CF834278

Overview
NameCF834278
Unique NameCF834278
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834278 vs. ExPASy Swiss-Prot
Match: CYPH_CATRO (Peptidyl-prolyl cis-trans isomerase OS=Catharanthus roseus GN=PCKR1 PE=2 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 2.354e-75
Identity = 138/168 (82.14%), Postives = 145/168 (86.31%), Query Frame = -3
Query:  230 KVFFDMTVGGQPAGRIVMELLPDVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFRRVIPGFMCQXXXXXXXXXXXGESICGSKFADENFVKKHTGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 733
            +VFFDM+VGGQPAGRIVMEL  D TPRTAENFRALCTGEKG G+SGKPLHYK SSF RVIPGFMCQ           GESI G+KFADENF+KKHTGPGILSMANAGP T GSQFF+CTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRT K VV+ DCGQLS
Sbjct:    5 RVFFDMSVGGQPAGRIVMELFADTTPRTAENFRALCTGEKGTGRSGKPLHYKDSSFHRVIPGFMCQGGDFTAGNGTGGESIYGAKFADENFIKKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTAKKVVVEDCGQLS 172          
BLAST of CF834278 vs. ExPASy Swiss-Prot
Match: CYPH_SOLLC (Peptidyl-prolyl cis-trans isomerase OS=Solanum lycopersicum GN=CYP PE=2 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.292e-73
Identity = 132/167 (79.04%), Postives = 143/167 (85.63%), Query Frame = -3
Query:  233 KVFFDMTVGGQPAGRIVMELLPDVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFRRVIPGFMCQXXXXXXXXXXXGESICGSKFADENFVKKHTGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 733
            KVFFD+T+GG PAGR+VMEL  D TP+TAENFRALCTGEKG+GK GKPLHYKGS+F RVIPGFMCQ           GESI G+KF DENFVKKHTGPGILSMANAGPGT GSQFF+CTAKTEWL+GKHVVFGQVVEGMDV+K  E VGSSSGR +KPVVIADCGQL
Sbjct:    5 KVFFDLTIGGAPAGRVVMELFADTTPKTAENFRALCTGEKGVGKMGKPLHYKGSTFHRVIPGFMCQGGDFTAGNGTGGESIYGAKFNDENFVKKHTGPGILSMANAGPGTNGSQFFICTAKTEWLNGKHVVFGQVVEGMDVIKKAEAVGSSSGRCSKPVVIADCGQL 171          
BLAST of CF834278 vs. ExPASy Swiss-Prot
Match: CYPH_LUPLU (Peptidyl-prolyl cis-trans isomerase OS=Lupinus luteus PE=2 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 2.693e-71
Identity = 126/168 (75.00%), Postives = 141/168 (83.93%), Query Frame = -3
Query:  230 KVFFDMTVGGQPAGRIVMELLPDVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFRRVIPGFMCQXXXXXXXXXXXGESICGSKFADENFVKKHTGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 733
            KVFFDM + G PAGRIVMEL  D TPRTAENFRALCTGEKG+G+SGKPLHYKGS+F RVIP FMCQ            ESI G+KFADENF+K+HTGPGILSMANAG GT GSQFF+CT KTEWLDGKHVVFG+V+EGM+VV+ IEKVGS SG+T++PV IADCGQLS
Sbjct:    5 KVFFDMAIAGNPAGRIVMELYADTTPRTAENFRALCTGEKGVGRSGKPLHYKGSTFHRVIPNFMCQGGDFTAGNGTGAESIYGAKFADENFIKRHTGPGILSMANAGAGTNGSQFFICTEKTEWLDGKHVVFGKVIEGMNVVRDIEKVGSGSGKTSRPVTIADCGQLS 172          
BLAST of CF834278 vs. ExPASy Swiss-Prot
Match: CP19B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Arabidopsis thaliana GN=CYP19-2 PE=1 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 6.000e-71
Identity = 127/168 (75.60%), Postives = 142/168 (84.52%), Query Frame = -3
Query:  230 KVFFDMTVGGQPAGRIVMELLPDVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFRRVIPGFMCQXXXXXXXXXXXGESICGSKFADENFVKKHTGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 733
            KVFFDMT+GG PAG+IVMEL  D TP+TAENFRALCTGEKG+G+SGKPLH+KGSSF RVIP FMCQ           GESI G+KF DENF +KHTGPGILSMANAG  T GSQFF+CT KT+WLDGKHVVFGQVVEG+DVVKAIEK+GSSSG+  KPVVIADCG++S
Sbjct:    6 KVFFDMTIGGAPAGKIVMELYTDKTPKTAENFRALCTGEKGVGRSGKPLHFKGSSFHRVIPNFMCQGGDFTKGNGTGGESIYGAKFEDENFERKHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAIEKIGSSSGKPTKPVVIADCGEIS 173          
