CF834085

Overview
NameCF834085
Unique NameCF834085
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length799
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 343.199 bits (879), Expect = 9.951e-94
Identity = 175/201 (87.06%), Postives = 180/201 (89.55%), Query Frame = 2
Query:  197 MASRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHXXXXXXXXXXXXXXXXXXPGQGTTIN 799
            MA RVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV RWLRELRDHADSNIVIMMAGNKSDLNHLRAV+E+DG +L+EKEGLSFLETSALEATN+EKAFQTILTEIYH                  PGQGTTIN
Sbjct:    1 MAHRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSEDDGGALSEKEGLSFLETSALEATNIEKAFQTILTEIYHIVSKKALAAQEATAGASVPGQGTTIN 201          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 338.576 bits (867), Expect = 2.451e-92
Identity = 175/201 (87.06%), Postives = 179/201 (89.05%), Query Frame = 2
Query:  197 MASRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHXXXXXXXXXXXXXXXXXXPGQGTTIN 799
            MA+RVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV RWLRELRDHADSNIVIMMAGNKSDL HLRAV+EEDG +LAEKEGLSFLETSALEA N+EKAFQTILTEIYH                  PGQGTTIN
Sbjct:    1 MANRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLKHLRAVSEEDGQALAEKEGLSFLETSALEAVNIEKAFQTILTEIYH--IISKKALAAQEASSNLPGQGTTIN 199          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RAA2C_ARATH (Ras-related protein RABA2c OS=Arabidopsis thaliana GN=RABA2C PE=2 SV=4)

HSP 1 Score: 334.339 bits (856), Expect = 4.622e-91
Identity = 174/202 (86.14%), Postives = 176/202 (87.13%), Query Frame = 2
Query:  197 MASRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH-XXXXXXXXXXXXXXXXXXPGQGTTIN 799
            M  RVD EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRT QVEGKT+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLR+V EEDG SLAEKEGLSFLETSALEATNVEKAFQTIL EIYH                   PGQGTTIN
Sbjct:    1 MTHRVDQEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTTQVEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQSLAEKEGLSFLETSALEATNVEKAFQTILGEIYHIISKKALAAQEAAAANSAIPGQGTTIN 202          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RB11A_TOBAC (Ras-related protein Rab11A OS=Nicotiana tabacum GN=RAB11A PE=2 SV=1)

HSP 1 Score: 325.865 bits (834), Expect = 1.644e-88
Identity = 165/201 (82.09%), Postives = 175/201 (87.06%), Query Frame = 2
Query:  197 MASRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHXXXXXXXXXXXXXXXXXXPGQGTTIN 799
            MA+RVDHEYDYLFK+VLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL YDITKRQTFDNV RWLRELRDH DSNIVI++AGNKSDL HLRAV+E+D  +L +KEGLSFLETSALEA NV+KAFQTILT+IYH                  PGQGTTIN
Sbjct:    1 MANRVDHEYDYLFKMVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLFYDITKRQTFDNVQRWLRELRDHRDSNIVIILAGNKSDLKHLRAVSEQDDQALVKKEGLSFLETSALEALNVDKAFQTILTDIYHIISKKALAAQEAAASTALPGQGTTIN 201          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RAA2A_ARATH (Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 1.648e-80
Identity = 148/174 (85.06%), Postives = 160/174 (91.95%), Query Frame = 2
Query:  197 MASRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 718
            MA R D EYDYLFK+VLIGDSGVGKSN+LSRFTRNEFCLESKSTIGVEFATRTLQVEG+TVKAQIWDTAGQERYRAITSAYYRGA+GALLVYD+TK  TF+NV RWL+ELRDHADSNIVIM+ GNK+DL HLRAV  ED  S AEKEGLSF+ETSALEA NVEKAFQTIL+E+Y
Sbjct:    1 MARRPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEVY 174          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RGP2_ORYSJ (Ras-related protein RGP2 OS=Oryza sativa subsp. japonica GN=RGP2 PE=2 SV=2)

