CF834402

Overview
NameCF834402
Unique NameCF834402
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length427
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8642 contig Csv1_Contig8642:455..881. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834402 vs. ExPASy Swiss-Prot
Match: CHLP_TOBAC (Geranylgeranyl diphosphate reductase, chloroplastic OS=Nicotiana tabacum GN=CHLP PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.049e-39
Identity = 74/86 (86.05%), Postives = 81/86 (94.19%), Query Frame = 2
Query:    8 KWDKTYWPTYKVLDVLHKVFYRSNPAREAFVEMCADDYVHNMTFDIYLYKRVAPGNPLEDLKVAVNTIGSLVRANALMREMDKLTI 265
            KWDKTYWPTYKVLD+L KVFYRSNPAREAFVEMCAD+YV  MTFD YLYK+VAPGNP+EDLK+AVNTIGSLVRANAL REMDKL++
Sbjct:  379 KWDKTYWPTYKVLDILQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKKVAPGNPIEDLKLAVNTIGSLVRANALRREMDKLSV 464          
BLAST of CF834402 vs. ExPASy Swiss-Prot
Match: CHLP_ARATH (Geranylgeranyl diphosphate reductase, chloroplastic OS=Arabidopsis thaliana GN=CHLP PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 4.124e-36
Identity = 70/86 (81.40%), Postives = 79/86 (91.86%), Query Frame = 2
Query:    8 KWDKTYWPTYKVLDVLHKVFYRSNPAREAFVEMCADDYVHNMTFDIYLYKRVAPGNPLEDLKVAVNTIGSLVRANALMREMDKLTI 265
            KWDKTY PTY+VLDVL KVFYRSNPAREAFVEMC D+YV  MTFD YLYKRVAPG+PLED+K+AVNTIGSLVRANAL RE++KL++
Sbjct:  382 KWDKTYLPTYRVLDVLQKVFYRSNPAREAFVEMCNDEYVQKMTFDSYLYKRVAPGSPLEDIKLAVNTIGSLVRANALRREIEKLSV 467          
BLAST of CF834402 vs. ExPASy Swiss-Prot
Match: CHLP_ORYSJ (Geranylgeranyl diphosphate reductase, chloroplastic OS=Oryza sativa subsp. japonica GN=CHLP PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.559e-35
Identity = 68/86 (79.07%), Postives = 77/86 (89.53%), Query Frame = 2
Query:    8 KWDKTYWPTYKVLDVLHKVFYRSNPAREAFVEMCADDYVHNMTFDIYLYKRVAPGNPLEDLKVAVNTIGSLVRANALMREMDKLTI 265
            ++D+ YWPTYKVLDVL KVFYRSN AREAFVEMCADDYV  MTFD YLYKRV PGNPL+D+K+AVNTIGSLVRA AL REM+K+T+
Sbjct:  378 EFDRLYWPTYKVLDVLQKVFYRSNAAREAFVEMCADDYVQRMTFDSYLYKRVVPGNPLDDIKLAVNTIGSLVRATALRREMEKVTL 463          
BLAST of CF834402 vs. ExPASy Swiss-Prot
Match: CHLP_SYNY3 (Geranylgeranyl diphosphate reductase OS=Synechocystis sp. (strain PCC 6803) GN=chlP PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.747e-21
Identity = 46/77 (59.74%), Postives = 56/77 (72.73%), Query Frame = 2
Query:    8 KWDKTYWPTYKVLDVLHKVFYRSNPAREAFVEMCADDYVHNMTFDIYLYKRVAPGNPLEDLKVAVNTIGSLVRANAL 238
            +WDK Y  TY VLD+L +VFYR++  REAFVEMC+D  V  +TFD YLYK V P NPL  +K+   TIGSL+R NAL
Sbjct:  329 QWDKRYGATYLVLDILQRVFYRTDATREAFVEMCSDIDVQKLTFDSYLYKTVVPANPLVQMKITAKTIGSLLRGNAL 405          
The following BLAST results are available for this feature:
BLAST of CF834402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CHLP_TOBAC1.049e-3986.05Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_ARATH4.124e-3681.40Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_ORYSJ4.559e-3579.07Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_SYNY33.747e-2159.74Geranylgeranyl diphosphate reductase OS=Synechocys... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_05H15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05H15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834402 ID=CF834402; Name=CF834402; organism=Citrus sinensis; type=EST; length=427bp
CACGTAGAAGTGGGATAAGACTTACTGGCCAACTTATAAGGTACTGGATG
TATTGCATAAGGTGTTTTACCGATCGAATCCAGCGAGGGAAGCATTTGTG
GAGATGTGTGCCGATGATTATGTGCACAACATGACATTTGATATCTATTT
GTATAAAAGAGTGGCGCCCGGAAACCCATTGGAGGATTTGAAGGTGGCTG
TGAATACTATTGGGAGCTTGGTGAGAGCTAATGCACTTATGAGGGAGATG
GATAAGCTGACCATCTGAATATAAGGAGAGGGAAAAAGAGTTTGATTCTT
TTATTTATGTTTCTTTTGAGCATGTTGTAAGAGAAAAAGATCAAACTTGA
TCCTATGGCTCCCCCCCACCCTTCAGTCTAATTATGTAAGAGAATAGTTT
TATGCATTTATAAAAAAAAAAAAAAAA
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