CF834252

Overview
NameCF834252
Unique NameCF834252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length565
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9802 contig Csv1_Contig9802:534..1097. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834252 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.224e-50
Identity = 85/134 (63.43%), Postives = 107/134 (79.85%), Query Frame = -2
Query:  163 GRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIISGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLD*YNQGPYGHNL 564
            GRGP+QL+WN NY +CG A+GVDLLNNPDLL++DP +SFKSA WFWMT Q PKPSCH VII  W PS++D  A R+PGYG+ TNII+GG+ECGKGWN+ V +RIGF+  +C   G+  G+NLD YNQ P+G+ +
Sbjct:  186 GRGPMQLSWNYNYGQCGRAIGVDLLNNPDLLSSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRVPGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYNQSPFGNGV 319          
BLAST of CF834252 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 4.652e-50
Identity = 86/132 (65.15%), Postives = 104/132 (78.79%), Query Frame = -2
Query:  169 GRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIISGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLD*YNQGPYGH 564
            GRGP+QLTWN NY +CG A+GVDLLNNPDLLATDP +SFKSA WFWMT Q PKPSCH+VII  W PS +D  A R+PG+GL TNII+GG+ECG+GWN+ V +RIGF+  +C   G+  G+NLD YNQ  Y +
Sbjct:  183 GRGPMQLTWNYNYGQCGRAIGVDLLNNPDLLATDPTISFKSAFWFWMTPQSPKPSCHDVIIGAWSPSGSDQAAGRVPGFGLITNIINGGLECGQGWNAKVEDRIGFYKRYCDTLGVGYGNNLDCYNQRSYNN 314          
BLAST of CF834252 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 1.768e-49
Identity = 84/134 (62.69%), Postives = 105/134 (78.36%), Query Frame = -2
Query:  163 GRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIISGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLD*YNQGPYGHNL 564
            GRGP+QL+WN NY +CG A+GVDLLNNPDLL++DP +SFKSA WFWMT Q PKPSCH VII  W PS++D  A R  GYG+ TNII+GG+ECGKGWN+ V +RIGF+  +C   G+  G+NLD YNQ P+G+ +
Sbjct:  164 GRGPMQLSWNYNYGQCGRAIGVDLLNNPDLLSSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRATGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYNQSPFGNGV 297          
BLAST of CF834252 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 2.309e-49
Identity = 87/134 (64.93%), Postives = 107/134 (79.85%), Query Frame = -2
Query:  163 GRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIISGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLD*YNQGPYGHNL 564
            GRGPIQ++WN NY +CG A+GVDLLNNPDL+ATDPV+SFK+A+WFWMT Q PKPSCH+VI   W PS+ D  A RLPGYG  TNII+GG+ECG+G +S V +RIGF+  +C  FGI  GDNLD Y+Q P+G +L
Sbjct:  178 GRGPIQISWNYNYGQCGRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVITGGWTPSSADRAAGRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFYKRYCDIFGIGYGDNLDCYSQRPFGSSL 311          
BLAST of CF834252 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 8.773e-49
Identity = 86/135 (63.70%), Postives = 108/135 (80.00%), Query Frame = -2
Query:  160 GRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIISGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLD*YNQGPYGHNLM 564
            GRGPIQ++ N NY  CG A+GVDLLNNPDL+ATDPV+SFKSA+WFWMT Q PKPSCH+VII  W+PSA D  A+RLPG+G+ TNII+GG+ECG+G +S V +RIGF+  +C   G+ PGDNLD  NQ  +G+ L+
Sbjct:  191 GRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQPSAGDRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLL 325          
BLAST of CF834252 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 192.2 bits (487), Expect = 1.496e-48
Identity = 85/135 (62.96%), Postives = 106/135 (78.52%), Query Frame = -2
Query:  160 GRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIISGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLD*YNQGPYGHNLM 564
            GRGP+QL+WN NY  CG A+GVDLLNNPDL+A D V++FK+AIWFWMTAQPPKPSCH VI  +W+PS  D  A RLPGYG+ TNII+GG+ECG+G +  VA+RIGF+  +C  FG+ PG NLD YNQ  + + L+
Sbjct:  197 GRGPMQLSWNYNYGLCGRAIGVDLLNNPDLVANDAVIAFKAAIWFWMTAQPPKPSCHAVIAGQWQPSDADRAAGRLPGYGVITNIINGGLECGRGQDGRVADRIGFYQRYCNIFGVNPGGNLDCYNQRSFVNGLL 331          
