CF834168

Overview
NameCF834168
Unique NameCF834168
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834168 vs. ExPASy Swiss-Prot
Match: PPA1_SOLLC (Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.797e-36
Identity = 77/193 (39.90%), Postives = 107/193 (55.44%), Query Frame = -1
Query:   85 PEKCAGYVGHYMLAHQSRMDFEVVVNEAIFYAQTLKLAGDGKNIWVFDIDEPSLFNFPYYAKNGFGVNPYTPTLFNEWVTPGKAXXXXXXXXXXXXXXXXXXXXXXXPGSPEDQRNVPEVNLNHAGFAPWEKLILKGSSPSGETPVVYKSSERKKLEMKGSRIIGNIGDQWSDFLGPNAGNRTFKLPAPMYSI 663
            PE+CA YV  YM+    +M+ + V +EA  YA+++ L  DG+++W+FD+DE  L N PYY+ + +G+  +    F++WV  G A                        G  E  R+V   NL +AGF  W KLIL+GS   G+T   YKS  R  +  +G RI+GN GDQWSD LG +   R+FKLP PMY I
Sbjct:   62 PEECADYVKEYMVGPGYKMEIDRVSDEAGEYAKSVDLGDDGRDVWIFDVDETLLSNLPYYSDHRYGLEVFDDVEFDKWVENGTAPALGSSLKLYQEVLKLGFKVFLLTGRSERHRSVTVENLMNAGFHDWHKLILRGSDDHGKTATTYKSERRNAMVEEGFRIVGNSGDQWSDLLGSSMSYRSFKLPNPMYYI 254          
BLAST of CF834168 vs. ExPASy Swiss-Prot
Match: VSPA_SOYBN (Stem 28 kDa glycoprotein OS=Glycine max GN=VSPA PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.969e-31
Identity = 79/195 (40.51%), Postives = 104/195 (53.33%), Query Frame = -1
Query:   85 PEKCAGYVGHYMLAHQSRMDFEVVVNEAIFYAQTLKLAGDGKNIWVFDIDEPSLFNFPYYAKNGFGVNPYTPTLFNEWVTPGKAXXXXXXXXXXXXXXXXXXXXXXXPGSPEDQRNVPEVNLNHAGFAPWEKLILKG-SSPSGETPVVYKSSERKKLEMKGSRIIGNIGDQWSDFLGPNAG-NRTFKLPAPMYSI 663
            PE+C      Y+   Q R D + V  +A FYA+ L++    K+ +VF ID   L N PYY K+G+GV  +  TL++EWV  G A                        G   D++ V E NL  AG+  WEKLILK    PS    V YK++ R+KL  +G  I+G IGDQWSD LG + G +RTFKLP P+Y I
Sbjct:   61 PEECVEATKEYIHGEQYRSDSKTVNQQAYFYARDLEV--HPKDTFVFSIDGTVLSNIPYYKKHGYGVEKFNSTLYDEWVNKGNAPALPETLKNYNKLVSLGFKIIFLSGRTLDKQAVTEANLKKAGYHTWEKLILKDPQDPSTPNAVSYKTAAREKLIRQGYNIVGIIGDQWSDLLGGHRGESRTFKLPNPLYYI 253          
BLAST of CF834168 vs. ExPASy Swiss-Prot
Match: S25K_SOYBN (Stem 31 kDa glycoprotein (Fragment) OS=Glycine max GN=VSP25 PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 5.598e-30
Identity = 77/191 (40.31%), Postives = 101/191 (52.88%), Query Frame = -1
Query:   97 PEKCAGYVGHYMLAHQSRMDFEVVVNEAIFYAQTLKLAGDGKNIWVFDIDEPSLFNFPYYAKNGFGVNPYTPTLFNEWVTPGKAXXXXXXXXXXXXXXXXXXXXXXXPGSPEDQRNVPEVNLNHAGFAPWEKLILKG-SSPSGETPVVYKSSERKKLEMKGSRIIGNIGDQWSDFLGPNAG-NRTFKLPAP 663
