CF834185

Overview
NameCF834185
Unique NameCF834185
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length414
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6751 contig Csv1_Contig6751:726..1139. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834185 vs. ExPASy Swiss-Prot
Match: ILVB3_BRANA (Acetolactate synthase 3, chloroplastic OS=Brassica napus PE=3 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 4.782e-66
Identity = 119/137 (86.86%), Postives = 129/137 (94.16%), Query Frame = 2
Query:    2 VANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYEANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPMIPSGGAFIDVI 412
            VANPDAI+VDIDGDGSFIMNVQELATI+VE LP+KILLLNNQHLGMVMQWEDRFY+ANRAHTYLGDP+RE+EIFPNML+FA ACGIP A+VT+K +LR AIQTMLDTPGPYLLDVI PHQEHVLPMIPSGG F DVI
Sbjct:  507 VANPDAIVVDIDGDGSFIMNVQELATIRVENLPVKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPARENEIFPNMLQFAGACGIPAARVTKKEELREAIQTMLDTPGPYLLDVICPHQEHVLPMIPSGGTFKDVI 643          
BLAST of CF834185 vs. ExPASy Swiss-Prot
Match: ILVB1_BRANA (Acetolactate synthase 1, chloroplastic OS=Brassica napus PE=3 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 4.782e-66
Identity = 119/137 (86.86%), Postives = 129/137 (94.16%), Query Frame = 2
Query:    2 VANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYEANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPMIPSGGAFIDVI 412
            VANPDAI+VDIDGDGSFIMNVQELATI+VE LP+KILLLNNQHLGMVMQWEDRFY+ANRAHTYLGDP+RE+EIFPNML+FA ACGIP A+VT+K +LR AIQTMLDTPGPYLLDVI PHQEHVLPMIPSGG F DVI
Sbjct:  510 VANPDAIVVDIDGDGSFIMNVQELATIRVENLPVKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPARENEIFPNMLQFAGACGIPAARVTKKEELREAIQTMLDTPGPYLLDVICPHQEHVLPMIPSGGTFKDVI 646          
BLAST of CF834185 vs. ExPASy Swiss-Prot
Match: ILVB_ARATH (Acetolactate synthase, chloroplastic OS=Arabidopsis thaliana GN=CSR 1.2 PE=1 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 1.065e-65
Identity = 118/137 (86.13%), Postives = 128/137 (93.43%), Query Frame = 2
Query:    2 VANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYEANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPMIPSGGAFIDVI 412
            VANPDAI+VDIDGDGSFIMNVQELATI+VE LP+K+LLLNNQHLGMVMQWEDRFY+ANRAHT+LGDP++E EIFPNML FA ACGIP A+VT+KADLR AIQTMLDTPGPYLLDVI PHQEHVLPMIPSGG F DVI
Sbjct:  525 VANPDAIVVDIDGDGSFIMNVQELATIRVENLPVKVLLLNNQHLGMVMQWEDRFYKANRAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVTKKADLREAIQTMLDTPGPYLLDVICPHQEHVLPMIPSGGTFNDVI 661          
BLAST of CF834185 vs. ExPASy Swiss-Prot
Match: ILVB2_TOBAC (Acetolactate synthase 2, chloroplastic OS=Nicotiana tabacum GN=ALS SURB PE=1 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 2.009e-64
Identity = 115/137 (83.94%), Postives = 126/137 (91.97%), Query Frame = 2
Query:    2 VANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYEANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPMIPSGGAFIDVI 412
            V  PD ++VDIDGDGSFIMNVQELATIKVE LP+KI+LLNNQHLGMV+QWEDRFY+ANRAHTYLG+PS E+EIFPNMLKFAEACG+P A+VT + DLRAAIQ MLDTPGPYLLDVI PHQEHVLPMIPSGGAF DVI
