CF834513

Overview
NameCF834513
Unique NameCF834513
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834513 vs. ExPASy Swiss-Prot
Match: CHS2_CITSI (Chalcone synthase 2 OS=Citrus sinensis GN=CHS2 PE=2 SV=1)

HSP 1 Score: 361.688 bits (927), Expect = 2.775e-99
Identity = 184/196 (93.88%), Postives = 185/196 (94.39%), Query Frame = -3
Query:  225 VTFRGPADTHLDSLVGQALFGDGDAAVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVEFXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATSGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 812
            VTFRGPADTHLDSLVGQALFGDG AAVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVE          KATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKAT+GEGLDWGVLFGFGPGLTVETVVLHSVPIKA
Sbjct:  196 VTFRGPADTHLDSLVGQALFGDGAAAVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESKLGLKGEKLKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 391          
BLAST of CF834513 vs. ExPASy Swiss-Prot
Match: CHS1_RUTGR (Chalcone synthase 1 OS=Ruta graveolens GN=CHS1 PE=2 SV=1)

HSP 1 Score: 340.887 bits (873), Expect = 5.070e-93
Identity = 170/196 (86.73%), Postives = 176/196 (89.80%), Query Frame = -3
Query:  225 VTFRGPADTHLDSLVGQALFGDGDAAVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVEFXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATSGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 812
            VTFRGPADTHLDSLVGQALFGDG AAVIVGADPD S+ERPLYQLVS +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF P+GISDWNSIFWIAHPGGPAILDQVE          +ATRQVLSEYGNMSSACVLFILDEMRK   EE +AT+GEGLDWGVLFGFGPGLTVETVVL SVPIKA
Sbjct:  198 VTFRGPADTHLDSLVGQALFGDGAAAVIVGADPDESIERPLYQLVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLKEAFGPIGISDWNSIFWIAHPGGPAILDQVEAKLGLKEEKLRATRQVLSEYGNMSSACVLFILDEMRKNCAEEGRATTGEGLDWGVLFGFGPGLTVETVVLRSVPIKA 393          
BLAST of CF834513 vs. ExPASy Swiss-Prot
Match: CHS2_RUTGR (Chalcone synthase 2 OS=Ruta graveolens GN=CHS2 PE=2 SV=1)

