CF834007

Overview
NameCF834007
Unique NameCF834007
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11936 contig Csv1_Contig11936:214..954. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834007 vs. ExPASy Swiss-Prot
Match: RL4_PRUAR (60S ribosomal protein L4 OS=Prunus armeniaca GN=RPL4 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.350e-44
Identity = 90/134 (67.16%), Postives = 97/134 (72.39%), Query Frame = -3
Query:  339 RFIVWSKSAFEKLDEIYGKFDKGSEKKKDYVLPRSKMVNADLARIINSDEVQSVVSPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRVXXXXXXXXXXXKPITKEEAAAIKSAGKAWYQTMI 740
            RF+VW+KSAFEKLD IYG FDK SEKK  YVLPRSKMVNADLARIINSDEVQSVVSPI+   KRA                 PYAKTARRMSLLAEA+RV           KPI+KEEA+ IK+AGKAWYQTMI
Sbjct:  256 RFVVWTKSAFEKLDSIYGSFDKVSEKKNGYVLPRSKMVNADLARIINSDEVQSVVSPIQEGSKRAPLKKNPLRILNTMLKLNPYAKTARRMSLLAEAERVKAKKEKLDKKRKPISKEEASTIKAAGKAWYQTMI 389          

HSP 2 Score: 38.5058 bits (88), Expect = 1.350e-44
Identity = 16/19 (84.21%), Postives = 17/19 (89.47%), Query Frame = -1
Query:  281 SDSDYPEFENFWKWLGVSQ 337
            SDSDY EF+NF KWLGVSQ
Sbjct:  390 SDSDYTEFDNFTKWLGVSQ 408          
BLAST of CF834007 vs. ExPASy Swiss-Prot
Match: RL4A_ARATH (60S ribosomal protein L4-1 OS=Arabidopsis thaliana GN=RPL4A PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 5.497e-43
Identity = 84/134 (62.69%), Postives = 98/134 (73.13%), Query Frame = -3
Query:  339 RFIVWSKSAFEKLDEIYGKFDKGSEKKKDYVLPRSKMVNADLARIINSDEVQSVVSPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRVXXXXXXXXXXXKPITKEEAAAIKSAGKAWYQTMI 740
            RF++W+KSAFEKL+ IYG F+K SEKKK YVLPR+KMVNADLARIINSDE+QSVV+PIK + KRA                 PYAKTA+RMSLLAEAQRV           K +TKEEA AIK+AGK+WY+TMI
Sbjct:  254 RFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEIQSVVNPIKKDAKRAVLKKNPLKNLNVMLKLNPYAKTAKRMSLLAEAQRVKAKKEKLAKKRKTVTKEEALAIKAAGKSWYKTMI 387          

HSP 2 Score: 36.965 bits (84), Expect = 5.497e-43
Identity = 15/19 (78.95%), Postives = 16/19 (84.21%), Query Frame = -1
Query:  281 SDSDYPEFENFWKWLGVSQ 337
            SDSDY EF+NF KWLG SQ
Sbjct:  388 SDSDYTEFDNFTKWLGASQ 406          
BLAST of CF834007 vs. ExPASy Swiss-Prot
Match: RL4B_ARATH (60S ribosomal protein L4-2 OS=Arabidopsis thaliana GN=RPL4D PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 1.585e-42
Identity = 86/134 (64.18%), Postives = 96/134 (71.64%), Query Frame = -3
Query:  339 RFIVWSKSAFEKLDEIYGKFDKGSEKKKDYVLPRSKMVNADLARIINSDEVQSVVSPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRVXXXXXXXXXXXKPITKEEAAAIKSAGKAWYQTMI 740
            RF++W+KSAFEKL+ IYG F+K SEKKK YVLPR+KMVNADLARIINSDEVQSVV+PIK   KRA                 PYAKTA+RMSLLAEA RV           K +TKEEA AIK+AGKAWYQTMI
Sbjct:  255 RFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEVQSVVNPIKDGSKRAVLKKNPLKNLNVMFKLNPYAKTAKRMSLLAEASRVKAKKEKLEKKRKVVTKEEAQAIKAAGKAWYQTMI 388          

