CF834048

Overview
NameCF834048
Unique NameCF834048
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length779
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF834048 vs. ExPASy Swiss-Prot
Match: UAF30_YEAST (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae GN=UAF30 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.222e-13
Identity = 37/88 (42.05%), Postives = 58/88 (65.91%), Query Frame = -2 
Query:  329 KRGAPTRPTGISKVSPVSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHFVK 592
            K+G  ++    ++   +S +LA  LG  E +R++ VR++WA++K HNLQNP NK+EILCDEKL+ I  GK +    E+ K+L+ H  +
Sbjct:  110 KKGTVSKSPISTRKVTLSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLELIL-GK-STNMFEMHKILASHMTE 195
[Close]
BLAST of CF834048 vs. ExPASy Swiss-Prot
Match: UAF30_SCHPO (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe GN=spp27 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.645e-11
Identity = 30/68 (44.12%), Postives = 46/68 (67.65%), Query Frame = -2 
Query:  389 KRGAPTRPTGISKVSPVSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFE 592
            KR        ++K   +SP LA+FLG  + SR   V+++W ++K H+LQ+P +KR ILCD+KLK++FE
Sbjct:  107 KRNQDPANNPLNKPMKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSVFE 174
[Close]
BLAST of CF834048 vs. ExPASy Swiss-Prot
Match: TRI1_YEAST (Protein TRI1 OS=Saccharomyces cerevisiae GN=TRI1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.512e-11
Identity = 34/69 (49.28%), Postives = 48/69 (69.57%), Query Frame = -2 
Query:  338 VSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPH 544
            +S  L KFLG+ E  R+  V+ IW ++K H+LQNP+++REILCDEK++ IF GK    F  + KLL+ H
Sbjct:  126 LSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIF-GKKMTMF-SMNKLLTKH 192
The following BLAST results are available for this feature:
BLAST of CF834048 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
UAF30_YEAST8.222e-1342.05Upstream activation factor subunit UAF30 OS=Saccha... [more]
UAF30_SCHPO2.645e-1144.12Upstream activation factor subunit spp27 OS=Schizo... [more]
TRI1_YEAST4.512e-1149.28Protein TRI1 OS=Saccharomyces cerevisiae GN=TRI1 P... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_04N03_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04N03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834048 ID=CF834048; Name=CF834048; organism=Citrus sinensis; type=EST; length=779bp
TTTTTTTTTTTTTTTTGAAACACACGGCTTAGGCAATTACTAGACAAGCT
ACACCCACAACTACAGAGAATGCAGACAGACATTAGGGAAACCAAGACAG
GGTATGAACTTCTTCCCCTCACTAATTTTTACAGCATGTCCACCTAAACA
ATTTGAAAAGAGTCACAAACTCAACCATGAGACCAACCATGTATCAACAT
AAGAACGCAATTACATCAACAAAAGGTTATGAAAAGTGACAAGAGCTCCC
TCATGGAGTTGGGAGAGCAATTTGAAGCCAAACACCTGTACTTGTTATCA
GAATCAGCAGTCAAGGACCTCAAGCAGTCTTCACGAAATGGGGGCTCAAC
AGTTTCCCAATCTCCAGGAATCCAACAGCATTTTTCCCTTCGAAGATGGC
TTTCAGCTTCTCATCACAGAGGATTTCCCGCTTGTTCTCAGGATTCTGGA
GGTTGTGGGTCTTGACGTGGGCCCAGATCTGACGGACGGCGTCGGAGCGG
GAGGCTTCAGGGGCGCCGAGAAATTTCGCAAGCGCAGGAGAGACAGGGCT
CACCTTGGAAATTCCAGTAGGTCGAGTAGGTGCACCGCGCTTTACTGGCG
ATTTGGCTCTGGGTTTCTTCGTTGTTTTTGATTTCGCTTTAGTGGAAGCC
GCTGAGGAGGCAGCGGCAGAGGACTTGGCCGGAGCCAGGAGGGCCCGGCA
GCCGTTGAAAACCCTAGCGGCAGCTGAAGACATTGCGATCACCAAGTATT
TGTTAGTTTGCTTGAGAGTGAACTGCCGA
back to top