BLAST of CF834252 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 3.334e-48
Identity = 85/135 (62.96%), Postives = 108/135 (80.00%), Query Frame = -2
Query:  160 GRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIISGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLD*YNQGPYGHNLM 564
            GRGPIQ++ N NY  CG A+GVDLLNNPDL+ATDPV+SFKSA+WFWMT Q PKPSCH+VII  W+PS+ D  A+RLPG+G+ TNII+GG+ECG+G +S V +RIGF+  +C   G+ PGDNLD  NQ  +G+ L+
Sbjct:  186 GRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQPSSADRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLL 320          
BLAST of CF834252 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 4.354e-48
Identity = 85/135 (62.96%), Postives = 107/135 (79.26%), Query Frame = -2
Query:  160 GRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIISGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLD*YNQGPYGHNLM 564
            GRGPIQ++WN NY +CG A+GVDLLN PDL+ATD V+SFKSA+WFWMTAQ PKPS H+VI   W PS+ DV A RLPGYG  TNII+GG+ECG+G +S V +RIGFF  +C   G+  G+NLD Y+Q P+G++L+
Sbjct:  186 GRGPIQISWNYNYGQCGRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPFGNSLL 320          
BLAST of CF834252 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 4.354e-48
Identity = 84/131 (64.12%), Postives = 104/131 (79.39%), Query Frame = -2
Query:  172 GRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIISGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLD*YNQGPYG 564
            GRGP+QL+WN NY  CGEAL V+LL NPDL+ATD VLSFK+A+WFWMT Q PKPSCH+V+   W+PSA D  A RLPGYG+ TN+++GG+ECGKG N  VA+R+GFF  +CG  G+  G+NLD YNQ P+G
Sbjct:  113 GRGPLQLSWNYNYGPCGEALRVNLLGNPDLVATDRVLSFKTALWFWMTPQAPKPSCHDVLTGRWQPSAADTAAGRLPGYGVLTNLLNGGLECGKGPNPQVADRLGFFRRYCGLLGVGTGNNLDCYNQRPFG 243          
BLAST of CF834252 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 7.427e-48
Identity = 85/134 (63.43%), Postives = 106/134 (79.10%), Query Frame = -2
Query:  163 GRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIISGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLD*YNQGPYGHNL 564
            GRGPIQ++WN NY +CG A+GVDLLN PDL+ATD V+SFKSA+WFWMTAQ PKPS H+VI   W PS+ DV A RLPGYG  TNII+GG+ECG+G +S V +RIGFF  +C   G+  G+NLD Y+Q P+G++L
Sbjct:  185 GRGPIQISWNYNYGQCGRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPFGNSL 318          
The following BLAST results are available for this feature:
BLAST of CF834252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI1_GOSHI1.224e-5063.43Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHI1_THECC4.652e-5065.15Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHI2_GOSHI1.768e-4962.69Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI2_PEA2.309e-4964.93Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHI1_TOBAC8.773e-4963.70Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHIB_ARATH1.496e-4862.96Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHI2_TOBAC3.334e-4862.96Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHIT_PHAVU4.354e-4862.96Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHIT_CARPA4.354e-4864.12Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI5_PHAVU7.427e-4863.43Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05D04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834252 ID=CF834252; Name=CF834252; organism=Citrus sinensis; type=EST; length=565bp
TGTTGGATCAGTCTTATGTAATTTCCCTACAATAAGAGCGTAACAAACTA
ACAATTTATTTGTCCACCTACAAGTGTGACATCTAAAGTTCTTATTACCT
AGCATTTTATTAAGCTTATTTTACTAAAACGCTGATCATGATGATCACAT
AGATTGTGCCATCAAATTATGGCCATAAGGCCCTTGGTTGTATCAATCAA
GATTGTCGCCAGGCTGAATCCCAAACTTGCCACAAAAAGTGGTAAAGAAC
CCAATACGGTTAGCTACAAAGCTATTCCAACCTTTGCCACATTCAATTCC
ACCGCTGATTATATTTGTGGTTAGACCGTATCCCGGAAGCCGGCTGGCGT
TTACGTCATTTGCTGATGGTTTCCATTCGTCGATAATGACTTCGTGGCAC
GATGGCTTTGGTGGCTGTGCAGTCATCCAGAACCAGATTGCTGACTTGAA
TGATAGTACTGGATCAGTGGCAAGAAGGTCTGGATTGTTCAACAAGTCCA
CCCCCAAGGCTTCTCCGCACCTTAAGTAATTGCAATTCCAAGTGAGTTGA
ATTGGACCTCGGCCA
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