HSP 1 Score: 298.13 bits (762), Expect = 3.671e-80
Identity = 147/174 (84.48%), Postives = 163/174 (93.68%), Query Frame = 2
Query:  197 MASRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 718
            M  RVDHEY YLFK+VLIGDSGVGKSNILSRFTRN F L+SKSTIGVEFAT++LQ+EGKT+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQ+FDNV RWLRELRDHADS+IVIMM GNKSDL HLRAV+E++G +LAEKEGL FLETSA+EA NVE+AFQTI+TE+Y
Sbjct:    1 MGGRVDHEYSYLFKMVLIGDSGVGKSNILSRFTRNHFSLDSKSTIGVEFATKSLQMEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQSFDNVHRWLRELRDHADSSIVIMMVGNKSDLIHLRAVSEDEGKALAEKEGLFFLETSAMEAVNVEEAFQTIITEVY 174          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 1.885e-76
Identity = 141/175 (80.57%), Postives = 157/175 (89.71%), Query Frame = 2
Query:  197 MASRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 721
            M+ + D +YDYLFK+VLIGDSGVGKSN+LSRFTRNEF LESKSTIGVEFATR++QV+GKT+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITK  TF+NV RWL+ELRDHADSNIVIM+ GNKSDL HLR V  E   +  E+EGLSF+ETSALE+TNVEKAFQ ILTEIYH
Sbjct:    1 MSHKPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKSVTFENVERWLKELRDHADSNIVIMLVGNKSDLKHLRDVQTEVAQAFCEREGLSFIETSALESTNVEKAFQQILTEIYH 175          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RB11A_RAT (Ras-related protein Rab-11A OS=Rattus norvegicus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 281.182 bits (718), Expect = 4.644e-75
Identity = 138/169 (81.66%), Postives = 154/169 (91.12%), Query Frame = 2
Query:  212 DHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 718
            D EYDYLFK+VLIGDSGVGKSN+LSRFTRNEF LESKSTIGVEFATR++QV+GKT+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDI K  T++NV RWL+ELRDHADSNIVIM+ GNKSDL HLRAV  ++  + AEK GLSF+ETSAL++TNVE AFQTILTEIY
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RB11A_RABIT (Ras-related protein Rab-11A OS=Oryctolagus cuniculus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 281.182 bits (718), Expect = 4.644e-75
Identity = 138/169 (81.66%), Postives = 154/169 (91.12%), Query Frame = 2
Query:  212 DHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 718
            D EYDYLFK+VLIGDSGVGKSN+LSRFTRNEF LESKSTIGVEFATR++QV+GKT+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDI K  T++NV RWL+ELRDHADSNIVIM+ GNKSDL HLRAV  ++  + AEK GLSF+ETSAL++TNVE AFQTILTEIY
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RB11A_PONAB (Ras-related protein Rab-11A OS=Pongo abelii GN=RAB11A PE=2 SV=3)

HSP 1 Score: 281.182 bits (718), Expect = 4.644e-75
Identity = 138/169 (81.66%), Postives = 154/169 (91.12%), Query Frame = 2
Query:  212 DHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 718
            D EYDYLFK+VLIGDSGVGKSN+LSRFTRNEF LESKSTIGVEFATR++QV+GKT+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDI K  T++NV RWL+ELRDHADSNIVIM+ GNKSDL HLRAV  ++  + AEK GLSF+ETSAL++TNVE AFQTILTEIY
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173          
The following BLAST results are available for this feature:
BLAST of CF834085 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11C_LOTJA9.951e-9487.06Ras-related protein Rab11C OS=Lotus japonicus GN=R... [more]
RB2BV_BETVU2.451e-9287.06Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]
RAA2C_ARATH4.622e-9186.14Ras-related protein RABA2c OS=Arabidopsis thaliana... [more]
RB11A_TOBAC1.644e-8882.09Ras-related protein Rab11A OS=Nicotiana tabacum GN... [more]
RAA2A_ARATH1.648e-8085.06Ras-related protein RABA2a OS=Arabidopsis thaliana... [more]
RGP2_ORYSJ3.671e-8084.48Ras-related protein RGP2 OS=Oryza sativa subsp. ja... [more]
YPTC6_CHLRE1.885e-7680.57Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]
RB11A_RAT4.644e-7581.66Ras-related protein Rab-11A OS=Rattus norvegicus G... [more]
RB11A_RABIT4.644e-7581.66Ras-related protein Rab-11A OS=Oryctolagus cunicul... [more]
RB11A_PONAB4.644e-7581.66Ras-related protein Rab-11A OS=Pongo abelii GN=RAB... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_04O05_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04O05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834085 ID=CF834085; Name=CF834085; organism=Citrus sinensis; type=EST; length=799bp
GGGGGGGCGGACCCCCCNANTTTTTTTTTTTTGTTGTTCCATTCTCTCTC
TCTCTCCCTCCCTCTCTCCCATTGGACAACAAACAACAATCCCCTTGCCC
AATTTCTCTTCCTCCAATCACCGTACCAGGACTCGCATTCTCTCTCGATC
TATCTGCCTTCAAAAGTTCTGTTTGAGAGAGATCGGAGAGGTTGTGATGG
CGAGTAGAGTGGATCACGAGTACGACTATCTGTTCAAGATCGTGTTGATC
GGCGACTCTGGCGTCGGGAAATCGAACATTCTTTCGAGGTTTACGAGGAA
TGAGTTTTGTTTGGAATCTAAATCAACCATCGGTGTTGAATTCGCCACCA
GGACTCTTCAGGTAGAAGGGAAAACAGTTAAGGCACAGATTTGGGATACT
GCAGGCCAGGAGCGGTACCGAGCAATCACCAGTGCCTACTATAGAGGAGC
AGTTGGTGCACTCCTTGTCTATGATATAACCAAGAGGCAAACTTTTGACA
ATGTCCTAAGGTGGCTTCGTGAATTGAGGGACCATGCAGATTCAAACATT
GTCATAATGATGGCTGGAAATAAGTCGGACTTAAATCATCTGAGAGCTGT
TACCGAGGAGGATGGCCATTCTTTAGCTGAGAAGGAAGGTCTCTCATTTC
TTGAGACATCAGCTTTGGAAGCAACCAATGTTGAGAAGGCATTCCAGACC
ATTTTGACAGAGATTTACCACATCATAAGCAAAAAAGCATTAGCAGCCCA
ACAGGCATCTGCTAATACCGCTCTTCCTGGTCAAGGAACCACTATTAAT
back to top