Sbjct:  519 VGRPDEVVVDIDGDGSFIMNVQELATIKVENLPVKIMLLNNQHLGMVVQWEDRFYKANRAHTYLGNPSNEAEIFPNMLKFAEACGVPAARVTHRDDLRAAIQKMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVI 655          
BLAST of CF834185 vs. ExPASy Swiss-Prot
Match: ILVB1_TOBAC (Acetolactate synthase 1, chloroplastic OS=Nicotiana tabacum GN=ALS SURA PE=1 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 2.009e-64
Identity = 115/137 (83.94%), Postives = 126/137 (91.97%), Query Frame = 2
Query:    2 VANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYEANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPMIPSGGAFIDVI 412
            V  PD ++VDIDGDGSFIMNVQELATIKVE LP+KI+LLNNQHLGMV+QWEDRFY+ANRAHTYLG+PS E+EIFPNMLKFAEACG+P A+VT + DLRAAIQ MLDTPGPYLLDVI PHQEHVLPMIPSGGAF DVI
Sbjct:  522 VGRPDEVVVDIDGDGSFIMNVQELATIKVENLPVKIMLLNNQHLGMVVQWEDRFYKANRAHTYLGNPSNEAEIFPNMLKFAEACGVPAARVTHRDDLRAAIQKMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVI 658          
BLAST of CF834185 vs. ExPASy Swiss-Prot
Match: ILVB2_BRANA (Acetolactate synthase 2, chloroplastic OS=Brassica napus PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 4.057e-57
Identity = 98/137 (71.53%), Postives = 120/137 (87.59%), Query Frame = 2
Query:    2 VANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYEANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPMIPSGGAFIDVI 412
            +ANP A++VDIDGDGSFIMN+QELATI+VE LP+K+LL+NNQHLGMV+QWED FY ANRA ++LGDP+    +FP+ML FA +CGIP A+VTR+ DLR AIQTMLDTPGP+LLDV+ PHQ+HVLP+IPSGG F D+I
Sbjct:  500 IANPGAVVVDIDGDGSFIMNIQELATIRVENLPVKVLLINNQHLGMVLQWEDHFYAANRADSFLGDPANPEAVFPDMLLFAASCGIPAARVTRREDLREAIQTMLDTPGPFLLDVVCPHQDHVLPLIPSGGTFKDII 636          
BLAST of CF834185 vs. ExPASy Swiss-Prot
Match: ILVB1_ORYSJ (Acetolactate synthase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=ALS1 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 3.215e-54
Identity = 94/137 (68.61%), Postives = 119/137 (86.86%), Query Frame = 2
Query:    2 VANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYEANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPMIPSGGAFIDVI 412
            VANP   +VDIDGDGSF+MN+QELA I++E LP+K+++LNNQHLGMV+QWEDRFY+ANRAHTYLG+P  ESEI+P+ +  A+   IP  +VT+K+++RAAI+ ML+TPGPYLLD+I PHQEHVLPMIPSGGAF D+I
Sbjct:  499 VANPGVTVVDIDGDGSFLMNIQELALIRIENLPVKVMVLNNQHLGMVVQWEDRFYKANRAHTYLGNPECESEIYPDFVTIAKGFNIPAVRVTKKSEVRAAIKKMLETPGPYLLDIIVPHQEHVLPMIPSGGAFKDMI 635          
BLAST of CF834185 vs. ExPASy Swiss-Prot
Match: ILVB1_MAIZE (Acetolactate synthase 1, chloroplastic OS=Zea mays GN=ALS1 PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 4.199e-54
Identity = 95/137 (69.34%), Postives = 117/137 (85.40%), Query Frame = 2
Query:    2 VANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYEANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPMIPSGGAFIDVI 412
            VANP   +VDIDGDGSF+MNVQELA I++E LP+K+ +LNNQHLGMV+QWEDRFY+ANRAHTYLG+P  ESEI+P+ +  A+   IP  +VT+K ++RAAI+ ML+TPGPYLLD+I PHQEHVLPMIPSGGAF D+I
Sbjct:  493 VANPGVTVVDIDGDGSFLMNVQELAMIRIENLPVKVFVLNNQHLGMVVQWEDRFYKANRAHTYLGNPENESEIYPDFVTIAKGFNIPAVRVTKKNEVRAAIKKMLETPGPYLLDIIVPHQEHVLPMIPSGGAFKDMI 629          
BLAST of CF834185 vs. ExPASy Swiss-Prot