            PE+C      Y+   Q R D + V  +A FYA+ L++    K+ +VF ID   L N PYY K+G+GV  +  TL++EWV  G A                        G   D++ V E NL  AG+  WEKLILK    PS    V YK++ R+KL  +G  I+G IGDQWSD LG + G +RTFKLP P
Sbjct:   58 PEECVEATKEYIHGEQYRSDSKTVNQQAYFYARDLEV--HPKDTFVFSIDGTVLSNIPYYKKHGYGVEKFNSTLYDEWVNKGNAPALPETLKNYNKLVSLGFKIIFLSGRTLDKQAVTEANLKKAGYHTWEKLILKDPQDPSTPNAVSYKTAAREKLIRQGYNIVGIIGDQWSDLLGGHRGESRTFKLPNP 246          
BLAST of CF834168 vs. ExPASy Swiss-Prot
Match: VSPB_SOYBN (Stem 31 kDa glycoprotein OS=Glycine max GN=VSPB PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.779e-29
Identity = 76/194 (39.18%), Postives = 100/194 (51.55%), Query Frame = -1
Query:   85 PEKCAGYVGHYMLAHQSRMDFEVVVNEAIFYAQTLKLAGDGKNIWVFDIDEPSLFNFPYYAKNGFGVNPYTPTLFNEWVTPGKAXXXXXXXXXXXXXXXXXXXXXXXPGSPEDQRNVPEVNLNHAGFAPWEKLILKGSSPSGETPVVYKSSERKKLEMKGSRIIGNIGDQWSDFLGPNAG-NRTFKLPAPMYSI 663
            PE+C      Y+   Q R D + V  +A FYA   ++  +  +I++F ID   L N PYY K+G+GV  +  TL++EWV  G A                        G   D+  V E NL  AGF  WE+LILK         + YKS+ R+ L  +G RI+G IGDQWSD LG + G +RTFKLP PMY I
Sbjct:   62 PEECVEPTKDYINGEQFRSDSKTVNQQAFFYASEREVHHN--DIFIFGIDNTVLSNIPYYEKHGYGVEEFNETLYDEWVNKGDAPALPETLKNYNKLLSLGFKIVFLSGRYLDKMAVTEANLKKAGFHTWEQLILKDPHLITPNALSYKSAMRENLLRQGYRIVGIIGDQWSDLLGDHRGESRTFKLPNPMYYI 253          
BLAST of CF834168 vs. ExPASy Swiss-Prot
Match: VSP2_ARATH (Vegetative storage protein 2 OS=Arabidopsis thaliana GN=VSP2 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.423e-25
Identity = 71/195 (36.41%), Postives = 95/195 (48.72%), Query Frame = -1
Query:   85 PEKCAGYVGHYML-AHQSRMDFEVVVNEAIFYAQTLKLAGDGKNIWVFDIDEPSLFNFPYYAKNGFGVNPYTPTLFNEWVTPGKAXXXXXXXXXXXXXXXXXXXXXXXPGSP-EDQRNVPEVNLNHAGFAPWEKLILKGSSPSGETPVVYKSSERKKLEMKGSRIIGNIGDQWSDFLGPNAGNRTFKLPAPMYSI 663
            P  C  YV  Y++ + Q + D + V  EA FYA+ L L  D  N+W+FD+D+  L + PYYAK G+G     P  +  W+  G +                            +  +NV   NL  AG   W+ LILK +  S    VVYKS  RK L  KG  I+GNIGDQW+D +    G R FKLP P+Y +
Sbjct:   71 PANCKDYVEDYLITSKQYQYDSKTVCKEAYFYAKGLALKNDTVNVWIFDLDDTLLSSIPYYAKYGYGTEKTDPGAYWLWLGTGASTPGLPEALHLYQNIIELGIEPIILSDRWKLWKNVTLDNLEAAGVTYWKHLILKPNG-SNLRQVVYKSKVRKSLVKKGYNIVGNIGDQWADLVEDTPG-RVFKLPNPLYYV 263          
BLAST of CF834168 vs. ExPASy Swiss-Prot
Match: VSP1_ARATH (Vegetative storage protein 1 OS=Arabidopsis thaliana GN=VSP1 PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 7.082e-25
