CF834074

Overview
NameCF834074
Unique NameCF834074
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length647
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834074 vs. ExPASy Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.771e-32
Identity = 68/110 (61.82%), Postives = 85/110 (77.27%), Query Frame = -1
Query:  312 EGLQVKKDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGEVYPASSLISEKTPPLFRRVRIEEYFRSRYARELRGKSQLDSLRI 641
            EGLQ+KKDGKW+PV PLP+AFIVNIGD LEIITNGTYRSIEHR VVNS +ERLS+AT ++V    EV PA SL+  +    F+R+ ++EY    ++R L GK+ LD+LRI
Sbjct:  249 EGLQIKKDGKWVPVKPLPNAFIVNIGDVLEIITNGTYRSIEHRGVVNSEKERLSIATFHNVGMYKEVGPAKSLVERQKVARFKRLTMKEYNDGLFSRTLDGKAYLDALRI 358          
BLAST of CF834074 vs. ExPASy Swiss-Prot
Match: NCS1_COPJA (S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.569e-20
Identity = 46/109 (42.20%), Postives = 71/109 (65.14%), Query Frame = -1
Query:  312 GLQVKKDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGEVYPASSLISEKTPPLFRRVRIEEYFRSRYARELRGKSQLDSLRI 638
            GL +KKD KW+P+ P+  AF+VNIGD +EI++NG Y+SIEHRAV+N+ +ERLS+A  +   Y  ++ P   L+ E     ++ +  E+Y       +L GKS LD +++
Sbjct:  245 GLHIKKDEKWVPIKPILGAFVVNIGDVIEIMSNGIYKSIEHRAVINTDKERLSIAAFHDPEYGTKIGPLPDLVKENGVK-YKTIDYEDYLIRSSNIKLDGKSLLDQMKL 352          
BLAST of CF834074 vs. ExPASy Swiss-Prot
Match: ACCO_PRUMU (1-aminocyclopropane-1-carboxylate oxidase OS=Prunus mume GN=ACO1 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.755e-16
Identity = 38/97 (39.18%), Postives = 63/97 (64.95%), Query Frame = -1
Query:  366 KWEGLQVKKDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGEVYPASSLI---SEKTPPLFRRVRIEEYFR 647
            K  GLQ+ KDG+WI V P+  + ++N+GD LE+ITNG YRS+EHR +  +   R+S+A+ Y+   D  +YPA +L+   +E+   ++ +   E+Y +
Sbjct:  191 KVSGLQLLKDGQWIDVPPMRHSIVINLGDQLEVITNGKYRSVEHRVIAQTDGTRMSIASFYNPGSDAVIYPAPTLVEKEAEEKNQVYPKFVFEDYMK 287          
BLAST of CF834074 vs. ExPASy Swiss-Prot
Match: DV4H_CATRO (Deacetoxyvindoline 4-hydroxylase OS=Catharanthus roseus GN=D4H PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 7.516e-16
Identity = 39/118 (33.05%), Postives = 69/118 (58.47%), Query Frame = -1
Query:  306 GLQVKKDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGE------VY-PASSLISEKTPPLFRRVRIEEYFRSRYARELRGKSQLDSLRIQH 638
            GLQ+  + +WI V  +P A ++NI D L++ITN  ++S+EHR + N V  R+SVA  + ++   +      +Y P   LISE+ PP+++ V ++++   R+A+     S L   R+ +
Sbjct:  284 GLQILLENQWIDVPFIPGALVINIADLLQLITNDKFKSVEHRVLANKVGPRISVAVAFGIKTQTQEGVSPRLYGPIKELISEENPPIYKEVTVKDFITIRFAKRFDDSSSLSPFRLNN 401          
BLAST of CF834074 vs. ExPASy Swiss-Prot
Match: IDS3_HORVU (2'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vulgare GN=IDS3 PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 9.817e-16
Identity = 39/91 (42.86%), Postives = 54/91 (59.34%), Query Frame = -1
Query:  366 GLQVKKDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGEVYPASSLISEKTPPLFRRVRIEEYFR 638
            GL+V   G WI V P P+AF+VN G  LE++TNG  +SIEHRA+ NS   R SVAT      +  + PA   +S++ PP +R     ++ R
Sbjct:  225 GLEVSYKGDWIKVDPAPNAFVVNFGQQLEVVTNGLLKSIEHRAMTNSALARTSVATFIMPTQECLIGPAKEFLSKENPPCYRTTMFRDFMR 315          
BLAST of CF834074 vs. ExPASy Swiss-Prot
Match: ACCO1_BRAJU (1-aminocyclopropane-1-carboxylate oxidase OS=Brassica juncea GN=ACO PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.872e-15
Identity = 38/80 (47.50%), Postives = 53/80 (66.25%), Query Frame = -1
Query:  408 KWEGLQVKKDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGEVYPASSLISEKT 647
            K  GLQ+ KDG WI V PL  + ++N+GD LE+ITNG Y+S+ HR V      R+S+A+ Y+   D E+ PASSL  ++T
Sbjct:  194 KVTGLQLLKDGDWIDVPPLNHSIVINLGDQLEVITNGRYKSMMHRVVTQKEGNRMSIASFYNPGSDAEISPASSLACKET 273          
BLAST of CF834074 vs. ExPASy Swiss-Prot
Match: ACCO3_CUCME (1-aminocyclopropane-1-carboxylate oxidase 3 OS=Cucumis melo GN=ACO3 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.310e-15
Identity = 38/97 (39.18%), Postives = 60/97 (61.86%), Query Frame = -1
