CF834263

Overview
NameCF834263
Unique NameCF834263
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length713
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10290 contig Csv1_Contig10290:366..1078. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834263 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.798e-12
Identity = 51/187 (27.27%), Postives = 91/187 (48.66%), Query Frame = -3
Query:  142 PILDVYGNQVDSSHRYYLVSALWGVKTGGGISADKGKNGQCPTDVIQLSPKDKRGKNLVLLPNDN-SIIVRESTNIKLKFSRVSSLQQCNKDSLWKVDNDNASLGKQFITIGEGK------TCQNLFKLEKVSASIFDMKIALDIPCLYKIVHCSTPVNGSCDTLCKDVGVSNVDGVQRLVVVDDND 681
            P+LD  G+++ +  +YY++S++ G   GGG++  +     CP  V+Q       G  ++    D+   +VR ST++ ++F  +   + C+  ++W++DN + S GK ++T    K      T  + FK+EK                 YK   C + V  SC TLC D+G  + D  Q  + + DN+
Sbjct:   30 PVLDTDGDELQTGVQYYVLSSISGA-GGGGLALGRATGQSCPEIVVQRRSDLDNGTPVIFSNADSKDDVVRVSTDVNIEFVPIRD-RLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAGV------------LGYKFRFCPS-VCDSCTTLCSDIGRHSDDDGQIRLALSDNE 201          
BLAST of CF834263 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.330e-11
Identity = 61/199 (30.65%), Postives = 95/199 (47.74%), Query Frame = -3
Query:  151 PQLGASEY--EPILDVYGNQVDSSHRYYLVSALWGVKTGGGISADKGK-NGQ--CPTDVIQLSPKDKRGKNLVLLP-NDNSIIVRESTNIKLKFSRVSSLQQCNKDSLWKVDNDNASLGKQFITIGEGK------TCQNLFKLEKVSASIFDMKIALDIPCLYKIVHCSTPVNGSCDTLCKDVGV-SNVDGVQRLVVVD 708
            P L A++    P+LD+ G ++ +   YY+V  L     GGG++      NG   CP  V+Q   +    + L   P N    +VR ST++ + FS     +  +  ++W++D  + S G+ F+TIG  K      T  + FK+E+   S F           YK+V C T V GSC   C DVG+  +  G +RL + D
Sbjct:   24 PLLSAADSAPNPVLDIDGEKLRTGTNYYIVPVLRD--HGGGLTVSATTPNGTFVCPPRVVQTRKEVDHDRPLAFFPENPKEDVVRVSTDLNINFSAFMPCRWTSS-TVWRLDKYDESTGQYFVTIGGVKGNPGPETISSWFKIEEFCGSGF-----------YKLVFCPT-VCGSCKVKCGDVGIYIDQKGRRRLALSD 207          
BLAST of CF834263 vs. ExPASy Swiss-Prot
Match: SPOR1_IPOBA (Sporamin A OS=Ipomoea batatas PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.601e-11
Identity = 48/144 (33.33%), Postives = 77/144 (53.47%), Query Frame = -3
Query:  280 ASEYEPILDVYGNQVDSSHRYYLVSALWGVKTGGGISADKGKNGQCPTDVIQLSPKD-KRGKNLVLLP---NDNSIIVRESTNIKLKFSRVSSLQQCNKDSLWKVDNDNASLGKQFITIGE-GKTCQNLFKLEKVSASIFDMKI 696
            AS   P+LD+ G++V +   YY+VSA+WG   GG   A      +C TDVI +SP D   G  + + P   +  S +V  ST    +F+ +++ + C  +  W + +D+AS G+ F+  GE      N FK+E V A++   K+
Sbjct:   37 ASSETPVLDINGDEVRAGGNYYMVSAIWGAGGGGLRLAHLDMMSKCATDVI-VSPNDLDNGDPITITPATADPESTVVMASTYQTFRFN-IATNKLCVNNVNWGIQHDSAS-GQYFLKAGEFVSDNSNQFKIELVDANLNSYKL 177          
The following BLAST results are available for this feature:
BLAST of CF834263 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ASP_THECC7.798e-1227.2721 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU1.330e-1130.65Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
SPOR1_IPOBA6.601e-1133.33Sporamin A OS=Ipomoea batatas PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_05D14_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05D14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834263 ID=CF834263; Name=CF834263; organism=Citrus sinensis; type=EST; length=713bp
TTTTTTTTTTTTAAGAGTACTAGCCTGGTCCATTATTTAGAATAATACCC
CTTGCTGGCTTATTCATTACAGAGACGGAAATAACATAGACCTTCCACTA
TCAGCTGGAAATAACACAACAGGCAAAGGCAGATTTGGCTGATCATTATC
ATCAACCACAACTAGACGTTGGACGCCATCCACATTAGAAACGCCAACGT
CTTTGCAGAGTGTATCACAAGAACCATTAACAGGTGTTGAACAATGAACA
ATTTTGTATAGACAGGGAATGTCTAGTGCTATTTTCATATCAAATATTGA
TGCACTAACTTTCTCAAGTTTAAACAAATTTTGACACGTTTTACCTTCAC
CGATTGTTATAAACTGCTTTCCTAATGAAGCGTTATCGTTGTCAACTTTC
CACAACGAATCTTTGTTACACTGCTGAAGAGAAGAAACTCTTGAGAATTT
CAATTTAATATTAGTGGACTCCCGGACAATTATGGAATTGTCATTCGGAA
GTAAAACTAAATTCTTTCCCCTTTTGTCCTTAGGACTTAATTGGATAACA
TCCGTTGGACACTGTCCATTTTTGCCTTTGTCCGCGCTAATTCCACCGCC
GGTTTTAACTCCCCAGAGTGCTGAGACAAGATAATACCTGTGGCTGGAGT
CCACCTGGTTGCCATAGACATCTAAGATAGGTTCATATTCTGAGGCGCCC
AACTGAGGTTTTG
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