CF834164

Overview
NameCF834164
Unique NameCF834164
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length532
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834164 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.035e-14
Identity = 42/123 (34.15%), Postives = 67/123 (54.47%), Query Frame = -3
Query:  168 LDGAGGFSPHLG--TNGQCPLDIIQ*SSPSERGDNLRLFPSDNYK-IVKVSSDVNLRFPVKVSVKPCNEEPSWKVDSYDDPL----IVTGGSEGHPGAETLVNWFKIEKARKFFIWWCIQYCP 515
            + GAGG    LG  T   CP  ++Q  S  + G  +    +D+   +V+VS+DVN+ F V +  + C+    W++D+YD+      + T G +G PG  TL +WFKIEKA    + +  ++CP
Sbjct:   51 ISGAGGGGLALGRATGQSCPEIVVQRRSDLDNGTPVIFSNADSKDDVVRVSTDVNIEF-VPIRDRLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAG--VLGYKFRFCP 170          

HSP 2 Score: 30.4166 bits (67), Expect = 3.035e-14
Identity = 17/34 (50.00%), Postives = 19/34 (55.88%), Query Frame = -1
Query:   83 YNIVHCPSVCLSCPRRCNKIG-VSNKDGVGRLIL 181
            Y    CPSVC SC   C+ IG  S+ DG  RL L
Sbjct:  164 YKFRFCPSVCDSCTTLCSDIGRHSDDDGQIRLAL 197          
BLAST of CF834164 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 59.3066 bits (142), Expect = 1.460e-13
Identity = 40/117 (34.19%), Postives = 63/117 (53.85%), Query Frame = -3
Query:  210 LIPVL-DGAGGFSPHLGT-NGQ--CPLDIIQ*SSPSERGDNLRLFPSDNYK-IVKVSSDVNLRFPVKVSVKPCNEEPS--WKVDSYDDP----LIVTGGSEGHPGAETLVNWFKIEK 527
            ++PVL D  GG +    T NG   CP  ++Q     +    L  FP +  + +V+VS+D+N+ F    +  PC    S  W++D YD+      +  GG +G+PG ET+ +WFKIE+
Sbjct:   52 IVPVLRDHGGGLTVSATTPNGTFVCPPRVVQTRKEVDHDRPLAFFPENPKEDVVRVSTDLNINFS---AFMPCRWTSSTVWRLDKYDESTGQYFVTIGGVKGNPGPETISSWFKIEE 165          

HSP 2 Score: 35.8094 bits (81), Expect = 1.460e-13
Identity = 13/32 (40.62%), Postives = 19/32 (59.38%), Query Frame = -1
Query:  116 KLGNFSYGGVYNIVHCPSVCLSCPRRCNKIGV 211
            K+  F   G Y +V CP+VC SC  +C  +G+
Sbjct:  162 KIEEFCGSGFYKLVFCPTVCGSCKVKCGDVGI 193          
The following BLAST results are available for this feature:
BLAST of CF834164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ASP_THECC3.035e-1434.1521 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU1.460e-1334.19Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_05A19_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05A19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834164 ID=CF834164; Name=CF834164; organism=Citrus sinensis; type=EST; length=532bp
GCGTTAGACAGCTTGAAGCACCCATTGAACTTTCCTCTGATGGAAAAAAC
AGAACATTCAAGGCCGGTTCATGATCACCAACTAGAATCAGACGTCCAAC
GCCATCCTTATTTGAAACGCCAATTTTGTTGCAACGTCTAGGACAAGATA
GACAGACACTCGGACAATGGACAATATTGTATACACCACCATATGAAAAA
TTTCCGAGCTTTCTCAATCTTAAACCAATTTACCAACGTTTCAGCTCCTG
GGTGGCCCTCACTTCCGCCGGTTACAATTAATGGATCGTCATAGCTATCA
ACTTTCCACGATGGTTCTTCATTACAGGGCTTAACAGAAACTTTTACGGG
GAATCTGAGGTTGACATCACTGGATACCTTGACAATTTTGTAATTGTCGG
ACGGAAATAATCTTAAATTATCTCCCCTTTCGCTAGGAGAACTTTATTGG
ATAATGTCCAAGGGACACTGTCCATTTGTGCCTAGGTGTGGGCTGAATCC
ACCGGCGCCATCTAGGACTGGGATAAGTTTAT
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