CF834401

Overview
NameCF834401
Unique NameCF834401
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length404
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834401 vs. ExPASy Swiss-Prot
Match: CHLP_TOBAC (Geranylgeranyl diphosphate reductase, chloroplastic OS=Nicotiana tabacum GN=CHLP PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.852e-41
Identity = 77/87 (88.51%), Postives = 84/87 (96.55%), Query Frame = -3
Query:  142 EKWDKTYWPTYKVLDVLQKVFFRSNPAREAFVEMCPDEYVQKMTFDSYLYQRVVPGNPLEDLKLAVNTIGSSVRANALRREMDKLTI 402
            EKWDKTYWPTYKVLD+LQKVF+RSNPAREAFVEMC DEYVQKMTFDSYLY++V PGNP+EDLKLAVNTIGS VRANALRREMDKL++
Sbjct:  378 EKWDKTYWPTYKVLDILQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKKVAPGNPIEDLKLAVNTIGSLVRANALRREMDKLSV 464          
BLAST of CF834401 vs. ExPASy Swiss-Prot
Match: CHLP_ARATH (Geranylgeranyl diphosphate reductase, chloroplastic OS=Arabidopsis thaliana GN=CHLP PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.916e-38
Identity = 74/87 (85.06%), Postives = 83/87 (95.40%), Query Frame = -3
Query:  142 EKWDKTYWPTYKVLDVLQKVFFRSNPAREAFVEMCPDEYVQKMTFDSYLYQRVVPGNPLEDLKLAVNTIGSSVRANALRREMDKLTI 402
            EKWDKTY PTY+VLDVLQKVF+RSNPAREAFVEMC DEYVQKMTFDSYLY+RV PG+PLED+KLAVNTIGS VRANALRRE++KL++
Sbjct:  381 EKWDKTYLPTYRVLDVLQKVFYRSNPAREAFVEMCNDEYVQKMTFDSYLYKRVAPGSPLEDIKLAVNTIGSLVRANALRREIEKLSV 467          
BLAST of CF834401 vs. ExPASy Swiss-Prot
Match: CHLP_ORYSJ (Geranylgeranyl diphosphate reductase, chloroplastic OS=Oryza sativa subsp. japonica GN=CHLP PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.218e-36
Identity = 69/86 (80.23%), Postives = 81/86 (94.19%), Query Frame = -3
Query:  142 KWDKTYWPTYKVLDVLQKVFFRSNPAREAFVEMCPDEYVQKMTFDSYLYQRVVPGNPLEDLKLAVNTIGSSVRANALRREMDKLTI 399
            ++D+ YWPTYKVLDVLQKVF+RSN AREAFVEMC D+YVQ+MTFDSYLY+RVVPGNPL+D+KLAVNTIGS VRA ALRREM+K+T+
Sbjct:  378 EFDRLYWPTYKVLDVLQKVFYRSNAAREAFVEMCADDYVQRMTFDSYLYKRVVPGNPLDDIKLAVNTIGSLVRATALRREMEKVTL 463          
BLAST of CF834401 vs. ExPASy Swiss-Prot
Match: CHLP_SYNY3 (Geranylgeranyl diphosphate reductase OS=Synechocystis sp. (strain PCC 6803) GN=chlP PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.284e-22
Identity = 48/78 (61.54%), Postives = 60/78 (76.92%), Query Frame = -3
Query:  169 EKWDKTYWPTYKVLDVLQKVFFRSNPAREAFVEMCPDEYVQKMTFDSYLYQRVVPGNPLEDLKLAVNTIGSSVRANAL 402
            ++WDK Y  TY VLD+LQ+VF+R++  REAFVEMC D  VQK+TFDSYLY+ VVP NPL  +K+   TIGS +R NAL
Sbjct:  328 KQWDKRYGATYLVLDILQRVFYRTDATREAFVEMCSDIDVQKLTFDSYLYKTVVPANPLVQMKITAKTIGSLLRGNAL 405          
The following BLAST results are available for this feature:
BLAST of CF834401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CHLP_TOBAC1.852e-4188.51Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_ARATH1.916e-3885.06Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_ORYSJ5.218e-3680.23Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_SYNY33.284e-2261.54Geranylgeranyl diphosphate reductase OS=Synechocys... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_05H15_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05H15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834401 ID=CF834401; Name=CF834401; organism=Citrus sinensis; type=EST; length=404bp
TGCATAAAACTATTCTCTTACATAGTCCTTCTGAAGGGAGGGGGGGAGCC
ATAGGATCAAGTTTGATCTTTTTCTCTTACAACATGCTCAAAAGAAACAT
AAATAAAAGAGTCAAACTCTTTTTCCCGCTCCTTATATTCAGATGGTGAG
CTTATCCATCTCCCTCCTAAGTGCATTAGCTCTCACGGAGCTCCCAATAG
TATTCACAGCCAACTTCAAATCCTCCAATGGGTTTCCGGGCACCACTCTT
TGATACAAATAGCTATCAAATGTCATCTTCTGCACATACTCATCGGGACA
CATCTCCACAAATGCTTCCCTCGCTGGATTCGATCGGAAAAACACCTTCT
GCAATACATCCAGGACCTTATAAGTGGGCCAGTAAGTCTTATCCCACTTC
TCCC
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