CF834078

Overview
NameCF834078
Unique NameCF834078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834078 vs. ExPASy Swiss-Prot
Match: EIF3I_ARATH (Eukaryotic translation initiation factor 3 subunit I OS=Arabidopsis thaliana GN=TIF3I1 PE=2 SV=2)

HSP 1 Score: 259.996 bits (663), Expect = 7.281e-69
Identity = 127/150 (84.67%), Postives = 133/150 (88.67%), Query Frame = -2
Query:  181 TGKLLKDSDKETGHKKIITLLAKAADGSHFLTGSLDKYGKLWDARTLELIKTYVTERPVNAVNMSPLLDHVVLGGGQDASAVTTTDHRAGKLEDKFFDKIFQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFNIKI 630
            TGKLLK SD+E GHKK IT L KAAD SHFLTGSLDK  KLWD RTL L+KTY T  PVNAV++SPLL+HVVLGGGQDASAVTTTDHRAGK E KF+DKI QEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFD DYFNIKI
Sbjct:  179 TGKLLKQSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAKLWDMRTLTLLKTYTTVVPVNAVSLSPLLNHVVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDSDYFNIKI 328          
BLAST of CF834078 vs. ExPASy Swiss-Prot
Match: EIF3I_BOMMO (Eukaryotic translation initiation factor 3 subunit I OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 8.963e-43
Identity = 87/147 (59.18%), Postives = 110/147 (74.83%), Query Frame = -2
Query:  190 TGKLLKDSDKETGHKKIITLLAKAADGSHFLTGSLDKYGKLWDARTLELIKTYVTERPVNAVNMSPLLDHVVLGGGQDASAVTTTDHRAGKLEDKFFDKIFQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFN 630
            TGK +  S KE  H+  IT +  + DG+ F+T S D   KL+D  +LEL+K Y TERPVN+  +SP+LDHVVLGGGQDA  VTTT  R GK + +FF  +F+EE G VKGHFGPIN+LAF+PDGKS++SGGEDGYVR+H+FD  YF+
Sbjct:  178 TGKKIH-SVKEHTHQ--ITDMQLSRDGTMFVTASKDHTAKLFDTNSLELLKEYKTERPVNSAALSPILDHVVLGGGQDAMEVTTTSTRQGKFDARFFHLVFEEEFGRVKGHFGPINSLAFHPDGKSYASGGEDGYVRVHNFDQSYFD 321          
BLAST of CF834078 vs. ExPASy Swiss-Prot
Match: EIF3I_DANRE (Eukaryotic translation initiation factor 3 subunit I OS=Danio rerio GN=eif3i PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.096e-40
Identity = 79/150 (52.67%), Postives = 109/150 (72.67%), Query Frame = -2
Query:  181 TGKLLKDSDKETGHKKIITLLAKAADGSHFLTGSLDKYGKLWDARTLELIKTYVTERPVNAVNMSPLLDHVVLGGGQDASAVTTTDHRAGKLEDKFFDKIFQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFNIKI 630
            +G++LK   K   H K I  +  + D +  ++ S D   K++D+ TLE +KT+ TERPVN+  +SP++DHVV+GGGQ+A  VTTT  R GK E +FF   ++EE G VKGHFGPIN +AF+PDGKS+SSGGEDGYVR+H+FDP YF+ ++
Sbjct:  177 SGEVLK---KAKEHTKQINDIQSSVDLTMIISASKDCTAKMFDSSTLEHVKTFKTERPVNSAAISPIMDHVVMGGGQEAMEVTTTSTRIGKFEARFFHAAYEEEFGRVKGHFGPINCVAFHPDGKSYSSGGEDGYVRIHYFDPHYFDFEL 323          
BLAST of CF834078 vs. ExPASy Swiss-Prot
Match: EIF3I_TAEGU (Eukaryotic translation initiation factor 3 subunit I OS=Taeniopygia guttata GN=EIF3I PE=2 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.431e-40
Identity = 78/136 (57.35%), Postives = 100/136 (73.53%), Query Frame = -2
Query:  184 HKKIITLLAKAADGSHFLTGSLDKYGKLWDARTLELIKTYVTERPVNAVNMSPLLDHVVLGGGQDASAVTTTDHRAGKLEDKFFDKIFQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFNIK 591
            H K I  +  + D + F+T S D   KL+D  +L+ +KT+ TERPVN+  +SP+ DHVVLGGGQ+A  VTTT  R GK E +FF   F+EE G VKGHFGPIN++AF+PDGKS+SSGGEDGYVR+H+FDP YF  +
Sbjct:  187 HTKQINDIQTSRDMTMFITASKDNTAKLFDCTSLKHLKTFRTERPVNSAALSPIFDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRIHYFDPQYFEFE 322          
BLAST of CF834078 vs. ExPASy Swiss-Prot
Match: EIF3I_XENTR (Eukaryotic translation initiation factor 3 subunit I OS=Xenopus tropicalis GN=eif3i PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.869e-40
Identity = 80/136 (58.82%), Postives = 101/136 (74.26%), Query Frame = -2
Query:  184 HKKIITLLAKAADGSHFLTGSLDKYGKLWDARTLELIKTYVTERPVNAVNMSPLLDHVVLGGGQDASAVTTTDHRAGKLEDKFFDKIFQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFNIK 591
            H K I  +  + D + F+T S D   KL+D+ +LE  KT+ TERPVN+  +SP+ DHVVLGGGQ+A  VTTT  R GK E +FF   F+EE G VKGHFGPIN+LAF+PDGKS+SSGGEDGYVR+H+FDP YF+ +
Sbjct:  187 HSKQINDIQTSRDMTMFVTASKDCTSKLFDSTSLEHQKTFRTERPVNSAAISPIYDHVVLGGGQEAMDVTTTSTRIGKFEARFFHVAFEEEFGRVKGHFGPINSLAFHPDGKSYSSGGEDGYVRIHYFDPQYFDFE 322          
BLAST of CF834078 vs. ExPASy Swiss-Prot
Match: EIF3I_XENLA (Eukaryotic translation initiation factor 3 subunit I OS=Xenopus laevis GN=eif3i PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.869e-40
Identity = 80/136 (58.82%), Postives = 101/136 (74.26%), Query Frame = -2
Query:  184 HKKIITLLAKAADGSHFLTGSLDKYGKLWDARTLELIKTYVTERPVNAVNMSPLLDHVVLGGGQDASAVTTTDHRAGKLEDKFFDKIFQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFNIK 591
            H K I  +  + D + F+T S D   KL+D+ +LE  KT+ TERPVN+  +SP+ DHVVLGGGQ+A  VTTT  R GK E +FF   F+EE G VKGHFGPIN+LAF+PDGKS+SSGGEDGYVR+H+FDP YF+ +
Sbjct:  187 HSKQINDIQTSRDMTMFVTASKDCTSKLFDSTSLEHQKTFRTERPVNSAAVSPIYDHVVLGGGQEAMDVTTTSTRIGKFEARFFHVAFEEEFGRVKGHFGPINSLAFHPDGKSYSSGGEDGYVRIHYFDPQYFDFE 322          
BLAST of CF834078 vs. ExPASy Swiss-Prot
Match: EIF3I_DROWI (Eukaryotic translation initiation factor 3 subunit I OS=Drosophila willistoni GN=Trip1 PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.869e-40
Identity = 78/138 (56.52%), Postives = 101/138 (73.19%), Query Frame = -2
Query:  193 DKETGHKKIITLLAKAADGSHFLTGSLDKYGKLWDARTLELIKTYVTERPVNAVNMSPLLDHVVLGGGQDASAVTTTDHRAGKLEDKFFDKIFQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYF 606
            D  T H  +I  +  + DG+ F+T S D   KL+D+ TL  +KTY TERPVN+  +SP+LDHVVLGGGQDA  VTTT  +AGK + +FF  I++EE   +KGHFGPIN+LAF+PDGKS++SGGEDG+VR+  FD  YF
Sbjct:  180 DSGTDHTGVINDMQLSKDGTMFVTASKDATAKLFDSETLMCLKTYKTERPVNSAAISPILDHVVLGGGQDAMEVTTTSTKAGKFDSRFFHLIYEEEFARLKGHFGPINSLAFHPDGKSYASGGEDGFVRVQSFDSTYF 317          
BLAST of CF834078 vs. ExPASy Swiss-Prot
Match: EIF3I_NEMVE (Eukaryotic translation initiation factor 3 subunit I OS=Nematostella vectensis GN=v1g239264 PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 7.102e-40
Identity = 77/136 (56.62%), Postives = 100/136 (73.53%), Query Frame = -2
Query:  184 HKKIITLLAKAADGSHFLTGSLDKYGKLWDARTLELIKTYVTERPVNAVNMSPLLDHVVLGGGQDASAVTTTDHRAGKLEDKFFDKIFQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFNIK 591
            H K I  +    D + F+T S D   KL+D  +L  +KTY T+RPVN+  +SP+ DHVV+GGGQ+A  VTTT  R GK + +FF  +F+EEIG VKGHFGPIN+LAF+PDG+S+SSGGEDGYVR+H FDP Y +I+
Sbjct:  183 HSKQINDIQMYKDSTMFVTASKDTTAKLFDTDSLRHLKTYKTDRPVNSAALSPIKDHVVVGGGQEAMEVTTTSTRVGKFDARFFHVVFEEEIGRVKGHFGPINSLAFHPDGRSYSSGGEDGYVRIHSFDPSYDDIE 318          
BLAST of CF834078 vs. ExPASy Swiss-Prot
