CF834181

Overview
NameCF834181
Unique NameCF834181
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2698 contig Csv1_Contig2698:565..1204. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_LACSA (Peptide methionine sulfoxide reductase OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 9.062e-75
Identity = 128/149 (85.91%), Postives = 138/149 (92.62%), Query Frame = 2
Query:    5 RVPGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQSTEKGCNDPIRCYG 451
            RVPGV+KTEVGYT G+LHNP+Y D+CSGTTNH+EVVR+QYDPK CSFD+LLD FW RHDPT LNRQGNDVGTQYRSGIYFYTPEQEKAA E+ ER QK LNR +VTEILPAKKFYRAEEYHQQYLAKGGRFGF+QSTEKGCNDPIRCYG
Sbjct:  111 RVPGVSKTEVGYTQGFLHNPTYNDICSGTTNHSEVVRVQYDPKACSFDSLLDCFWERHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAIEAKERHQKKLNRTVVTEILPAKKFYRAEEYHQQYLAKGGRFGFRQSTEKGCNDPIRCYG 259          
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_ARATH (Peptide methionine sulfoxide reductase OS=Arabidopsis thaliana GN=PMSR PE=1 SV=2)

HSP 1 Score: 263.462 bits (672), Expect = 6.720e-70
Identity = 118/149 (79.19%), Postives = 135/149 (90.60%), Query Frame = 2
Query:    5 RVPGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQSTEKGCNDPIRCYG 451
            RVPGVTKTEVGY+ G +HNPSYEDVC+GTT HNEVVR+QYDPKECSF++LLD+FW RHDPT LNRQG DVGTQYRSGIY+YT EQE+ A+E++E+QQK+LN++IVTEILPA KFYRAE YHQQYLAKGGR G +QS EKGC DPIRCYG
Sbjct:  110 RVPGVTKTEVGYSHGIVHNPSYEDVCTGTTGHNEVVRVQYDPKECSFESLLDVFWNRHDPTTLNRQGGDVGTQYRSGIYYYTDEQERIAREAVEKQQKILNKRIVTEILPATKFYRAENYHQQYLAKGGRMGLRQSAEKGCKDPIRCYG 258          
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_BRANA (Peptide methionine sulfoxide reductase OS=Brassica napus GN=PMSR PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 1.955e-69
Identity = 119/149 (79.87%), Postives = 134/149 (89.93%), Query Frame = 2
Query:    5 RVPGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQSTEKGCNDPIRCYG 451
            RVPGVTKTEVGY+ G++ NP+YEDVCS TT HNE+VR+QYDPKE SF++LLD+FW RHDPT LNRQGNDVGT+YRSGIYFYT EQEK A+E++E+QQK+LNRKIVTEILPA KFYRAE YHQQYLAKGGR G  QS EKGCNDPIRCYG
Sbjct:  109 RVPGVTKTEVGYSHGFVDNPTYEDVCSETTGHNEIVRVQYDPKEVSFESLLDVFWKRHDPTTLNRQGNDVGTRYRSGIYFYTDEQEKLAREAMEKQQKILNRKIVTEILPATKFYRAENYHQQYLAKGGRMGLSQSAEKGCNDPIRCYG 257          
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_FRAAN (Peptide methionine sulfoxide reductase OS=Fragaria ananassa PE=2 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 1.898e-56
Identity = 101/150 (67.33%), Postives = 124/150 (82.67%), Query Frame = 2
Query:    5 RVPGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-NRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQSTEKGCNDPIRCYG 451
            RV GV KTEVGY+ G++H+P+Y  VCSGTTNH+EVVR+Q+DP+ C +  LL +FW+RHDPT LNRQG DVGTQYRSGIY+Y  EQ+  AK+S E +QK   ++++VTEILPAK+FYRAEEYHQQYL KGG  G KQS +KGCNDPI+CYG
Sbjct:   42 RVVGVIKTEVGYSQGHVHDPNYRLVCSGTTNHSEVVRVQFDPQVCPYSDLLSVFWSRHDPTTLNRQGGDVGTQYRSGIYYYNEEQDCLAKKSKEAKQKEFKDKRVVTEILPAKRFYRAEEYHQQYLEKGGGNGNKQSAQKGCNDPIKCYG 191          
