CF834555

Overview
NameCF834555
Unique NameCF834555
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1076 contig Csv1_Contig1076:1..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834555 vs. ExPASy Swiss-Prot
Match: ISAM1_ARATH (Iron-sulfur assembly protein IscA-like 1, mitochondrial OS=Arabidopsis thaliana GN=At2g16710 PE=2 SV=2)

HSP 1 Score: 216.468 bits (550), Expect = 1.177e-55
Identity = 101/124 (81.45%), Postives = 116/124 (93.55%), Query Frame = 3
Query:   87 ASFLAQAAEKIGPAVRRQAVTLTDSAASRVRHLLQQRQRPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMTT 458
            +  LA AA ++GPA+R+Q +TLTD AASRV HLLQQRQ+P+L+LGVKARGCNGLSYTLNYADE+ KFDELVE+KGV+IL++PKALMHVIGTKMDFVDDKLRSEFVFINPNS+GQCGCGESFMTT
Sbjct:    4 SQILAAAAARVGPALRKQVLTLTDEAASRVHHLLQQRQKPFLRLGVKARGCNGLSYTLNYADEKGKFDELVEEKGVRILVEPKALMHVIGTKMDFVDDKLRSEFVFINPNSQGQCGCGESFMTT 127          
BLAST of CF834555 vs. ExPASy Swiss-Prot
Match: ISAM3_ARATH (Iron-sulfur assembly protein IscA-like 3, mitochondrial OS=Arabidopsis thaliana GN=At2g36260 PE=3 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 1.650e-41
Identity = 77/110 (70.00%), Postives = 99/110 (90.00%), Query Frame = 3
Query:  129 VRRQAVTLTDSAASRVRHLLQQRQRPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMTT 458
            +R+Q + L+D+AA+R+R LLQ +Q+P+L+L V+A+GCNGLSY LNYA E+ KFDE+VE+KGVKIL+DPKA+MHVIGT+MDFVDDKLRSEFVF+NPN+  +CGCGESF TT
Sbjct:    1 MRKQVLALSDTAAARIRQLLQHQQKPFLRLAVEAKGCNGLSYVLNYAQEKGKFDEVVEEKGVKILVDPKAVMHVIGTEMDFVDDKLRSEFVFVNPNAT-KCGCGESFTTT 109          
BLAST of CF834555 vs. ExPASy Swiss-Prot
Match: ISA1_YEAST (Iron sulfur assembly protein 1 OS=Saccharomyces cerevisiae GN=ISA1 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.951e-28
Identity = 58/107 (54.21%), Postives = 77/107 (71.96%), Query Frame = 3
Query:  132 RRQAVTLTDSAASRVRHLLQQRQRPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFM 452
            R+  +TL+  A   +R LL Q +   +++  + RGC+GL+Y L Y  E  KFDE+VE  GVKI+ID KAL  +IG++MD++DDKL S+FVF NPNSKG CGCGESFM
Sbjct:  143 RKALITLSPKAIKHLRALLAQPEPKLIRVSARNRGCSGLTYDLQYITEPGKFDEVVEQDGVKIVIDSKALFSIIGSEMDWIDDKLASKFVFKNPNSKGTCGCGESFM 249          
BLAST of CF834555 vs. ExPASy Swiss-Prot
Match: Y484_RICPR (Uncharacterized protein RP484 OS=Rickettsia prowazekii GN=RP484 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.946e-27
Identity = 51/107 (47.66%), Postives = 83/107 (77.57%), Query Frame = 3
Query:  135 RQAVTLTDSAASRVRHLLQQRQRPY--LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 449
            +  ++LTD+AA +V+ L+++R +P   +++G+K+ GC G +Y + YAD + +FDE+VE+KGV+ILIDPK LM+++G++MD+V+   +S+F F NPN K  CGCG+SF
Sbjct:    2 KNVISLTDAAAKQVKLLIEKRAKPTFGIRVGIKSGGCAGQTYYVEYADNKNQFDEVVEEKGVRILIDPKTLMYILGSEMDYVETNFKSQFTFTNPNEKANCGCGKSF 108          
BLAST of CF834555 vs. ExPASy Swiss-Prot
Match: ISCA1_DICDI (Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Dictyostelium discoideum GN=isca1 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.148e-26