Identity = 70/197 (35.53%), Postives = 94/197 (47.72%), Query Frame = -1
Query:   85 PEKCAGYVGHYML-AHQSRMDFEVVVNEAIFYAQTLKLAGDGKNIWVFDIDEPSLFNFPYYAKNGFGVNPYTPTLFNEWVTPGKAXXXXXXXXXXXXXXXXXXXXXXXPGSP-EDQRNVPEVNLNHAGFAPWEKLILKGSSPSGE--TPVVYKSSERKKLEMKGSRIIGNIGDQWSDFLGPNAGNRTFKLPAPMYSI 663
            P  C  YV  Y++ + Q + D + V  EA FYA+ L L  D  N+W+FD+D+  L + PYYAK G+G     P  +  W+  G++                            +    V   NL   G   W+ LILK   P+G   T VVYKS  R  L  KG  I+GNIGDQW+D +    G R FKLP P+Y +
Sbjct:   76 PANCKAYVEDYLITSKQYQYDSKTVNKEAYFYAKGLALKNDTVNVWIFDLDDTLLSSIPYYAKYGYGTENTAPGAYWSWLESGESTPGLPETLHLYENLLELGIEPIIISDRWKKLSEVTVENLKAVGVTKWKHLILK---PNGSKLTQVVYKSKVRNSLVKKGYNIVGNIGDQWADLVEDTPG-RVFKLPNPLYYV 268          
The following BLAST results are available for this feature:
BLAST of CF834168 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PPA1_SOLLC1.797e-3639.90Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1... [more]
VSPA_SOYBN2.969e-3140.51Stem 28 kDa glycoprotein OS=Glycine max GN=VSPA PE... [more]
S25K_SOYBN5.598e-3040.31Stem 31 kDa glycoprotein (Fragment) OS=Glycine max... [more]
VSPB_SOYBN2.779e-2939.18Stem 31 kDa glycoprotein OS=Glycine max GN=VSPB PE... [more]
VSP2_ARATH5.423e-2536.41Vegetative storage protein 2 OS=Arabidopsis thalia... [more]
VSP1_ARATH7.082e-2535.53Vegetative storage protein 1 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_05A21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05A21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834168 ID=CF834168; Name=CF834168; organism=Citrus sinensis; type=EST; length=663bp
TTTTTTTTTTTTTTTTTGGGGCCCATTGAAGGGCCTTCGATTATTTATTC
AAAATCCCAAGGAAACATTATTTATTAATTAGCCAATGGAATACATTGGG
GCAGGGAGCTTGAACGTCCGATTGCCGGCGTTGGGGCCCAAGAAATCGCT
CCATTGATCACCTATGTTTCCAATAATTCTGGACCCTTTCATCTCAAGCT
TCTTTCTTTCACTTGATTTGTACACCACTGGTGTTTCTCCTGAGGGAGAT
GATCCCTTGAGGATGAGCTTCTCCCAGGGGGCGAATCCAGCATGGTTTAA
ATTAACTTCTGGAACATTTCTCTGATCTTCTGGGCTTCCCGGGAGGAATA
CAATCTTAATTCCAAGCAATAATAATTTTTTGTAAAGCTTAAGGGTCTCT
GGCAGCGGGGGGGCTTTTCCGGGGGTCACCCATTCATTAAACAAAGTAGG
GGTGTATGGGTTCACCCCGAATCCATTCTTAGCATAATATGGGAAATTAA
ATAGCGAGGGTTCATCTATGTCGAAAACCCAAATGTTCTTGCCGTCGCCA
GCAAGCTTGAGGGTCTGCGCATAAAAAATGGCCTCATTAACTACCACTTC
AAAATCCATGCGGGACTGGTGGGCTAACATGTAATGCCCCACGTAACCTG
CACATTTTTCGGG
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