HSP 1 Score: 338.961 bits (868), Expect = 1.926e-92
Identity = 169/196 (86.22%), Postives = 176/196 (89.80%), Query Frame = -3
Query:  225 VTFRGPADTHLDSLVGQALFGDGDAAVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVEFXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATSGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 812
            VTFRGPADTHLDSLVGQALFGDG AAVIVGADP+ S+ERPLYQLVS +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF P+GISDWNSIFWIAHPGGPAILDQVE          +ATRQVLSEYGNMSSACVLFILDEMRKK  EE +AT+GEGLDWGVLFGFGPGLTVETVVL SVPI A
Sbjct:  198 VTFRGPADTHLDSLVGQALFGDGAAAVIVGADPNESIERPLYQLVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLKEAFGPIGISDWNSIFWIAHPGGPAILDQVEAKLGLKEEKLRATRQVLSEYGNMSSACVLFILDEMRKKCAEEGRATTGEGLDWGVLFGFGPGLTVETVVLRSVPINA 393          
BLAST of CF834513 vs. ExPASy Swiss-Prot
Match: CHSY_PETCR (Chalcone synthase OS=Petroselinum crispum GN=CHS PE=3 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 5.605e-92
Identity = 164/193 (84.97%), Postives = 177/193 (91.71%), Query Frame = -3
Query:  234 VTFRGPADTHLDSLVGQALFGDGDAAVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVEFXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATSGEGLDWGVLFGFGPGLTVETVVLHSVP 812
            VTFRGP+D+HLDSLVGQALFGDG AAVI+G+DPD SVERPL+QL+S +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF P+GISDWNS+FWIAHPGGPAILDQVE          +ATRQVLS+YGNMSSACVLFILDEMRKKS+EE KAT+GEGLDWGVLFGFGPGLTVETVVLHSVP
Sbjct:  201 VTFRGPSDSHLDSLVGQALFGDGAAAVILGSDPDLSVERPLFQLISAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLKEAFGPIGISDWNSLFWIAHPGGPAILDQVELKLGLKEEKMRATRQVLSDYGNMSSACVLFILDEMRKKSIEEGKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 393          
BLAST of CF834513 vs. ExPASy Swiss-Prot
Match: CHS2_DAUCA (Chalcone synthase 2 OS=Daucus carota GN=CHS2 PE=2 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 5.605e-92
Identity = 164/193 (84.97%), Postives = 177/193 (91.71%), Query Frame = -3
Query:  234 VTFRGPADTHLDSLVGQALFGDGDAAVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVEFXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATSGEGLDWGVLFGFGPGLTVETVVLHSVP 812
            VTFRGP+D+HLDSLVGQALFGDG AAVIVG+DPD SVERPL+QL+S +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF P+GISDWNS+FWIAHPGGPAILDQVE          +ATRQVLS+YGNMSSACVLFILDEMRKKS+EE KAT+G+GLDWGVLFGFGPGLTVETVVLHSVP
Sbjct:  200 VTFRGPSDSHLDSLVGQALFGDGAAAVIVGSDPDLSVERPLFQLISAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLKEAFGPIGISDWNSLFWIAHPGGPAILDQVELKLGLKEEKMRATRQVLSDYGNMSSACVLFILDEMRKKSIEEGKATTGDGLDWGVLFGFGPGLTVETVVLHSVP 392          
BLAST of CF834513 vs. ExPASy Swiss-Prot
Match: CHS3_RUTGR (Chalcone synthase 3 OS=Ruta graveolens GN=CHS3 PE=2 SV=1)

HSP 1 Score: 336.265 bits (861), Expect = 1.249e-91
Identity = 168/196 (85.71%), Postives = 174/196 (88.78%), Query Frame = -3
Query:  225 VTFRGPADTHLDSLVGQALFGDGDAAVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVEFXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATSGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 812
            VTFRGP DTHLDSLVGQALFGDG AAVIVGADPD S+ERPLYQLVS +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF P+GISDWNSIFWIAHPGGPAILDQVE          +ATR VLSEYGNMSSACVLFILDEMRKK  EE  AT+GEGL+WGVLFGFGPGLTVETVVL SVPIKA
Sbjct:  198 VTFRGPVDTHLDSLVGQALFGDGAAAVIVGADPDESIERPLYQLVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLKEAFGPIGISDWNSIFWIAHPGGPAILDQVEEKLELKEEKLRATRHVLSEYGNMSSACVLFILDEMRKKCAEEGMATTGEGLEWGVLFGFGPGLTVETVVLRSVPIKA 393          
BLAST of CF834513 vs. ExPASy Swiss-Prot
Match: CHSY_BETVE (Chalcone synthase OS=Betula verrucosa GN=CHS PE=2 SV=2)

HSP 1 Score: 333.954 bits (855), Expect = 6.197e-91
Identity = 163/194 (84.02%), Postives = 176/194 (90.72%), Query Frame = -3
Query:  231 VTFRGPADTHLDSLVGQALFGDGDAAVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVEFXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATSGEGLDWGVLFGFGPGLTVETVVLHSVPI 812
            VTFRGP DTHLDSLVGQALFGDG AAVIVGADPDTSVERPL++L+S +QTILPDSDGAIDGHLREVGLTFHLLKDVPG+ISKNIEKSL+EAFAPLGISDWNS+FWIAHPGGPAILDQVE          +ATR VLSEYGNMSSACVLFILDEMR+ S+E  K T+GEGL+WGVLFGFGPGLTVETVVLHSVP+
Sbjct:  196 VTFRGPTDTHLDSLVGQALFGDGAAAVIVGADPDTSVERPLFELISAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGIISKNIEKSLAEAFAPLGISDWNSLFWIAHPGGPAILDQVESKLGLKEEKLRATRHVLSEYGNMSSACVLFILDEMRRNSLEGGKVTTGEGLEWGVLFGFGPGLTVETVVLHSVPV 389          
BLAST of CF834513 vs. ExPASy Swiss-Prot
Match: CHSY_VITVI (Chalcone synthase OS=Vitis vinifera GN=CHS PE=2 SV=1)

