CF834028

Overview
NameCF834028
Unique NameCF834028
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6351 contig Csv1_Contig6351:113..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834028 vs. ExPASy Swiss-Prot
Match: SMT3_ARATH (Ubiquitin-like protein SMT3 OS=Arabidopsis thaliana GN=SMT3 PE=1 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 6.474e-41
Identity = 80/89 (89.89%), Postives = 84/89 (94.38%), Query Frame = 3
Query:   51 QEEDKKPNDQSAHINLQDKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 317
            QEEDKKP D  AHINL+ KGQDGNEVFFRIKRSTQLKKLMNAYCDRQSV++NSIAFLFDGRRLR EQTPDEL+MEDGDEIDAMLHQTGG
Sbjct:    5 QEEDKKPGDGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNSIAFLFDGRRLRAEQTPDELDMEDGDEIDAMLHQTGG 93          
BLAST of CF834028 vs. ExPASy Swiss-Prot
Match: SMT3_ORYSJ (Ubiquitin-like protein SMT3 OS=Oryza sativa subsp. japonica GN=SMT3 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 6.059e-39
Identity = 80/93 (86.02%), Postives = 84/93 (90.32%), Query Frame = 3
Query:   54 EEDKKP---NDQSAHINLQDKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGML 323
            EEDKKP       AHINL+ KGQDGNEVFFRIKRSTQLKKLMNAYCDRQSV++N+IAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG L
Sbjct:    6 EEDKKPAGGEGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNAIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGCL 98          
BLAST of CF834028 vs. ExPASy Swiss-Prot
Match: PMT3_SCHPO (Ubiquitin-like protein pmt3/smt3 OS=Schizosaccharomyces pombe GN=pmt3 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 3.569e-23
Identity = 51/105 (48.57%), Postives = 72/105 (68.57%), Query Frame = 3
Query:    3 VRDEAEDLMSGVTNTPQEEDKKPNDQSAHINLQDKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 317
            + D  +  ++  T    ++D KP+ +  HINL+  GQD NEVFF+IK++T+  KLM  YC RQ   +NS+ FL DG R+R +QTP EL+MEDGD+I+A+L Q GG
Sbjct:    9 ISDADKSAITPTTGDTSQQDVKPSTE--HINLKVVGQDNNEVFFKIKKTTEFSKLMKIYCARQGKSMNSLRFLVDGERIRPDQTPAELDMEDGDQIEAVLEQLGG 111          
BLAST of CF834028 vs. ExPASy Swiss-Prot
Match: SUMO3_XENTR (Small ubiquitin-related modifier 3 OS=Xenopus tropicalis GN=sumo3 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.026e-18
Identity = 48/91 (52.75%), Postives = 58/91 (63.74%), Query Frame = 3
Query:   48 PQEEDKKPNDQSAHINLQDKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGM 320
            P+E  K  ND   HINL+  GQDG+ V F+IKR T L KLM AYCDRQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:    6 PKEGVKTEND---HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCDRQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 93          
BLAST of CF834028 vs. ExPASy Swiss-Prot
Match: SUMO3_XENLA (Small ubiquitin-related modifier 3 OS=Xenopus laevis GN=sumo3 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.026e-18
Identity = 48/91 (52.75%), Postives = 58/91 (63.74%), Query Frame = 3
Query:   48 PQEEDKKPNDQSAHINLQDKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGM 320
            P+E  K  ND   HINL+  GQDG+ V F+IKR T L KLM AYCDRQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:    6 PKEGVKTEND---HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCDRQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 93          
BLAST of CF834028 vs. ExPASy Swiss-Prot
Match: SUMO3_CHICK (Small ubiquitin-related modifier 3 OS=Gallus gallus GN=SUMO3 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.515e-18
Identity = 47/91 (51.65%), Postives = 58/91 (63.74%), Query Frame = 3
Query:   48 PQEEDKKPNDQSAHINLQDKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGM 320
            P+E  K  ND   HINL+  GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:    6 PKEGVKTEND---HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINEADTPAQLEMEDEDTIDVFQQQTGGL 93          
BLAST of CF834028 vs. ExPASy Swiss-Prot