Match: EIF3I_MOUSE (Eukaryotic translation initiation factor 3 subunit I OS=Mus musculus GN=Eif3i PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 7.102e-40
Identity = 79/136 (58.09%), Postives = 99/136 (72.79%), Query Frame = -2
Query:  184 HKKIITLLAKAADGSHFLTGSLDKYGKLWDARTLELIKTYVTERPVNAVNMSPLLDHVVLGGGQDASAVTTTDHRAGKLEDKFFDKIFQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFNIK 591
            H + I  +  + D + F+T S D   KL+D+ TLE  KT+ TERPVN+  +SP  DHVVLGGGQ+A  VTTT  R GK E +FF   F+EE G VKGHFGPIN++AF+PDGKS+SSGGEDGYVR+H+FDP YF  +
Sbjct:  187 HSRQINDIQLSRDMTMFVTASKDNTAKLFDSTTLEHQKTFRTERPVNSAALSPNYDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRIHYFDPQYFEFE 322          
BLAST of CF834078 vs. ExPASy Swiss-Prot
Match: EIF3I_HUMAN (Eukaryotic translation initiation factor 3 subunit I OS=Homo sapiens GN=EIF3I PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 7.102e-40
Identity = 79/136 (58.09%), Postives = 99/136 (72.79%), Query Frame = -2
Query:  184 HKKIITLLAKAADGSHFLTGSLDKYGKLWDARTLELIKTYVTERPVNAVNMSPLLDHVVLGGGQDASAVTTTDHRAGKLEDKFFDKIFQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFNIK 591
            H + I  +  + D + F+T S D   KL+D+ TLE  KT+ TERPVN+  +SP  DHVVLGGGQ+A  VTTT  R GK E +FF   F+EE G VKGHFGPIN++AF+PDGKS+SSGGEDGYVR+H+FDP YF  +
Sbjct:  187 HSRQINDIQLSRDMTMFVTASKDNTAKLFDSTTLEHQKTFRTERPVNSAALSPNYDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRIHYFDPQYFEFE 322          
The following BLAST results are available for this feature:
BLAST of CF834078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
EIF3I_ARATH7.281e-6984.67Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_BOMMO8.963e-4359.18Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_DANRE1.096e-4052.67Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_TAEGU1.431e-4057.35Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_XENTR1.869e-4058.82Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_XENLA1.869e-4058.82Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_DROWI1.869e-4056.52Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_NEMVE7.102e-4056.62Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_MOUSE7.102e-4058.09Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_HUMAN7.102e-4058.09Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04N24_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04N24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834078 ID=CF834078; Name=CF834078; organism=Citrus sinensis; type=EST; length=631bp
TTTTTTTTTTTTTTTTTGACACGAAAATGAAACCCTTGATATTGCACCTA
CAATGCGAATTCCTAAAACATACAAANACTGAAGTCGAGAAGAGGCTTTA
TTTATATGGATAAAAATTGACGTCCACAAATCCGCCAAAATTTAAAAAAA
AAAAAAATTTCTGCAAATCCGCCAAAATTATATCTTGATGTTGAAGTAAT
CCGGGTCAAAATGGTGTAACCTCACATAACCATCTTCACCTCCACTTGAG
AAACTTTTACCATCAGGGTTGAAAGCCAAGGCATTTATAGGTCCAAAGTG
TCCTTTAACACCTCCAATTTCTTCTTGGAAAATCTTGTCAAAGAATTTAT
CTTCCAACTTCCCTGCACGATGATCAGTTGTCGTGACAGCTGAAGCATCT
TGACCACCTCCAAGGACCACATGATCAAGAAGTGGAGACATATTAACAGC
ATTGACTGGGCGCTCCGTCACATAGGTCTTGATAAGCTCCAGTGTTCTGG
CATCCCAAAGCTTACCATATTTATCAAGGGAACCAGTGAGGAAATGTGAT
CCATCAGCAGCTTTTGCAAGCAATGTTATAATCTTTTTATGACCAGTTTC
CTTGTCCGAATCTTTAAGCAGTTTCCCTGTC
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