HSP 2 Score: 36.965 bits (84), Expect = 1.585e-42
Identity = 15/19 (78.95%), Postives = 16/19 (84.21%), Query Frame = -1
Query:  281 SDSDYPEFENFWKWLGVSQ 337
            SDSDY EF+NF KWLG SQ
Sbjct:  389 SDSDYTEFDNFTKWLGASQ 407          
BLAST of CF834007 vs. ExPASy Swiss-Prot
Match: RL4_DICDI (60S ribosomal protein L4 OS=Dictyostelium discoideum GN=rpl4 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.242e-14
Identity = 35/64 (54.69%), Postives = 46/64 (71.88%), Query Frame = -3
Query:  549 RFIVWSKSAFEKLDEIYGKFDKGSEKKKDYVLPRSKMVNADLARIINSDEVQSVVSPIKTEVKR 740
            RFI+W+KSAFE+LD  +G F K S +KK Y LPR  + NAD+ R++NSDE+Q+ V   K  VKR
Sbjct:  247 RFIIWTKSAFEQLDSTFGTFAKSSAQKKGYTLPRPMIANADIVRLVNSDEIQAAVRASKVVVKR 310          
BLAST of CF834007 vs. ExPASy Swiss-Prot
Match: RL4B_XENLA (60S ribosomal protein L4-B (Fragment) OS=Xenopus laevis GN=rpl4-B PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.525e-13
Identity = 39/100 (39.00%), Postives = 56/100 (56.00%), Query Frame = -3
Query:  441 RFIVWSKSAFEKLDEIYGKFDKGSEKKKDYVLPRSKMVNADLARIINSDEVQSVVSPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRV 740
            RF +W++SAF KLD++YG + K ++ K DY LP  KM N DL RI+ S E+Q  +     +VKR                  PYAKTARR ++L + + +
Sbjct:  247 RFCIWTESAFRKLDDLYGTWRKSAKLKADYNLPMHKMTNTDLTRILKSQEIQRALRAPNKKVKRRELKKNPLKNLRIMMRLNPYAKTARRHAILQQLENI 346          
BLAST of CF834007 vs. ExPASy Swiss-Prot
Match: RL4A_XENLA (60S ribosomal protein L4-A OS=Xenopus laevis GN=rpl4-A PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.525e-13
Identity = 39/100 (39.00%), Postives = 56/100 (56.00%), Query Frame = -3
Query:  441 RFIVWSKSAFEKLDEIYGKFDKGSEKKKDYVLPRSKMVNADLARIINSDEVQSVVSPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRV 740
            RF +W++SAF KLD++YG + K ++ K DY LP  KM N DL RI+ S E+Q  +     +VKR                  PYAKTARR ++L + + +
Sbjct:  252 RFCIWTESAFRKLDDLYGTWRKSAKLKADYNLPMHKMTNTDLTRILKSQEIQRALRAPNKKVKRRELKKNPLKNLRIMMRLNPYAKTARRHAILQQLENI 351          
BLAST of CF834007 vs. ExPASy Swiss-Prot
Match: RL4_PONAB (60S ribosomal protein L4 OS=Pongo abelii GN=RPL4 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.291e-12
Identity = 37/98 (37.76%), Postives = 56/98 (57.14%), Query Frame = -3
Query:  447 RFIVWSKSAFEKLDEIYGKFDKGSEKKKDYVLPRSKMVNADLARIINSDEVQSVVSPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQ 740
            RF +W++SAF KLDE+YG + K +  K +Y LP  KM+N DL+RI+ S E+Q  +   + ++ R                  PYAKT RR ++L +A+
Sbjct:  248 RFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345          
BLAST of CF834007 vs. ExPASy Swiss-Prot
Match: RL4_HUMAN (60S ribosomal protein L4 OS=Homo sapiens GN=RPL4 PE=1 SV=5)