HSP 1 Score: 327.791 bits (839), Expect = 4.441e-89
Identity = 160/196 (81.63%), Postives = 174/196 (88.78%), Query Frame = -3
Query:  225 VTFRGPADTHLDSLVGQALFGDGDAAVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVEFXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATSGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 812
            VTFRGP+DTHLDSLVGQALFGDG AAVI+GADPDT +E PL++LVS +QTILPDS+GAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF P+GISDWNS+FWIAHPGGPAILDQVE          +ATR VLSEYGNMSSACVLFILDEMRKKS+EE K ++GEGL+WGVLFGFGPGLTVETVVLHSV   A
Sbjct:  196 VTFRGPSDTHLDSLVGQALFGDGAAAVIIGADPDTKIELPLFELVSAAQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLVEAFTPIGISDWNSLFWIAHPGGPAILDQVELKLGLKEEKLRATRHVLSEYGNMSSACVLFILDEMRKKSIEEGKGSTGEGLEWGVLFGFGPGLTVETVVLHSVSAPA 391          
BLAST of CF834513 vs. ExPASy Swiss-Prot
Match: CHSY_ORYSJ (Chalcone synthase OS=Oryza sativa subsp. japonica GN=CHS PE=2 SV=1)

HSP 1 Score: 326.635 bits (836), Expect = 9.894e-89
Identity = 158/196 (80.61%), Postives = 176/196 (89.80%), Query Frame = -3
Query:  225 VTFRGPADTHLDSLVGQALFGDGDAAVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVEFXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATSGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 812
            VTFRGP+++HLDS+VGQALFGDG AAVIVG+DPD +VERPL+Q+VS SQTILPDS+GAIDGHLREVGLTFHLLKDVPGLISKNIE++L +AF PLGISDWNSIFW+AHPGGPAILDQVE          +ATR VLSEYGNMSSACVLFILDEMRK+S E+  AT+GEG+DWGVLFGFGPGLTVETVVLHSVPI A
Sbjct:  199 VTFRGPSESHLDSMVGQALFGDGAAAVIVGSDPDEAVERPLFQMVSASQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIERALGDAFTPLGISDWNSIFWVAHPGGPAILDQVEAKVGLDKERMRATRHVLSEYGNMSSACVLFILDEMRKRSAEDGHATTGEGMDWGVLFGFGPGLTVETVVLHSVPITA 394          
BLAST of CF834513 vs. ExPASy Swiss-Prot
Match: CHSY_ORYSI (Chalcone synthase OS=Oryza sativa subsp. indica GN=CHS PE=2 SV=1)

