CF834571

Overview
NameCF834571
Unique NameCF834571
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length426
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6249 contig Csv1_Contig6249:154..579. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834571 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 1.282e-58
Identity = 104/140 (74.29%), Postives = 119/140 (85.00%), Query Frame = 2
Query:    2 AFPETKKTNNDITSIASNGGGVQCMKGWPPTGLKKIKTLSCLPPLADEALLKEINYLIRSGWIPCLEFKLEKGWVYREHHKSP*YDDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFDRIIGFDNKRQVQGISFI 421
            AFP TKK NND +S+ SNGG VQCMK WPP GLKK +TLS LPPL+DEAL KEI+YLIR+ WIPCLEF+LE G+VYREHH SP Y DGRYWTMWKLPM+GCTD+ QV+ EVGE +KEYP++F R+IGFDN RQVQ ISFI
Sbjct:   34 AFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFI 173          
BLAST of CF834571 vs. ExPASy Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 4.559e-56
Identity = 100/140 (71.43%), Postives = 116/140 (82.86%), Query Frame = 2
Query:    5 FPETKKTNNDITSIASNGGGVQCMKGWPPTGLKKIKTLSCLPPLADEALLKEINYLIRSGWIPCLEFKLEKGWVYREHHKSP*YDDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFDRIIGFDNKRQVQGISFIA 424
            FP TKKTNNDITSIASNGG V CM+ WPP G KK +TLS LPPL +E L KE+ YLIR GWIPCLEF+LEKG+VYRE+H+SP Y DGRYWTMW+LP++G TD++QVL E+ + + EYP SF RIIGFDN RQVQ ISFIA
Sbjct:   35 FPVTKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQLAKEVEYLIRKGWIPCLEFELEKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKELADCKAEYPDSFIRIIGFDNVRQVQCISFIA 174          
BLAST of CF834571 vs. ExPASy Swiss-Prot
Match: RBS_BETVE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 1.016e-55
Identity = 101/141 (71.63%), Postives = 118/141 (83.69%), Query Frame = 2
Query:    2 AFPETKKTNNDITSIASNGGGVQCMKGWPPTGLKKIKTLSCLPPLADEALLKEINYLIRSGWIPCLEFKLEKGWVYREHHKSP*YDDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFDRIIGFDNKRQVQGISFIA 424
            AFP T+KTNNDITSIASNGG VQCM+ WPP GLKK +TLS LPPL+ E L KE++YL+R   IPCLEF+LE G+VYREH++SP Y DGRYWTMWKLPM+GC D++QVL E+ E +K YP +F RIIGFDNKRQVQ ISFIA
Sbjct:   36 AFPVTQKTNNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQIISFIA 176          
BLAST of CF834571 vs. ExPASy Swiss-Prot
Match: RBS_PYRPY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 2.262e-55
Identity = 100/141 (70.92%), Postives = 119/141 (84.40%), Query Frame = 2
Query:    2 AFPETKKTNNDITSIASNGGGVQCMKGWPPTGLKKIKTLSCLPPLADEALLKEINYLIRSGWIPCLEFKLEKGWVYREHHKSP*YDDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFDRIIGFDNKRQVQGISFIA 424
            AFP T+K+N DITSIASNGG VQCM+ WPP GLKK +TLS LPPL+ E+L KE++YL+R  W+PCLEF+LE G+VYRE+H+SP Y DGRYWTMWKLPM+GCTD++QVL E+ E +K YP SF RIIGFDN RQVQ ISFIA
Sbjct:   38 AFPVTRKSN-DITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIA 177          
BLAST of CF834571 vs. ExPASy Swiss-Prot
Match: RBS_FAGCR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 8.597e-55
Identity = 101/141 (71.63%), Postives = 116/141 (82.27%), Query Frame = 2
Query:    2 AFPETKKTNNDITSIASNGGGVQCMKGWPPTGLKKIKTLSCLPPLADEALLKEINYLIRSGWIPCLEFKLEKGWVYREHHKSP*YDDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFDRIIGFDNKRQVQGISFIA 424
            AFP T+K+NNDITS+ASNGG VQCMK WPP GL+K +TLS LPPL+ E+L K+I YLI  GWIPCLEF+LE  +VYRE+++SP Y DGRYW MWKLPM+GCTDATQVL E+ E  K YP S  RIIGFDNKRQVQ ISFIA
Sbjct:   36 AFPATRKSNNDITSLASNGGRVQCMKVWPPLGLQKFETLSYLPPLSIESLAKQIEYLILKGWIPCLEFELEHPFVYRENNRSPGYYDGRYWVMWKLPMFGCTDATQVLAELQEASKTYPTSHIRIIGFDNKRQVQCISFIA 176          
BLAST of CF834571 vs. ExPASy Swiss-Prot
Match: RBS_CAPAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Capsicum annuum GN=RBCS PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 1.466e-54
Identity = 99/141 (70.21%), Postives = 115/141 (81.56%), Query Frame = 2
Query:    2 AFPETKKTNNDITSIASNGGGVQCMKGWPPTGLKKIKTLSCLPPLADEALLKEINYLIRSGWIPCLEFKLEKGWVYREHHKSP*YDDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFDRIIGFDNKRQVQGISFIA 424
            +FP T+K + DITSIASNGG V+CM  WPP   KK +TLS LP L+DE LLKEI YL++ GW+PCLEF+ E G+VYREHH+SP Y DGRYWTMWKLPM+GCTDATQVLNEV E +K YP ++ RIIGFDN RQVQ ISFIA
Sbjct:   34 SFPVTRKQDLDITSIASNGGRVECMLVWPPINKKKYETLSYLPDLSDEQLLKEIEYLLQKGWVPCLEFETEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDATQVLNEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIA 174          
