CF834401
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834401 vs. ExPASy Swiss-Prot
Match: CHLP_TOBAC (Geranylgeranyl diphosphate reductase, chloroplastic OS=Nicotiana tabacum GN=CHLP PE=2 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 1.852e-41 Identity = 77/87 (88.51%), Postives = 84/87 (96.55%), Query Frame = -3 Query: 142 EKWDKTYWPTYKVLDVLQKVFFRSNPAREAFVEMCPDEYVQKMTFDSYLYQRVVPGNPLEDLKLAVNTIGSSVRANALRREMDKLTI 402 EKWDKTYWPTYKVLD+LQKVF+RSNPAREAFVEMC DEYVQKMTFDSYLY++V PGNP+EDLKLAVNTIGS VRANALRREMDKL++ Sbjct: 378 EKWDKTYWPTYKVLDILQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKKVAPGNPIEDLKLAVNTIGSLVRANALRREMDKLSV 464
BLAST of CF834401 vs. ExPASy Swiss-Prot
Match: CHLP_ARATH (Geranylgeranyl diphosphate reductase, chloroplastic OS=Arabidopsis thaliana GN=CHLP PE=1 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 1.916e-38 Identity = 74/87 (85.06%), Postives = 83/87 (95.40%), Query Frame = -3 Query: 142 EKWDKTYWPTYKVLDVLQKVFFRSNPAREAFVEMCPDEYVQKMTFDSYLYQRVVPGNPLEDLKLAVNTIGSSVRANALRREMDKLTI 402 EKWDKTY PTY+VLDVLQKVF+RSNPAREAFVEMC DEYVQKMTFDSYLY+RV PG+PLED+KLAVNTIGS VRANALRRE++KL++ Sbjct: 381 EKWDKTYLPTYRVLDVLQKVFYRSNPAREAFVEMCNDEYVQKMTFDSYLYKRVAPGSPLEDIKLAVNTIGSLVRANALRREIEKLSV 467
BLAST of CF834401 vs. ExPASy Swiss-Prot
Match: CHLP_ORYSJ (Geranylgeranyl diphosphate reductase, chloroplastic OS=Oryza sativa subsp. japonica GN=CHLP PE=2 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 5.218e-36 Identity = 69/86 (80.23%), Postives = 81/86 (94.19%), Query Frame = -3 Query: 142 KWDKTYWPTYKVLDVLQKVFFRSNPAREAFVEMCPDEYVQKMTFDSYLYQRVVPGNPLEDLKLAVNTIGSSVRANALRREMDKLTI 399 ++D+ YWPTYKVLDVLQKVF+RSN AREAFVEMC D+YVQ+MTFDSYLY+RVVPGNPL+D+KLAVNTIGS VRA ALRREM+K+T+ Sbjct: 378 EFDRLYWPTYKVLDVLQKVFYRSNAAREAFVEMCADDYVQRMTFDSYLYKRVVPGNPLDDIKLAVNTIGSLVRATALRREMEKVTL 463
BLAST of CF834401 vs. ExPASy Swiss-Prot
Match: CHLP_SYNY3 (Geranylgeranyl diphosphate reductase OS=Synechocystis sp. (strain PCC 6803) GN=chlP PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 3.284e-22 Identity = 48/78 (61.54%), Postives = 60/78 (76.92%), Query Frame = -3 Query: 169 EKWDKTYWPTYKVLDVLQKVFFRSNPAREAFVEMCPDEYVQKMTFDSYLYQRVVPGNPLEDLKLAVNTIGSSVRANAL 402 ++WDK Y TY VLD+LQ+VF+R++ REAFVEMC D VQK+TFDSYLY+ VVP NPL +K+ TIGS +R NAL Sbjct: 328 KQWDKRYGATYLVLDILQRVFYRTDATREAFVEMCSDIDVQKLTFDSYLYKTVVPANPLVQMKITAKTIGSLLRGNAL 405 The following BLAST results are available for this feature:
BLAST of CF834401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF834401 ID=CF834401; Name=CF834401; organism=Citrus sinensis; type=EST; length=404bpback to top |