HSP 1 Score: 326.635 bits (836), Expect = 9.894e-89
Identity = 158/196 (80.61%), Postives = 176/196 (89.80%), Query Frame = -3
Query:  225 VTFRGPADTHLDSLVGQALFGDGDAAVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVEFXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATSGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 812
            VTFRGP+++HLDS+VGQALFGDG AAVIVG+DPD +VERPL+Q+VS SQTILPDS+GAIDGHLREVGLTFHLLKDVPGLISKNIE++L +AF PLGISDWNSIFW+AHPGGPAILDQVE          +ATR VLSEYGNMSSACVLFILDEMRK+S E+  AT+GEG+DWGVLFGFGPGLTVETVVLHSVPI A
Sbjct:  199 VTFRGPSESHLDSMVGQALFGDGAAAVIVGSDPDEAVERPLFQMVSASQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIERALGDAFTPLGISDWNSIFWVAHPGGPAILDQVEAKVGLDKERMRATRHVLSEYGNMSSACVLFILDEMRKRSAEDGHATTGEGMDWGVLFGFGPGLTVETVVLHSVPITA 394          
The following BLAST results are available for this feature:
BLAST of CF834513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
CHS2_CITSI2.775e-9993.88Chalcone synthase 2 OS=Citrus sinensis GN=CHS2 PE=... [more]
CHS1_RUTGR5.070e-9386.73Chalcone synthase 1 OS=Ruta graveolens GN=CHS1 PE=... [more]
CHS2_RUTGR1.926e-9286.22Chalcone synthase 2 OS=Ruta graveolens GN=CHS2 PE=... [more]
CHSY_PETCR5.605e-9284.97Chalcone synthase OS=Petroselinum crispum GN=CHS P... [more]
CHS2_DAUCA5.605e-9284.97Chalcone synthase 2 OS=Daucus carota GN=CHS2 PE=2 ... [more]
CHS3_RUTGR1.249e-9185.71Chalcone synthase 3 OS=Ruta graveolens GN=CHS3 PE=... [more]
CHSY_BETVE6.197e-9184.02Chalcone synthase OS=Betula verrucosa GN=CHS PE=2 ... [more]
CHSY_VITVI4.441e-8981.63Chalcone synthase OS=Vitis vinifera GN=CHS PE=2 SV... [more]
CHSY_ORYSJ9.894e-8980.61Chalcone synthase OS=Oryza sativa subsp. japonica ... [more]
CHSY_ORYSI9.894e-8980.61Chalcone synthase OS=Oryza sativa subsp. indica GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_05K13_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05K13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834513 ID=CF834513; Name=CF834513; organism=Citrus sinensis; type=EST; length=814bp
TTTTTTTTTTTTTACAAATTTACTACTTTCTCAAATTCCCAAGACTTTAT
GCATAAACACAAAGCGTTGCCCAGGCTTTGGTGACGTCATAAGAGAAAAG
GCACGATGCCTTAAACTCAATTGACAAAACTAAACCTTCACACGATCAAC
CAATAACTCAACTGTGAAAGCATACAACATAAAGTTACTGAACTACTAAA
CATACTGATGGAGTTCTCACTTCAAGCTTTGATGGGGACACTGTGCAGCA
CAACGGTCTCGACGGTGAGCCCCGGCCCGAACCCGAACAGCACACCCCAA
TCAAGCCCTTCGCCGGAGGTGGCTTTCGCTTCCTCAACAGACTTCTTTCT
CATCTCGTCAAGGATGAACAAGACACAAGCGCTTGACATGTTACCGTACT
CACTCAACACTTGACGTGTGGCCTTCAGCTTCTCCCCTTTGAGGCCCAGT
TTAAACTCCACTTGGTCCAGAATTGCGGGCCCACCGGGGTGAGCGATCCA
GAATATCGAGTTCCAATCGCTGATGCCAAGCGGGGCGAACGCTTCAGACA
GGCTTTTCTCTATATTCTTTGAGATCAAGCCGGGGACGTCTTTAAGCAAA
TGGAAAGTGAGACCGACTTCGCGCAAGTGTCCGTCAATTGCACCGTCAGA
GTCAGGGAGGATCGTCTGCGAAGTCGACACGAGCTGATACAACGGACGCT
CGACCGACGTGTCAGGATCGGCACCCACGATCACAGCAGCATCACCATCA
CCGAACAAAGCCTGGCCCACAAGAGAATCAAGATGAGTATCGGCAGGGCC
GCGGAAAGTGACTG
back to top