Query:  366 KWEGLQVKKDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGEVYPASSLI---SEKTPPLFRRVRIEEYFR 647
            K  GL V KDGKW+ V P+  + ++N+GD LE+ITNG Y+S+ HR +      R+S+A+ Y+   D  +YPA +L+    EKT  L+ +   ++Y +
Sbjct:  192 KVSGLHVLKDGKWVDVPPMHHSIVINLGDQLEVITNGKYKSVMHRVIAQEDGNRMSIASFYNPGNDAVIYPAPALVEGEQEKT-KLYPKFVFDDYMK 287          
BLAST of CF834074 vs. ExPASy Swiss-Prot
Match: ACCO_DIACA (Probable 1-aminocyclopropane-1-carboxylate oxidase OS=Dianthus caryophyllus GN=ACO PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.851e-14
Identity = 33/79 (41.77%), Postives = 53/79 (67.09%), Query Frame = -1
Query:  411 KWEGLQVKKDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGEVYPASSLISEK 647
            K  GLQ+ KDG W+ V P+  + +VN+GD LE+ITNG Y+S+ HR +  +   R+S+A+ Y+   D  +YPA +L+ ++
Sbjct:  197 KVSGLQLLKDGHWVDVPPMKHSIVVNLGDQLEVITNGKYKSVMHRVIAQTDGNRMSIASFYNPGSDAVIYPAPTLVEKE 275          
BLAST of CF834074 vs. ExPASy Swiss-Prot
Match: ACCO_ACTDE (1-aminocyclopropane-1-carboxylate oxidase OS=Actinidia deliciosa GN=ACO PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.851e-14
Identity = 34/79 (43.04%), Postives = 53/79 (67.09%), Query Frame = -1
Query:  411 KWEGLQVKKDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGEVYPASSLISEK 647
            K  GLQ+ KDG+WI V P+  + ++NIGD LE+ITNG Y+S+ HR +      R+S+A+ Y+   D  +YPA +L+ ++
Sbjct:  191 KVSGLQLLKDGEWIDVPPMKHSIVINIGDQLEVITNGKYKSVMHRVIAQPDGNRMSIASFYNPGSDAVMYPAPALVDKE 269          
BLAST of CF834074 vs. ExPASy Swiss-Prot
Match: ACCO2_MALDO (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Malus domestica GN=ACO2 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.851e-14
Identity = 36/96 (37.50%), Postives = 61/96 (63.54%), Query Frame = -1
Query:  366 KWEGLQVKKDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGEVYPASSLISEKT--PPLFRRVRIEEYFR 647
            K  GLQ+ KDG+W+ V P+  + ++N+GD +E+ITNG Y+SI HR +  S   R+S+A+ Y+   D  + PA +L+ EK+   P + +   ++Y +
Sbjct:  191 KVSGLQLLKDGEWMDVPPVHHSIVINLGDQIEVITNGKYKSIMHRVIAQSDGTRMSIASFYNPGDDAFISPAPALLEEKSEVSPTYPKFLFDDYMK 286          
The following BLAST results are available for this feature:
BLAST of CF834074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
SRG1_ARATH9.771e-3261.82Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 ... [more]
NCS1_COPJA6.569e-2042.20S-norcoclaurine synthase 1 OS=Coptis japonica GN=N... [more]
ACCO_PRUMU5.755e-1639.181-aminocyclopropane-1-carboxylate oxidase OS=Prunu... [more]
DV4H_CATRO7.516e-1633.05Deacetoxyvindoline 4-hydroxylase OS=Catharanthus r... [more]
IDS3_HORVU9.817e-1642.862'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vu... [more]
ACCO1_BRAJU4.872e-1547.501-aminocyclopropane-1-carboxylate oxidase OS=Brass... [more]
ACCO3_CUCME8.310e-1539.181-aminocyclopropane-1-carboxylate oxidase 3 OS=Cuc... [more]
ACCO_DIACA1.851e-1441.77Probable 1-aminocyclopropane-1-carboxylate oxidase... [more]
ACCO_ACTDE1.851e-1443.041-aminocyclopropane-1-carboxylate oxidase OS=Actin... [more]
ACCO2_MALDO1.851e-1437.501-aminocyclopropane-1-carboxylate oxidase 2 OS=Mal... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04N20_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04N20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834074 ID=CF834074; Name=CF834074; organism=Citrus sinensis; type=EST; length=647bp
TTTTTTTTTTTTTTTTTGCAAAATTCTATTTCAAAAAAGAAAGATACTGA
TCTGATATAAGCACCACCATATATCATCGGAAGATTCCAGGCATAAGTCT
GCAATTCTTAAGATTCTTACATGTTCTATTCAGTATCTCAAATGATAGAG
CTACACAACGATCCCAGCATGGCAGGTTATACCACAGTATTCATAGAACT
TATTTCTTATTTTCAGTTCCACACACAATCTCAATAGCAAGGTCCTTCAG
AGTTTTTGTACCAAACTCTTTAGTTATCCGAAATAAACTTATACTAGCCT
TGACCATGTTGAATTCTCAGGGAATCCAGCTGAGATTTTCCCCTAAGCTC
ACGAGCATACCGGCTCCTAAAGTATTCTTCAATTCTCACTCTTCTAAACA
AAGGAGGAGTTTTTTCAGAGATCAAACTGGAGGCAGGATATACTTCACCA
TCATATCTCACTGAGTAAACTGTGGCAACGGAAAGTCTTTCCTGTACAGA
GTTTACAACTGCACGATGCTCAATGCTGCGGTATGTCCCATTGGTTATAA
TCTCCAATGTGTCTCCAATGTTGACAATGAAAGCATCCGGGAGTGGGGTA
ACAGGAATCCACTTTCCATCCTTCTTTACCTGGAGACCCTCCCACTT
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