BLAST of CF834571 vs. ExPASy Swiss-Prot
Match: RBS3_AMAHP (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 1.466e-54
Identity = 98/141 (69.50%), Postives = 116/141 (82.27%), Query Frame = 2
Query:    2 AFPETKKTNNDITSIASNGGGVQCMKGWPPTGLKKIKTLSCLPPLADEALLKEINYLIRSGWIPCLEFKLEKGWVYREHHKSP*YDDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFDRIIGFDNKRQVQGISFIA 424
            +FP T+K+N DITSIASNGG VQCM+ WPP G KK +TLS LPPL+D  LL ++ YL+ +GWIPC+EF+LE  +VYRE+H+SP Y DGRYWTMWKLPMYGCTD  QVLNEV E +K YP +F RIIGFDNKRQVQ +SFIA
Sbjct:   35 SFPVTRKSN-DITSIASNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNNGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSFIA 174          
BLAST of CF834571 vs. ExPASy Swiss-Prot
Match: RBS3_SOLTU (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Solanum tuberosum GN=RBCS-3 PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 1.915e-54
Identity = 99/142 (69.72%), Postives = 118/142 (83.10%), Query Frame = 2
Query:    2 AFPETKKTNN-DITSIASNGGGVQCMKGWPPTGLKKIKTLSCLPPLADEALLKEINYLIRSGWIPCLEFKLEKGWVYREHHKSP*YDDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFDRIIGFDNKRQVQGISFIA 424
            +FP TKK NN DITS+ASNGG V+CM+ WPP  +KK +TLS LP L+DE LLKE+ YL+++GW+PCLEF+ E G+VYRE+HKSP Y DGRYWTMWKLPM+GCTDATQVL EV E +K YP ++ RIIGFDN RQVQ ISFIA
Sbjct:   34 SFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIA 175          
BLAST of CF834571 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 2.501e-54
Identity = 99/141 (70.21%), Postives = 118/141 (83.69%), Query Frame = 2
Query:    2 AFPETKKTNNDITSIASNGGGVQCMKGWPPTGLKKIKTLSCLPPLADEALLKEINYLIRSGWIPCLEFKLEKGWVYREHHKSP*YDDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFDRIIGFDNKRQVQGISFIA 424
            A P T+K+N DITSIASNGG VQCM+ WPP GLKK +TLS LPPL+ E+L KE++YL+R  W+PCLEF+LE G+VYRE+H+SP Y DGRYWTMWKLPM+GCTD++QVL E+ E +K YP SF RIIGFDN RQVQ ISFIA
Sbjct:   38 ASPVTRKSN-DITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIA 177          
BLAST of CF834571 vs. ExPASy Swiss-Prot
Match: RBS2_AMAHP (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 2.501e-54
Identity = 98/141 (69.50%), Postives = 115/141 (81.56%), Query Frame = 2
Query:    2 AFPETKKTNNDITSIASNGGGVQCMKGWPPTGLKKIKTLSCLPPLADEALLKEINYLIRSGWIPCLEFKLEKGWVYREHHKSP*YDDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFDRIIGFDNKRQVQGISFIA 424
            +FP T+K+N DITSIASNGG VQCM+ WPP G KK +TLS LPPL+D  LL ++ YL+  GWIPC+EF+LE  +VYRE+H+SP Y DGRYWTMWKLPMYGCTD  QVLNEV E +K YP +F RIIGFDNKRQVQ +SFIA
Sbjct:   38 SFPVTRKSN-DITSIASNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPTAFIRIIGFDNKRQVQCVSFIA 177          
The following BLAST results are available for this feature:
BLAST of CF834571 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 126
Match NameE-valueIdentityDescription
RBS_LACSA1.282e-5874.29Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MEDSA4.559e-5671.43Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_BETVE1.016e-5571.63Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_PYRPY2.262e-5570.92Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_FAGCR8.597e-5571.63Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_CAPAN1.466e-5470.21Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_AMAHP1.466e-5469.50Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS3_SOLTU1.915e-5469.72Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS_MALSP2.501e-5470.21Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_AMAHP2.501e-5469.50Ribulose bisphosphate carboxylase small chain 2, c... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_05M04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05M04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834571 ID=CF834571; Name=CF834571; organism=Citrus sinensis; type=EST; length=426bp
TGCTTTCCCAGAAACCAAGAAGACCAACAATGACATTACTTCCATTGCGA
GCAACGGCGGAGGAGTCCAATGCATGAAGGGGTGGCCACCAACTGGCTTG
AAGAAGATCAAGACTCTCTCATGCCTCCCGCCACTGGCCGATGAAGCTTT
GCTCAAGGAAATCAATTACCTTATCCGCTCCGGCTGGATTCCCTGCTTGG
AATTCAAGTTGGAGAAAGGATGGGTGTACCGTGAGCACCACAAGTCACCA
TGATACGACGATGGACGCTACTGGACAATGTGGAAGCTGCCCATGTATGG
GTGCACAGATGCAACCCAGGTGTTGAATGAGGTTGGGGAGGTCCAAAAGG
AATACCCACATTCATTCGACCGAATTATCGGATTTGACAACAAGCGTCAA
GTGCAGGGCATCAGTTTCATTGCTGC
back to top