CF834100
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834100 vs. ExPASy Swiss-Prot
Match: DEF1A_ARATH (Peptide deformylase 1A, chloroplastic OS=Arabidopsis thaliana GN=PDF1A PE=1 SV=2) HSP 1 Score: 127.102 bits (318), Expect = 4.947e-29 Identity = 64/80 (80.00%), Postives = 71/80 (88.75%), Query Frame = -1 Query: 154 TTSTISKAGWLLGLGQNKKAM-LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 390 ++S +KAGWLLGLG+ KK + LPEIV +GDPVLHE AREVDPGEIGSERIQ IIDDM+KVMR APGVGLAAPQIGVPLR Sbjct: 48 SSSLSTKAGWLLGLGEKKKKVDLPEIVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVMRLAPGVGLAAPQIGVPLR 127
BLAST of CF834100 vs. ExPASy Swiss-Prot
Match: DEF1A_SOLLC (Peptide deformylase 1A, chloroplastic OS=Solanum lycopersicum GN=PDF1A PE=2 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 1.489e-25 Identity = 53/82 (64.63%), Postives = 69/82 (84.15%), Query Frame = -1 Query: 154 KARTTSTISKAGWLLGLGQNKKAMLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 399 K +S ++AGW LGLG+ KK +P+IV+AGDPVLHEP++++ EIGSERIQ II++MVKVMR+APGVGLAAPQIG+PL+ Sbjct: 64 KKNYSSATARAGWFLGLGEKKKQAMPDIVKAGDPVLHEPSQDIPLEEIGSERIQKIIEEMVKVMRNAPGVGLAAPQIGIPLK 145
BLAST of CF834100 vs. ExPASy Swiss-Prot
Match: DEF1A_ORYSJ (Peptide deformylase 1A, chloroplastic OS=Oryza sativa subsp. japonica GN=PDF1A PE=2 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.350e-18 Identity = 54/123 (43.90%), Postives = 73/123 (59.35%), Query Frame = -1 Query: 154 RHIKSAPIILCPTRKLVSSPDFS-NDVTFSPHRKARTTSTISKAGWLLGLGQNK--------KAMLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 495 R + +A ++L P L ++ S + R + ++ GWL GL K + P V+AGDPVLHEPA++V PG+I SE++Q +ID MV VMR APGVGLAAPQIGVPL+ Sbjct: 6 RPLSAAALLLSPAAPLPTAVAASARRASPGGRRWSSVRASAGGGGWLSGLLGGKGGGGAPTAMTVTPGTVKAGDPVLHEPAQDVAPGDIPSEKVQGVIDRMVAVMRKAPGVGLAAPQIGVPLK 128 The following BLAST results are available for this feature:
BLAST of CF834100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 3
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF834100 ID=CF834100; Name=CF834100; organism=Citrus sinensis; type=EST; length=522bpback to top |