HSP 1 Score: 73.559 bits (179), Expect = 1.291e-12
Identity = 37/98 (37.76%), Postives = 56/98 (57.14%), Query Frame = -3
Query:  447 RFIVWSKSAFEKLDEIYGKFDKGSEKKKDYVLPRSKMVNADLARIINSDEVQSVVSPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQ 740
            RF +W++SAF KLDE+YG + K +  K +Y LP  KM+N DL+RI+ S E+Q  +   + ++ R                  PYAKT RR ++L +A+
Sbjct:  248 RFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345          
BLAST of CF834007 vs. ExPASy Swiss-Prot
Match: RL4_RAT (60S ribosomal protein L4 OS=Rattus norvegicus GN=Rpl4 PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.686e-12
Identity = 44/128 (34.38%), Postives = 65/128 (50.78%), Query Frame = -3
Query:  357 RFIVWSKSAFEKLDEIYGKFDKGSEKKKDYVLPRSKMVNADLARIINSDEVQSVVSPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQRVXXXXXXXXXXXKPITKEEAAAIKSAGKA 740
            RF +W++SAF KLDE+YG + K +  K +Y LP  KM+N DL+RI+ S E+Q  +   + ++ R                  PYAKT RR ++L +A+               + K EAAA   A K+
Sbjct:  248 RFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMMNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARN----------HKLRVKKLEAAAAALAAKS 365          
BLAST of CF834007 vs. ExPASy Swiss-Prot
Match: RL4_MOUSE (60S ribosomal protein L4 OS=Mus musculus GN=Rpl4 PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.202e-12
Identity = 37/98 (37.76%), Postives = 56/98 (57.14%), Query Frame = -3
Query:  447 RFIVWSKSAFEKLDEIYGKFDKGSEKKKDYVLPRSKMVNADLARIINSDEVQSVVSPIKTEVKRAXXXXXXXXXXXXXXXXXPYAKTARRMSLLAEAQ 740
            RF +W++SAF KLDE+YG + K +  K +Y LP  KM+N DL+RI+ S E+Q  +   + ++ R                  PYAKT RR ++L +A+
Sbjct:  248 RFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMMNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345          
The following BLAST results are available for this feature:
BLAST of CF834007 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
RL4_PRUAR1.350e-4467.1660S ribosomal protein L4 OS=Prunus armeniaca GN=RP... [more]
RL4A_ARATH5.497e-4362.6960S ribosomal protein L4-1 OS=Arabidopsis thaliana... [more]
RL4B_ARATH1.585e-4264.1860S ribosomal protein L4-2 OS=Arabidopsis thaliana... [more]
RL4_DICDI5.242e-1454.6960S ribosomal protein L4 OS=Dictyostelium discoide... [more]
RL4B_XENLA1.525e-1339.0060S ribosomal protein L4-B (Fragment) OS=Xenopus l... [more]
RL4A_XENLA1.525e-1339.0060S ribosomal protein L4-A OS=Xenopus laevis GN=rp... [more]
RL4_PONAB1.291e-1237.7660S ribosomal protein L4 OS=Pongo abelii GN=RPL4 P... [more]
RL4_HUMAN1.291e-1237.7660S ribosomal protein L4 OS=Homo sapiens GN=RPL4 P... [more]
RL4_RAT1.686e-1234.3860S ribosomal protein L4 OS=Rattus norvegicus GN=R... [more]
RL4_MOUSE2.202e-1237.7660S ribosomal protein L4 OS=Mus musculus GN=Rpl4 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04L17_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04L17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834007 ID=CF834007; Name=CF834007; organism=Citrus sinensis; type=EST; length=742bp
TTTTTTTTAAATTTATAAGTATAAATAGTACCATTAAGACCATAAATCCA
CCTCCTAAAACATATAACTCCAATTCTAACTTCAAAGAAAGTTCTTTCAC
CTTGCCCATAAAGACAAAAACGCTGGGAGGAAAAACATTGACCATTCAGC
TTATCTTCCTTCCAAACATTCTCATCCATGACTCAAAACAGCAAAAGATA
CTAAAATTCAACAGCAAATCCACAAAGATTAACAAGATATTGTCTCAAAA
ATCAAAATTTAAAAACCAACAATCAGATTACTGAGAAACACCAAGCCACT
TCCAGAAGTTCTCGAACTCGGGATAATCACTGTCTGAGGATCATAGTCTG
GTACCATGCCTTGCCGGCAGACTTGATTGCAGCTGCCTCCTCCTTAGTGA
TGGGCTTCCTCTTCTTGGCGAGCTTCTCCTTCTTAACTTTAACCCGTTGT
GCCTCAGCCAAAAGTGACATCCGCCGAGCAGTCTTAGCATATGGGTTCAA
CCTCAACAGAGTATTCAAGTTCTTGAGAGGATTCTTCTTCATCGGAGCCC
TCTTAACCTCCGTCTTAATCGGGCTGACAACAGACTGCACCTCATCCGAG
TTAATAATCCTAGCCAAGTCAGCGTTGACCATCTTGGAACGAGGCAGCAC
ATAATCCTTCTTCTTCTCGGAACCCTTATCAAACTTACCATAAATCTCAT
CAAGCTTCTCAAAAGCCGATTTACTCCAAACAATAAACCGCC
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