CF834190

Overview
NameCF834190
Unique NameCF834190
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.174e-60
Identity = 103/127 (81.10%), Postives = 117/127 (92.13%), Query Frame = -2
Query:  231 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPGV 611
            RVQCMKVWPP GLKK+ETLSYLPPLSDEAL KEI++LIR+ WIPCLEFELE G+V+REHH SPGY DGRYWTMWKLPM+GCTD+ QV+KEVGE +KEYP++F+R+IGFDN RQVQCISFI AKPPGV
Sbjct:   54 RVQCMKVWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKPPGV 180          
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS_PYRPY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 3.907e-56
Identity = 95/126 (75.40%), Postives = 112/126 (88.89%), Query Frame = -2
Query:  234 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 611
            RVQCM+VWPP GLKKFETLSYLPPLS E+L KE+++L+R  W+PCLEFELE G+V+RE+H+SPGY DGRYWTMWKLPM+GCTD++QVLKE+ E +K YP SF+RIIGFDN RQVQCISFIA KP G
Sbjct:   57 RVQCMQVWPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKPAG 182          
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 5.102e-56
Identity = 95/126 (75.40%), Postives = 112/126 (88.89%), Query Frame = -2
Query:  234 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 611
            RVQCM+VWPP GLKKFETLSYLPPLS E+L KE+++L+R  W+PCLEFELE G+V+RE+H+SPGY DGRYWTMWKLPM+GCTD++QVLKE+ E +K YP SF+RIIGFDN RQVQCISFIA KP G
Sbjct:   57 RVQCMQVWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKPAG 182          
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS3_AMAHP (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 3.307e-55
Identity = 93/126 (73.81%), Postives = 108/126 (85.71%), Query Frame = -2
Query:  234 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 611
            RVQCM+VWPP G KKFETLSYLPPLSD  LL ++ +L+ +GWIPC+EFELE  +V+RE+H+SPGY DGRYWTMWKLPMYGCTD  QVL EV E +K YP +F+RIIGFDNKRQVQC+SFIA KPPG
Sbjct:   54 RVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNNGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSFIAFKPPG 179          
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS_GLYTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tabacina GN=RBCS PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 9.623e-55
Identity = 94/125 (75.20%), Postives = 108/125 (86.40%), Query Frame = -2
Query:  237 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 611
            RVQCM+VWP TG KKFETLSYLP L D  L KE+ +L+R GWIPCLEFELE G+V+REHH+SPGY DGRYWTMWKLPM+GCTDA+QVLKE+ E +  YP++F+RIIGFDN RQVQCISFIA KPP
Sbjct:   52 RVQCMQVWPTTGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNAFIRIIGFDNVRQVQCISFIAYKPP 176          
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS_BETVE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.144e-54
Identity = 95/127 (74.80%), Postives = 111/127 (87.40%), Query Frame = -2
Query:  231 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPGV 611
            RVQCM+VWPP GLKKFETLSYLPPLS E L KE+++L+R   IPCLEFELE G+V+REH++SPGY DGRYWTMWKLPM+GC D++QVLKE+ E +K YP +F+RIIGFDNKRQVQ ISFIA KPPGV
Sbjct:   56 RVQCMQVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQIISFIAYKPPGV 182          
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS3_SOLTU (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Solanum tuberosum GN=RBCS-3 PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 3.657e-54
Identity = 92/126 (73.02%), Postives = 110/126 (87.30%), Query Frame = -2
Query:  234 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 611
            RV+CM+VWPP  +KK+ETLSYLP LSDE LLKE+ +L+++GW+PCLEFE E G+V+RE+HKSPGY DGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISFIA KP G
Sbjct:   55 RVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180          
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS1_AMAHP (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 3.657e-54
Identity = 92/126 (73.02%), Postives = 106/126 (84.13%), Query Frame = -2
Query:  234 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 611
            RVQCM+VWPP G KKFETLSYLPPLSD  LL ++ +L+  GWIPC+EFELE  +V+RE+H+SPGY DGRYWTMWKLPMYGCTD  QVL EV E +K YP +F+RIIGFDNKRQVQC+SFIA KP G
Sbjct:   56 RVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSFIAYKPAG 181          
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS_HORVU (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 6.237e-54
Identity = 94/126 (74.60%), Postives = 112/126 (88.89%), Query Frame = -2
Query:  234 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 611
            R++CM+VWP  G+KKFETLSYLPPLS EALLK++++LIRS W+PCLEF  + G++FREH+ SPGY DGRYWTMWKLPM+GCTDATQVL EV EV+KEYP ++VRIIGFDN RQVQC+SFIA KPPG
Sbjct:   43 RIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPPG 167          
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS8_NICPL (Ribulose bisphosphate carboxylase small chain 8B, chloroplastic OS=Nicotiana plumbaginifolia GN=RBCS-8B PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 6.237e-54
Identity = 94/126 (74.60%), Postives = 107/126 (84.92%), Query Frame = -2
Query:  234 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 611
            RVQCM+VWPP   KK+ETLSYLP LS E LL EI +L++SGW+PCLEFE E+G+V+REHH SPGY DGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRIIGFDN RQVQCISFIA KP G
Sbjct:   54 RVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEIEYLLKSGWVPCLEFETERGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179          
The following BLAST results are available for this feature:
BLAST of CF834190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
RBS_LACSA1.174e-6081.10Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_PYRPY3.907e-5675.40Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MALSP5.102e-5675.40Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_AMAHP3.307e-5573.81Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS_GLYTA9.623e-5575.20Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_BETVE2.144e-5474.80Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_SOLTU3.657e-5473.02Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS1_AMAHP3.657e-5473.02Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_HORVU6.237e-5474.60Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS8_NICPL6.237e-5474.60Ribulose bisphosphate carboxylase small chain 8B, ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05B12_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834190 ID=CF834190; Name=CF834190; organism=Citrus sinensis; type=EST; length=612bp
TTTTTTTTTTTTTTTTTAAAGGATTCAATTATTAAAATATATACCTTAAA
AAAAAAAAGAAGCCAAAGTCGGGGAGAAAACCAAACATGTTTGAGCAGCA
GCAACAGCAGCCTAAGTACAAATTAAACGCAAACCGAACCCCCATTGATC
GAATGATCATTATGGGGGTTACACATAATAATAATCAACAATATTGCATG
GGGGGTTACACAAATTTAATTGGGAACCTAAACGCCTGGGGGCTTGGCAG
CAATGAAACTGATGCACTGCACTTGACGCTTGTTGTCAAATCCGATAATT
CGGACGAATGAATGTGGGTATTCCTTCTGGACCTCCCCAACCTCCTTCAA
AACCTGGGTTGCATCTGTGCACCCATACATGGGCAGCTTCCACATTGTCC
AGTAGCGTCCATCGGAGTATCCTGGTGACTTGTGGTGCTCACGGAACACC
CATCCTTTCTCCAACTCGAATTCCAAGCAGGGAATCCAGCCGGAGCGGAT
AAGGAAATTGATTTCCTTGAGCAAAGCTTCATCGGACAGTGGCGGGAGGT
ATGAAAGAGTCTCGAACTTCTTCAAGCCAGTTGGTGGCCACACCTTCATG
CATTGGACTCTT
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