Match: SUMO3_HUMAN (Small ubiquitin-related modifier 3 OS=Homo sapiens GN=SUMO3 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 5.896e-18
Identity = 47/91 (51.65%), Postives = 58/91 (63.74%), Query Frame = 3
Query:   48 PQEEDKKPNDQSAHINLQDKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGM 320
            P+E  K  ND   HINL+  GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:    6 PKEGVKTEND---HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 93          
BLAST of CF834028 vs. ExPASy Swiss-Prot
Match: SUMO3_RAT (Small ubiquitin-related modifier 3 OS=Rattus norvegicus GN=Sumo3 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.701e-18
Identity = 47/90 (52.22%), Postives = 57/90 (63.33%), Query Frame = 3
Query:   48 PQEEDKKPNDQSAHINLQDKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 317
            P+E  K  ND   HINL+  GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:    6 PKEGVKTEND---HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92          
BLAST of CF834028 vs. ExPASy Swiss-Prot
Match: SUMO3_MOUSE (Small ubiquitin-related modifier 3 OS=Mus musculus GN=Sumo3 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.701e-18
Identity = 47/90 (52.22%), Postives = 57/90 (63.33%), Query Frame = 3
Query:   48 PQEEDKKPNDQSAHINLQDKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 317
            P+E  K  ND   HINL+  GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:    6 PKEGVKTEND---HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92          
BLAST of CF834028 vs. ExPASy Swiss-Prot
Match: SUMO3_DANRE (Small ubiquitin-related modifier 3 OS=Danio rerio GN=sumo3 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.701e-18
Identity = 47/90 (52.22%), Postives = 57/90 (63.33%), Query Frame = 3
Query:   48 PQEEDKKPNDQSAHINLQDKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 317
            P+E  K  ND   HINL+  GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:    6 PREGVKTEND---HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSIRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92          
The following BLAST results are available for this feature:
BLAST of CF834028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
SMT3_ARATH6.474e-4189.89Ubiquitin-like protein SMT3 OS=Arabidopsis thalian... [more]
SMT3_ORYSJ6.059e-3986.02Ubiquitin-like protein SMT3 OS=Oryza sativa subsp.... [more]
PMT3_SCHPO3.569e-2348.57Ubiquitin-like protein pmt3/smt3 OS=Schizosaccharo... [more]
SUMO3_XENTR2.026e-1852.75Small ubiquitin-related modifier 3 OS=Xenopus trop... [more]
SUMO3_XENLA2.026e-1852.75Small ubiquitin-related modifier 3 OS=Xenopus laev... [more]
SUMO3_CHICK4.515e-1851.65Small ubiquitin-related modifier 3 OS=Gallus gallu... [more]
SUMO3_HUMAN5.896e-1851.65Small ubiquitin-related modifier 3 OS=Homo sapiens... [more]
SUMO3_RAT7.701e-1852.22Small ubiquitin-related modifier 3 OS=Rattus norve... [more]
SUMO3_MOUSE7.701e-1852.22Small ubiquitin-related modifier 3 OS=Mus musculus... [more]
SUMO3_DANRE7.701e-1852.22Small ubiquitin-related modifier 3 OS=Danio rerio ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04M10_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04M10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834028 ID=CF834028; Name=CF834028; organism=Citrus sinensis; type=EST; length=557bp
GTGTGAGAGACGAAGCAGAAGACCTAATGTCAGGCGTCACGAACACTCCT
CAAGAGGAAGATAAGAAGCCCAACGATCAATCGGCTCACATCAATCTCCA
AGACAAGGGCCAGGATGGGAATGAGGTTTTCTTCAGGATCAAACGAAGCA
CCCAACTAAAGAAGCTTATGAATGCATACTGTGATAGACAATCTGTGGAG
CTGAACTCAATTGCCTTCTTGTTTGATGGTCGCCGTCTTCGAGGAGAGCA
AACCCCTGATGAGCTGGAAATGGAAGATGGTGATGAGATTGATGCCATGC
TGCACCAAACCGGAGGAATGCTGATGTTCTAATTATGTAATACTCGTTTG
AGAGCTTATTAGTAGTATTAATGTAAAACTATTAATGGATGGATGTAAGT
TATGCAGAGGCTCAAGATTGTGTATTTGTGATCTACACCATTATGTTTGT
GTTACCTAAGTATGTAGCTCTTTCTTCCAGAGCCCTGATCGTTGCTGTTT
ATATAGAGCTAGAATTTAAATATATCTGTGATGATTGGATCAAAAAAAAA
AAAAAAA
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