Identity = 54/118 (45.76%), Postives = 86/118 (72.88%), Query Frame = 3
Query:  114 KIGPAVRRQAVTLTDSAASRVRHLLQQRQRPY---LKLGVKARGCNGLSYTLNYADERAKFDE-LVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMT 455
            K+G   ++   ++TDSA  RV+ ++  ++      L+LG+K RGC+G+SYTL++A ++ KFDE +V DK + I++D KAL+ VIGT+MD++++ ++ EF+FINPN+   CGCGESF T
Sbjct:    8 KLGKPSKKAIFSMTDSALKRVKEIMNDKKIDNCIGLRLGIKERGCSGMSYTLDFATQKNKFDETVVADKDINIIVDSKALLSVIGTEMDYIEEPIKKEFIFINPNATNTCGCGESFTT 125          
BLAST of CF834555 vs. ExPASy Swiss-Prot
Match: ISCA1_MACFA (Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Macaca fascicularis GN=ISCA1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.698e-26
Identity = 60/122 (49.18%), Postives = 84/122 (68.85%), Query Frame = 3
Query:   87 ASFLAQAAEKIGPAVRRQAVTLTDSAASRVRHLLQQR-QRPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 449
            A+  A +  K+ P   R A+TLT SA ++++ LL+ + +   +K+GV+ RGCNGLSYTL Y   +   DE V   GV++ I+ KA + ++GT+MD+V+DKL SEFVF NPN KG CGCGESF
Sbjct:    8 ATVRAVSKRKLQPT--RAALTLTPSAVNKIKQLLKDKPEHVGVKVGVRTRGCNGLSYTLEYTKTKGDSDEEVIQDGVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESF 127          
BLAST of CF834555 vs. ExPASy Swiss-Prot
Match: ISCA1_HUMAN (Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Homo sapiens GN=ISCA1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.698e-26
Identity = 60/122 (49.18%), Postives = 84/122 (68.85%), Query Frame = 3
Query:   87 ASFLAQAAEKIGPAVRRQAVTLTDSAASRVRHLLQQR-QRPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 449
            A+  A +  K+ P   R A+TLT SA ++++ LL+ + +   +K+GV+ RGCNGLSYTL Y   +   DE V   GV++ I+ KA + ++GT+MD+V+DKL SEFVF NPN KG CGCGESF
Sbjct:    8 ATVRAVSKRKLQPT--RAALTLTPSAVNKIKQLLKDKPEHVGVKVGVRTRGCNGLSYTLEYTKTKGDSDEEVIQDGVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESF 127          
BLAST of CF834555 vs. ExPASy Swiss-Prot
Match: ISCA1_CHICK (Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Gallus gallus GN=ISCA1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.698e-26
Identity = 60/124 (48.39%), Postives = 81/124 (65.32%), Query Frame = 3
Query:   81 SMASFLAQAAEKIGPAVRRQAVTLTDSAASRVRHLLQ-QRQRPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 449
            S+     +A  K      R A+TLT SA  +++ LL+ Q +   +K+GV+ RGCNGLSYTL Y   +   DE V   GV++ I+ KA + ++GT+MD+V+DKL SEFVF NPN KG CGCGESF
Sbjct:    4 SVVRATVRAVSKRKIQATRAALTLTPSAVQKIKQLLKDQPEHVGVKVGVRTRGCNGLSYTLEYTKSKGDSDEEVVQDGVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESF 127          
BLAST of CF834555 vs. ExPASy Swiss-Prot
Match: ISCA1_BOVIN (Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Bos taurus GN=ISCA1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.698e-26
Identity = 60/122 (49.18%), Postives = 84/122 (68.85%), Query Frame = 3
Query:   87 ASFLAQAAEKIGPAVRRQAVTLTDSAASRVRHLLQQR-QRPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 449
