CF834399

Overview
NameCF834399
Unique NameCF834399
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834399_ssr93 microsatellite CF834399_ssr93:93..104. BLAST: Citrus ESTs to Prunus persica proteins V1
CF834399_ssr105 microsatellite CF834399_ssr105:105..118. BLAST: Citrus ESTs to Prunus persica proteins V1
CF834399_ssr119 microsatellite CF834399_ssr119:119..138. BLAST: Citrus ESTs to Prunus persica proteins V1
CF834399_ssr118 microsatellite CF834399_ssr118:118..137. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF834399 vs. ExPASy Swiss-Prot
Match: ANTA_GENTR (Anthocyanin 5-aromatic acyltransferase OS=Gentiana triflora PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.008e-18
Identity = 53/159 (33.33%), Postives = 77/159 (48.43%), Query Frame = -1
Query:  200 EANTTVRFVIATDCRSRLDPPIPANYFGNCTGGEFGEAKASDFMQENGVAFVAHKLSDLIKGI--KQGAVLGSEDEFL---NGMAKMREAQQLKISVAGSNRFDVYGSDFGWGRPEKVEVVSIDTTGAISLAETRDGGGGFEIGVVLEKQQMEVFASLF 661
            + N    F    DCR  L PP P NYFGNC      +A   + + + G+      + + I+     +  VL     +L   NG+   R      + + GS +FD YG DFGWG+P K ++ S+D    I + ++RD   G EIGV L K  M+ FA +F
Sbjct:  308 DENELEYFSFTADCRGLLTPPCPPNYFGNCLASCVAKATHKELVGDKGLLVAVAAIGEAIEKRLHNEKGVLADAKTWLSESNGIPSKRF-----LGITGSPKFDSYGVDFGWGKPAKFDITSVDYAELIYVIQSRDFEKGVEIGVSLPKIHMDAFAKIF 461          
BLAST of CF834399 vs. ExPASy Swiss-Prot
Match: DCR_ARATH (BAHD acyltransferase DCR OS=Arabidopsis thaliana GN=DCR PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 46/155 (29.68%), Postives = 72/155 (46.45%), Query Frame = -1
Query:  218 ARDVEANTTVRFVIATDCRSRLDPPIPANYFGNCTGGEFGEAKASDFMQENGVAFVAHKLSDLIKGIKQGAVLGSEDEFLNG--MAKMREAQQLKISVAGSNRFDVYGSDFGWGRPEKVEVVSIDT-TGAISLAETRDGGGGFEIGVVLEKQQME 673
            AR ++      F +  DCR R+DPP+P  YFGN     F    A+  +  +G  F A  +   I       +    DE+     + + ++A    ++V  S RF VY  DFG+G+PE V   S +   G + L + + GG   ++ + LE   ME
Sbjct:  286 ARGLKPEDITIFTVFADCRRRVDPPMPEEYFGNLIQAIF-TGTAAGLLAAHGPEFGASVIQKAIAAHDASVIDARNDEWEKSPKIFQFKDAGVNCVAVGSSPRFRVYEVDFGFGKPETVRSGSNNRFNGMMYLYQGKAGGISIDVEITLEASVME 439          
The following BLAST results are available for this feature:
BLAST of CF834399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ANTA_GENTR4.008e-1833.33Anthocyanin 5-aromatic acyltransferase OS=Gentiana... [more]
DCR_ARATH8.094e-1129.68BAHD acyltransferase DCR OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_05H14_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05H14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834399 ID=CF834399; Name=CF834399; organism=Citrus sinensis; type=EST; length=685bp
TTAAAAAATTCTTATTTTTTCCCTTAAATTGCTGCCCTAACTACTTTTAA
TTTATTATTTAGTACCAAAAATATAAATAGGCGCGCAATAAAACACACAC
ACACATATATATATATATGTGTGTGTGTGTGTGTGTGTTTATAGCTAGCT
AAACTCATGGCATAACATGTGTACTTCAACGATCTTTGAGGGCATCAACA
AAGAGAGAAGCAAAAACCTCCATTTGTTGCTTCTCCAAAACAACACCAAT
CTCAAAACCACCACCTCCATCTCTAGTCTCGGCTAAAGAAATAGCTCCCG
TTGTATCTATAGACACAACCTCCACCTTCTCGGGCCTCCCCCACCCGAAA
TCAGACCCGTAAACATCAAAACGGTTGGATCCGGCCACAGATATCTTTAA
CTGTTGTGCCTCTCGCATCTTTGCCATTCCGTTTAAAAACTCATCCTCTG
ATCCTAGAACAGCACCTTGCTTTATCCCTTTGATCAAATCACTTAACTTG
TGTGCAACAAAGGCAACCCCATTTTCCTGCATGAAATCACTTGCTTTCGC
TTCCCCAAATTCTCCACCAGTACAGTTGCCAAAATAATTAGCAGGAATTG
GAGGATCCAAACGGCTCCTACAATCCGTTGCTATCACAAACCTAACAGTT
GTGTTAGCTTCTACATCTCTGGCTTTAACCAGCCA
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