BLAST of CF834278 vs. ExPASy Swiss-Prot
Match: CP18C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Arabidopsis thaliana GN=CYP18-3 PE=1 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 7.836e-71
Identity = 129/168 (76.79%), Postives = 140/168 (83.33%), Query Frame = -3
Query:  230 KVFFDMTVGGQPAGRIVMELLPDVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFRRVIPGFMCQXXXXXXXXXXXGESICGSKFADENFVKKHTGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 733
            KV+FDMT+ GQPAGRIVMEL  D TPRTAENFRALCTGEKG+G +GKPLH+KGS F RVIP FMCQ           GESI GSKF DENF +KHTGPGILSMANAG  T GSQFF+CT KT+WLDGKHVVFGQVVEG+DVVKAIEKVGSSSG+  KPVV+ADCGQLS
Sbjct:    5 KVYFDMTIDGQPAGRIVMELYTDKTPRTAENFRALCTGEKGVGGTGKPLHFKGSKFHRVIPNFMCQGGDFTAGNGTGGESIYGSKFEDENFERKHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAIEKVGSSSGKPTKPVVVADCGQLS 172          
BLAST of CF834278 vs. ExPASy Swiss-Prot
Match: CP19A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Arabidopsis thaliana GN=CYP19-1 PE=1 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 1.023e-70
Identity = 130/168 (77.38%), Postives = 140/168 (83.33%), Query Frame = -3
Query:  230 KVFFDMTVGGQPAGRIVMELLPDVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFRRVIPGFMCQXXXXXXXXXXXGESICGSKFADENFVKKHTGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 733
            KV+FDMTVGG+ AGRIVMEL  D TP TAENFRALCTGE+GIGK GKPLHYKGSSF RVIP FMCQ           GESI GSKF DENF+KKHTGPGILSMANAG  T GSQFF+CT KT WLDGKHVVFGQVVEG++VV+ IEKVGS SGRT+KPVVIADCGQ+S
Sbjct:    6 KVYFDMTVGGKSAGRIVMELYADTTPETAENFRALCTGERGIGKQGKPLHYKGSSFHRVIPKFMCQGGDFTAGNGTGGESIYGSKFKDENFIKKHTGPGILSMANAGANTNGSQFFICTEKTSWLDGKHVVFGQVVEGLNVVRDIEKVGSDSGRTSKPVVIADCGQIS 173          
BLAST of CF834278 vs. ExPASy Swiss-Prot
Match: CYPH_BRANA (Peptidyl-prolyl cis-trans isomerase OS=Brassica napus GN=CYP PE=2 SV=2)

HSP 1 Score: 254.603 bits (649), Expect = 4.024e-67
Identity = 126/167 (75.45%), Postives = 133/167 (79.64%), Query Frame = -3
Query:  233 KVFFDMTVGGQPAGRIVMELLPDVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFRRVIPGFMCQXXXXXXXXXXXGESICGSKFADENFVKKHTGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 733
            KV+FDMTVG + AGRIVMEL  D  P TAENFRALCTGE+GIGKSGKPLHYKGS+F RVIP FMCQ           GESI G KF DENFVKKHTGPGILSM NAG  T GSQFF+CT KT WLDGKHVVFGQVVEGMDVV+ IEKVGS SGRT+K VV  DCGQL
Sbjct:    5 KVYFDMTVGDKAAGRIVMELYADTVPETAENFRALCTGERGIGKSGKPLHYKGSAFHRVIPKFMCQGGDFTAGNGTGGESIYGMKFKDENFVKKHTGPGILSMRNAGSNTNGSQFFICTEKTSWLDGKHVVFGQVVEGMDVVRDIEKVGSDSGRTSKKVVTCDCGQL 171          
BLAST of CF834278 vs. ExPASy Swiss-Prot
Match: CP18D_ARATH (Peptidyl-prolyl cis-trans isomerase CYP18-4 OS=Arabidopsis thaliana GN=CYP18-4 PE=1 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.529e-66
Identity = 122/168 (72.62%), Postives = 135/168 (80.36%), Query Frame = -3
Query:  230 KVFFDMTVGGQPAGRIVMELLPDVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFRRVIPGFMCQXXXXXXXXXXXGESICGSKFADENFVKKHTGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 733
            +VFFDM++ G P GRI MEL  D TP TAENFRALCTGEKG+GK GKPLH+KGS F RVIPGFMCQ           GESI G+KF DENF+KKHTG GILSMAN+GP T GSQFF+CT KT WLDGKHVVFGQVV+G+DVVKAIEKVGS SG+T+K V I DCGQLS
Sbjct:    5 RVFFDMSLSGTPIGRIEMELFADTTPNTAENFRALCTGEKGMGKLGKPLHFKGSIFHRVIPGFMCQGGDFTAKNGTGGESIYGAKFKDENFIKKHTGAGILSMANSGPNTNGSQFFICTDKTSWLDGKHVVFGQVVKGLDVVKAIEKVGSDSGKTSKVVTITDCGQLS 172          
BLAST of CF834278 vs. ExPASy Swiss-Prot