            A+  A +  K+ P   R A+TLT SA ++++ LL+ + +   +K+GV+ RGCNGLSYTL Y   +   DE V   GV++ I+ KA + ++GT+MD+V+DKL SEFVF NPN KG CGCGESF
Sbjct:    8 ATVRAVSKRKLQPT--RAALTLTPSAVNKIKQLLKDKPEHVGVKVGVRTRGCNGLSYTLEYTKTKGDSDEEVIQDGVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESF 127          
BLAST of CF834555 vs. ExPASy Swiss-Prot
Match: ISCA1_RAT (Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Rattus norvegicus GN=Isca1 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.442e-26
Identity = 60/122 (49.18%), Postives = 84/122 (68.85%), Query Frame = 3
Query:   87 ASFLAQAAEKIGPAVRRQAVTLTDSAASRVRHLLQQR-QRPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 449
            A+  A +  K+ P   R A+TLT SA ++++ LL+ + +   LK+GV+ RGCNGLSY+L Y   +   DE V   GV++ I+ KA + ++GT+MD+V+DKL SEFVF NPN KG CGCGESF
Sbjct:    8 ATVRAVSKRKLQPT--RAALTLTPSAVNKIKQLLKDKPEHVGLKVGVRTRGCNGLSYSLEYTKTKGDADEEVIQDGVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESF 127          
The following BLAST results are available for this feature:
BLAST of CF834555 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
ISAM1_ARATH1.177e-5581.45Iron-sulfur assembly protein IscA-like 1, mitochon... [more]
ISAM3_ARATH1.650e-4170.00Iron-sulfur assembly protein IscA-like 3, mitochon... [more]
ISA1_YEAST7.951e-2854.21Iron sulfur assembly protein 1 OS=Saccharomyces ce... [more]
Y484_RICPR3.946e-2747.66Uncharacterized protein RP484 OS=Rickettsia prowaz... [more]
ISCA1_DICDI1.148e-2645.76Iron-sulfur cluster assembly 1 homolog, mitochondr... [more]
ISCA1_MACFA5.698e-2649.18Iron-sulfur cluster assembly 1 homolog, mitochondr... [more]
ISCA1_HUMAN5.698e-2649.18Iron-sulfur cluster assembly 1 homolog, mitochondr... [more]
ISCA1_CHICK5.698e-2648.39Iron-sulfur cluster assembly 1 homolog, mitochondr... [more]
ISCA1_BOVIN5.698e-2649.18Iron-sulfur cluster assembly 1 homolog, mitochondr... [more]
ISCA1_RAT7.442e-2649.18Iron-sulfur cluster assembly 1 homolog, mitochondr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05L18_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05L18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834555 ID=CF834555; Name=CF834555; organism=Citrus sinensis; type=EST; length=723bp
TTTTCCCCTTCCTTTAATTTTCTTTTTTTGAAAAAAAAGGAAATTAAATA
GACTTAGATTGCGTGACATTTTGGATATGATCGATGGCTTCGTTTCTGGC
GCAAGCCGCTGAGAAAATCGGACCGGCCGTTAGGCGGCAGGCCGTGACGT
TAACAGACTCCGCCGCATCTAGAGTACGTCACCTCCTCCAGCAACGCCAG
CGACCTTACCTCAAGCTCGGCGTCAAGGCCCGTGGCTGCAACGGCTTGTC
CTACACCCTCAATTACGCCGATGAGAGAGCTAAGTTTGATGAGTTGGTTG
AGGATAAGGGTGTGAAGATACTGATTGATCCAAAAGCTCTCATGCACGTT
ATTGGGACCAAAATGGATTTTGTAGATGATAAGCTCAGGTCTGAGTTTGT
ATTCATTAATCCAAACTCTAAAGGGCAGTGTGGTTGTGGTGAATCCTTTA
TGACAACCAGCAGTAGTGGAGCGTCTAAGCAGGGTGGAAGCTAGGGATTC
TTACAAACTAATAGTACATGAAGAATGAACGTAGATGATTCTTTTCCCTG
GCTGGCCAAGCATTACGCACTTGTCTGAAGGTTGTGAATGAAAGGTAGAC
ATCCTCGGTGAGCTTTAATGGCAGTTGGAGCAACAGGGGCTTTACTAATT
CACGTCCTGGGAATCATTGCTGTTTTGCCGTCTACAAACAAATTTGTAAA
ACTATTGTAGCATTTTTTTTCCT
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