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_SOLLC (Peptide methionine sulfoxide reductase (Fragment) OS=Solanum lycopersicum GN=E4 PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 7.213e-56
Identity = 100/150 (66.67%), Postives = 120/150 (80.00%), Query Frame = 2
Query:    5 RVPGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQK-VLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQSTEKGCNDPIRCYG 451
            RV GV KTEVGY+ G +H+P+Y+ +CSGTT H E +R+Q+DP  C +  LL +FW+RHDPT LNRQGNDVG QYRSGIY+Y   Q + A+ESLE +QK  +++KIVTEILPAK+FYRAEEYHQQYL KGG  G KQS  KGCNDPIRCYG
Sbjct:   47 RVGGVVKTEVGYSQGNVHDPNYKLICSGTTEHAEAIRIQFDPNVCPYSNLLSLFWSRHDPTTLNRQGNDVGKQYRSGIYYYNDAQAQLARESLEAKQKEFMDKKIVTEILPAKRFYRAEEYHQQYLEKGGGRGCKQSAAKGCNDPIRCYG 196          
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA1_SYNY3 (Peptide methionine sulfoxide reductase msrA 1 OS=Synechocystis sp. (strain PCC 6803) GN=msrA1 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.182e-36
Identity = 73/131 (55.73%), Postives = 94/131 (71.76%), Query Frame = 2
Query:    5 RVPGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEILPAKKFYRAEEYHQQYLAK 385
            ++PGV  T VGY  GY  NP+Y++VC+G T HNEVV + +DP++ S+D LL +FW  H+PT   RQGNDVGTQYRSGIY Y+  Q++AA  S +  Q+ L +    +I TEILPA  FY AE+YHQQYLAK
Sbjct:   67 QIPGVYSTAVGYAAGYTPNPTYQEVCTGMTGHNEVVLVAFDPQQVSYDQLLKVFWESHNPTQGMRQGNDVGTQYRSGIYTYSEAQQQAALASKQAYQQALQQAGYGEITTEILPAPDFYYAEDYHQQYLAK 197          
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_DICDI (Peptide methionine sulfoxide reductase OS=Dictyostelium discoideum GN=msrA PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.349e-36
Identity = 73/125 (58.40%), Postives = 89/125 (71.20%), Query Frame = 2
Query:    5 RVPGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYL 379
            RV GVTKT VGYT G + NP+Y  VCSG T   E V L+YDP++ +++ LL +FW++HDPT LNRQGNDVGTQYRSGIY++  EQ+  A  S E++Q      I TEILPA  FY AE  HQQYL
Sbjct:   20 RVAGVTKTRVGYTNGTVENPTYRQVCSGKTGCAEAVELEYDPEKVTYNQLLGLFWSKHDPTTLNRQGNDVGTQYRSGIYYHNEEQKNEAIASKEKEQLKYKDPISTEILPAGVFYPAETEHQQYL 144          
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_CYAP8 (Peptide methionine sulfoxide reductase msrA OS=Cyanothece sp. (strain PCC 8801) GN=msrA PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.151e-35
Identity = 74/128 (57.81%), Postives = 91/128 (71.09%), Query Frame = 2
Query:   14 GVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEILPAKKFYRAEEYHQQYLAK 385
            GV  T VGY  G   NP+Y++VC+G T HNEVV + +DPK  S++ LL +FW  H+PT   RQGNDVGTQYRSGIY Y+P+ +KAA+ S E  QK LN+     I TEIL A +FY AE+YHQQYLAK
Sbjct:   69 GVYTTAVGYAAGITPNPTYQEVCTGLTGHNEVVLVVFDPKIISYEELLKVFWESHNPTQGMRQGNDVGTQYRSGIYVYSPQHKKAAETSKEVYQKALNQAGYGDITTEILDAPEFYYAEDYHQQYLAK 196          
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_GEOSL (Peptide methionine sulfoxide reductase msrA OS=Geobacter sulfurreducens GN=msrA PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.115e-35
Identity = 72/131 (54.96%), Postives = 93/131 (70.99%), Query Frame = 2
