RFIVWSKSAFEKLDEIYGKFDKGSEKKKDYVLPRSKMVNADLARIINSDEVQSVVSPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQ 740 RF +W++SAF KLDE+YG + K + K +Y LP KM+N DL+RI+ S E+Q + + ++ R PYAKT RR ++L +A+ Sbjct: 248 RFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMMNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345 The following BLAST results are available for this feature:
BLAST of CF834007 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 12
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834007 ID=CF834007; Name=CF834007; organism=Citrus sinensis; type=EST; length=742bpback to top |