Match: ILVB2_MAIZE (Acetolactate synthase 2, chloroplastic OS=Zea mays GN=ALS2 PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 1.034e-52
Identity = 91/137 (66.42%), Postives = 116/137 (84.67%), Query Frame = 2
Query:    2 VANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYEANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPMIPSGGAFIDVI 412
            VANP   +VDIDGDGSF+MN+QELA I++E LP+K+ +LNNQHLGMV+QWEDRFY+ANRAHT+LG+P  ESEI+P+ +  A+   IP  +VT+K+++ AAI+ ML+ PGPYLLD+I PHQEHVLPMIPSGGAF D+I
Sbjct:  493 VANPGVTVVDIDGDGSFLMNIQELAMIRIENLPVKVFVLNNQHLGMVVQWEDRFYKANRAHTFLGNPENESEIYPDFVAIAKGFNIPAVRVTKKSEVHAAIKKMLEAPGPYLLDIIVPHQEHVLPMIPSGGAFKDMI 629          
BLAST of CF834185 vs. ExPASy Swiss-Prot
Match: ILVB2_ORYSJ (Probable acetolactate synthase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=ALS2 PE=2 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 5.675e-51
Identity = 90/139 (64.75%), Postives = 115/139 (82.73%), Query Frame = 2
Query:    2 VANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYEANRAHTYLGDPSRE--SEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPMIPSGGAFIDVI 412
            VANP A +VDIDGDGS +MN+QELA ++VE LP+K+++LNNQHLGMV+QWEDRFY+ANRAHTYLG+P+     E++P+ +  A   GIP A+VTRK ++RAA++ M+  PGPYLLDV+ PHQEHVLPMIPS GAF D+I
Sbjct:  516 VANPGATVVDIDGDGSLLMNIQELAMVRVEDLPVKVMVLNNQHLGMVVQWEDRFYDANRAHTYLGNPAANGGGEVYPDFVTIAGGFGIPAARVTRKGEVRAAVEEMMAAPGPYLLDVVVPHQEHVLPMIPSNGAFKDII 654          
The following BLAST results are available for this feature:
BLAST of CF834185 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
ILVB3_BRANA4.782e-6686.86Acetolactate synthase 3, chloroplastic OS=Brassica... [more]
ILVB1_BRANA4.782e-6686.86Acetolactate synthase 1, chloroplastic OS=Brassica... [more]
ILVB_ARATH1.065e-6586.13Acetolactate synthase, chloroplastic OS=Arabidopsi... [more]
ILVB2_TOBAC2.009e-6483.94Acetolactate synthase 2, chloroplastic OS=Nicotian... [more]
ILVB1_TOBAC2.009e-6483.94Acetolactate synthase 1, chloroplastic OS=Nicotian... [more]
ILVB2_BRANA4.057e-5771.53Acetolactate synthase 2, chloroplastic OS=Brassica... [more]
ILVB1_ORYSJ3.215e-5468.61Acetolactate synthase 1, chloroplastic OS=Oryza sa... [more]
ILVB1_MAIZE4.199e-5469.34Acetolactate synthase 1, chloroplastic OS=Zea mays... [more]
ILVB2_MAIZE1.034e-5266.42Acetolactate synthase 2, chloroplastic OS=Zea mays... [more]
ILVB2_ORYSJ5.675e-5164.75Probable acetolactate synthase 2, chloroplastic OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05B09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834185 ID=CF834185; Name=CF834185; organism=Citrus sinensis; type=EST; length=414bp
TGTTGCAAATCCTGATGCCATCATTGTAGATATTGATGGTGATGGGAGTT
TCATCATGAACGTCCAGGAGTTGGCGACTATTAAGGTAGAGAAACTCCCC
ATCAAGATATTGCTGTTGAATAATCAGCACTTGGGCATGGTGATGCAATG
GGAGGATCGGTTTTACGAGGCAAATAGGGCTCACACGTATTTGGGAGATC
CATCAAGAGAGTCTGAAATATTTCCGAATATGTTGAAGTTTGCAGAAGCC
TGTGGAATACCTGGAGCACAAGTAACAAGGAAGGCAGATCTGAGAGCCGC
AATTCAGACTATGTTGGACACTCCTGGACCATACCTTCTGGACGTCATCT
TTCCTCATCAAGAGCATGTCCTGCCTATGATCCCCAGTGGTGGAGCTTTT
ATAGATGTGATAAC
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