CF834100

Overview
NameCF834100
Unique NameCF834100
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length522
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834100 vs. ExPASy Swiss-Prot
Match: DEF1A_ARATH (Peptide deformylase 1A, chloroplastic OS=Arabidopsis thaliana GN=PDF1A PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 4.947e-29
Identity = 64/80 (80.00%), Postives = 71/80 (88.75%), Query Frame = -1
Query:  154 TTSTISKAGWLLGLGQNKKAM-LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 390
            ++S  +KAGWLLGLG+ KK + LPEIV +GDPVLHE AREVDPGEIGSERIQ IIDDM+KVMR APGVGLAAPQIGVPLR
Sbjct:   48 SSSLSTKAGWLLGLGEKKKKVDLPEIVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVMRLAPGVGLAAPQIGVPLR 127          
BLAST of CF834100 vs. ExPASy Swiss-Prot
Match: DEF1A_SOLLC (Peptide deformylase 1A, chloroplastic OS=Solanum lycopersicum GN=PDF1A PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.489e-25
Identity = 53/82 (64.63%), Postives = 69/82 (84.15%), Query Frame = -1
Query:  154 KARTTSTISKAGWLLGLGQNKKAMLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 399
            K   +S  ++AGW LGLG+ KK  +P+IV+AGDPVLHEP++++   EIGSERIQ II++MVKVMR+APGVGLAAPQIG+PL+
Sbjct:   64 KKNYSSATARAGWFLGLGEKKKQAMPDIVKAGDPVLHEPSQDIPLEEIGSERIQKIIEEMVKVMRNAPGVGLAAPQIGIPLK 145          
BLAST of CF834100 vs. ExPASy Swiss-Prot
Match: DEF1A_ORYSJ (Peptide deformylase 1A, chloroplastic OS=Oryza sativa subsp. japonica GN=PDF1A PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.350e-18
Identity = 54/123 (43.90%), Postives = 73/123 (59.35%), Query Frame = -1
Query:  154 RHIKSAPIILCPTRKLVSSPDFS-NDVTFSPHRKARTTSTISKAGWLLGLGQNK--------KAMLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 495
            R + +A ++L P   L ++   S    +    R +   ++    GWL GL   K          + P  V+AGDPVLHEPA++V PG+I SE++Q +ID MV VMR APGVGLAAPQIGVPL+
Sbjct:    6 RPLSAAALLLSPAAPLPTAVAASARRASPGGRRWSSVRASAGGGGWLSGLLGGKGGGGAPTAMTVTPGTVKAGDPVLHEPAQDVAPGDIPSEKVQGVIDRMVAVMRKAPGVGLAAPQIGVPLK 128          
The following BLAST results are available for this feature:
BLAST of CF834100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
DEF1A_ARATH4.947e-2980.00Peptide deformylase 1A, chloroplastic OS=Arabidops... [more]
DEF1A_SOLLC1.489e-2564.63Peptide deformylase 1A, chloroplastic OS=Solanum l... [more]
DEF1A_ORYSJ1.350e-1843.90Peptide deformylase 1A, chloroplastic OS=Oryza sat... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_04O20_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04O20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834100 ID=CF834100; Name=CF834100; organism=Citrus sinensis; type=EST; length=522bp
TTTTTTTTTTTTTTTCATTACATAATTTCGAACAAAGCATAAATCTCCAT
TATATTTTTATAAAACCAACCATTATTACAAACAAATAACCAAGCTTCAG
AAGGCAACAGTAAATACAACTAACTAAACGAAAAATTAAAGATTAAGACT
AACTCTTAATGGGACTCCAATTTGAGGAGCGGCAAGCCCAACACCAGGAG
CAGACCTCATAACCTTTACCATATCATCAATAATATTCTGTATCCTTTCT
GACCCGATTTCACCAGGGTCAACTTCTCGGGCCGGTTCATGCAAAACCGG
GTCACCCGCTTGTACTATTTCCGGCAGCATCGCTTTCTTGTTTTGTCCCA
GACCCAGAAGCCAACCCGCCTTGCTAATGGTAGATGTCGTGCGGGCTTTC
CGGTGGGGGGAGAATGTTACGTCGTTTGAGAAATCGGGGCTTGAAACCAG
TTTGCGGGTCGGGCACAATATTATCGGAGCGGATTTGATATGTCTTTTGC
CCAGACATATTGGTAGATGACA
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