Match: CYPH_MAIZE (Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN=CYP PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 7.590e-66
Identity = 122/168 (72.62%), Postives = 134/168 (79.76%), Query Frame = -3
Query:  230 KVFFDMTVGGQPAGRIVMELLPDVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFRRVIPGFMCQXXXXXXXXXXXGESICGSKFADENFVKKHTGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 733
            +VFFDMTVGG PAGRIVMEL  +  P+TAENFRALCTGEKG+GKSGKPLHYKGS+F RVIP FMCQ           GESI G KF DE FV+K   PG+LSMANAGP T GSQFF+CT  T WLDGKHVVFGQVVEGMDVVKAIEKVG+ +G T+K V +ADCGQLS
Sbjct:    5 RVFFDMTVGGAPAGRIVMELYANEVPKTAENFRALCTGEKGVGKSGKPLHYKGSTFHRVIPEFMCQGGDFTRGNGTGGESIYGEKFPDEKFVRKQPAPGVLSMANAGPNTNGSQFFICTVATPWLDGKHVVFGQVVEGMDVVKAIEKVGTRNGSTSKVVKVADCGQLS 172          
BLAST of CF834278 vs. ExPASy Swiss-Prot
Match: CYP3_CAEEL (Peptidyl-prolyl cis-trans isomerase 3 OS=Caenorhabditis elegans GN=cyn-3 PE=1 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.583e-63
Identity = 117/167 (70.06%), Postives = 132/167 (79.04%), Query Frame = -3
Query:  233 KVFFDMTVGGQPAGRIVMELLPDVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFRRVIPGFMCQXXXXXXXXXXXGESICGSKFADENFVKKHTGPGILSMANAGPGTTGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 733
            KVFFD+T+GG+ +GRIVMEL  DV P+TA NFRALCTGE GIGKSGKPLH+KGS F R+IP FM Q           GESI G KF DENF +KHTGPG+LSMANAGP T GSQFF+CT KTEWLDGKHVVFG+VVEG+DVVKA+E  GS SG+  K  +IADCGQL
Sbjct:    5 KVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIADCGQL 171          
The following BLAST results are available for this feature:
BLAST of CF834278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
CYPH_CATRO2.354e-7582.14Peptidyl-prolyl cis-trans isomerase OS=Catharanthu... [more]
CYPH_SOLLC1.292e-7379.04Peptidyl-prolyl cis-trans isomerase OS=Solanum lyc... [more]
CYPH_LUPLU2.693e-7175.00Peptidyl-prolyl cis-trans isomerase OS=Lupinus lut... [more]
CP19B_ARATH6.000e-7175.60Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Ara... [more]
CP18C_ARATH7.836e-7176.79Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Ara... [more]
CP19A_ARATH1.023e-7077.38Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Ara... [more]
CYPH_BRANA4.024e-6775.45Peptidyl-prolyl cis-trans isomerase OS=Brassica na... [more]
CP18D_ARATH1.529e-6672.62Peptidyl-prolyl cis-trans isomerase CYP18-4 OS=Ara... [more]
CYPH_MAIZE7.590e-6672.62Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN... [more]
CYP3_CAEEL1.583e-6370.06Peptidyl-prolyl cis-trans isomerase 3 OS=Caenorhab... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05E01_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834278 ID=CF834278; Name=CF834278; organism=Citrus sinensis; type=EST; length=735bp
TTTTTTTTTTTTTTATTTAAAAGGCAGCTCATAGAAAGACATCAAAAACA
GGTCATCAAGAACCACCACCGGAGACCCGATCCAACCCGAACAAGTAACA
TAGCAGGAAAATTAGATAAAGATTAAAAGTCCTACAGACACGGCCACATA
GTAATAGATAACATAATCACCATCACGATCGCGATCAGACGGCTCGTGAT
GATGGCGATCATTATCATGATCAAATCTAAGACAATTGACCGCAATCAGC
GATCACGACGGGCTTGTTGGTCCTTCCGGAGCTGGACCCCACTTTCTCGA
TGGCCTTGACGACGTCCATTCCTTCGACGACTTGACCGAACACAACGTGC
TTCCCATCGAGCCACTCGGTCTTGGCCGTACAGACGAAGAACTGAGATCC
GGTGGTTCCGGGTCCGGCATTCGCCATGGAGAGGATTCCGGGGCCGGTGT
GCTTCTTCACGAAGTTCTCATCGGCGAATTTTGAGCCGCAGATTGATTCG
CCTCCGGTGCCGTTTCCGGCGGTGAAGTCTCCCCCCTGGCACATGAATCC
GGGGATCACACGGCGGAAGGACGAGCCCTTGTAGTGGAGGGGCTTGCCGG
ACTTGCCGATGCCTTTCTCGCCGGTGCAGAGGGCGCGGAAGTTCTCGGCG
GTTCGGGGGGTGACATCGGGGAGGAGCTCCATCACGATCCTGCCGGCGGG
CTGACCGCCGACGGTCATGTCAAAGAACACTTTGG
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