Query:    5 RVPGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLN--RKIVTEILPAKKFYRAEEYHQQYLAKGG 391
            RVPGV  T  GY  G+  +P+YE+VCS TT H EVV + +DP   ++D LL +FW  HDPT LNRQG D+GT YRS I++++P+QE+AA+ SLE +Q+     R IVTEI+PA  F+ AEEYHQ YL K G
Sbjct:   26 RVPGVVSTLAGYMGGWKEHPTYEEVCSKTTGHAEVVEVTFDPAAVTYDHLLRVFWDCHDPTQLNRQGPDIGTNYRSVIFYHSPDQERAARASLEHEQRSGRHARPIVTEIVPAATFWWAEEYHQHYLEKRG 156          
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_ENTS8 (Peptide methionine sulfoxide reductase msrA OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=msrA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.374e-35
Identity = 75/131 (57.25%), Postives = 86/131 (65.65%), Query Frame = 2
Query:    8 VPGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLN-----RKIVTEILPAKKFYRAEEYHQQYLAK 385
            +PGV  T  GYT GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP    RQGNDVGTQYRS IY  TPEQE AA+ SLER +  +      R I TEI PAK FY AE+ HQQYL K
Sbjct:   63 LPGVYSTAAGYTGGYTPNPTYREVCSGQTGHAEAVRVVYDPNVISYEQLLQVFWENHDPAQGMRQGNDVGTQYRSAIYPLTPEQEAAAQASLERFRAAMEAAGDYRHITTEIAPAKPFYYAEDEHQQYLHK 193          
The following BLAST results are available for this feature:
BLAST of CF834181 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
MSRA_LACSA9.062e-7585.91Peptide methionine sulfoxide reductase OS=Lactuca ... [more]
MSRA_ARATH6.720e-7079.19Peptide methionine sulfoxide reductase OS=Arabidop... [more]
MSRA_BRANA1.955e-6979.87Peptide methionine sulfoxide reductase OS=Brassica... [more]
MSRA_FRAAN1.898e-5667.33Peptide methionine sulfoxide reductase OS=Fragaria... [more]
MSRA_SOLLC7.213e-5666.67Peptide methionine sulfoxide reductase (Fragment) ... [more]
MSRA1_SYNY32.182e-3655.73Peptide methionine sulfoxide reductase msrA 1 OS=S... [more]
MSRA_DICDI6.349e-3658.40Peptide methionine sulfoxide reductase OS=Dictyost... [more]
MSRA_CYAP83.151e-3557.81Peptide methionine sulfoxide reductase msrA OS=Cya... [more]
MSRA_GEOSL4.115e-3554.96Peptide methionine sulfoxide reductase msrA OS=Geo... [more]
MSRA_ENTS85.374e-3557.25Peptide methionine sulfoxide reductase msrA OS=Ent... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05B06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834181 ID=CF834181; Name=CF834181; organism=Citrus sinensis; type=EST; length=639bp
CGTTAGAGTGCCAGGTGTCACCAAGACCGAAGTTGGGTACACCTAAGGCT
ACTTGCATAACCCTAGCTACGAGGACGTGTGTAGTGGGACTACCAATCAT
AATGAAGTTGTTAGGCTTCAGTATGATCCTAAGGAGTGTAGTTTCGATAC
TTTGCTTGATATGTTTTGGGCTCGCCATGATCCTACCATGCTTAATCGGC
AGGGTAATGATGTTGGAACACAGTACAGATCTGGAATTTATTTTTACACT
CCTGAGCAAGAGAAGGCAGCCAAGGAGTCCTTGGAGAGACAGCAGAAGGT
CTTGAACAGGAAAATTGTCACCGAAATCCTACCTGCCAAGAAGTTCTACC
GAGCTGAGGAATACCACCAGCAGTATCTTGCAAAAGGGGGTCGATTTGGA
TTCAAACAATCTACTGAGAAAGGCTGCAATGATCCTATCAGGTGCTATGG
CTAAATAGTACCCTGCTATTACAGTTAATTTTCAGCTTTTTTCTGAATCT
TAGCCATTATAACTTGTGTTCTTGCTATGATAAGAATGCCAGATGTATTT
AGTGTCTGAACTTGGGTATGTAACTAGTCATAGTCTCTTAAACCATCATC
TATATCTGTAATTTCACTGGTCATGTTTTTTAATGTTTA
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