CF834571
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF834571 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1) HSP 1 Score: 224.557 bits (571), Expect = 1.282e-58 Identity = 104/140 (74.29%), Postives = 119/140 (85.00%), Query Frame = 2 Query: 2 AFPETKKTNNDITSIASNGGGVQCMKGWPPTGLKKIKTLSCLPPLADEALLKEINYLIRSGWIPCLEFKLEKGWVYREHHKSP*YDDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFDRIIGFDNKRQVQGISFI 421 AFP TKK NND +S+ SNGG VQCMK WPP GLKK +TLS LPPL+DEAL KEI+YLIR+ WIPCLEF+LE G+VYREHH SP Y DGRYWTMWKLPM+GCTD+ QV+ EVGE +KEYP++F R+IGFDN RQVQ ISFI Sbjct: 34 AFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFI 173
BLAST of CF834571 vs. ExPASy Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1) HSP 1 Score: 216.083 bits (549), Expect = 4.559e-56 Identity = 100/140 (71.43%), Postives = 116/140 (82.86%), Query Frame = 2 Query: 5 FPETKKTNNDITSIASNGGGVQCMKGWPPTGLKKIKTLSCLPPLADEALLKEINYLIRSGWIPCLEFKLEKGWVYREHHKSP*YDDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFDRIIGFDNKRQVQGISFIA 424 FP TKKTNNDITSIASNGG V CM+ WPP G KK +TLS LPPL +E L KE+ YLIR GWIPCLEF+LEKG+VYRE+H+SP Y DGRYWTMW+LP++G TD++QVL E+ + + EYP SF RIIGFDN RQVQ ISFIA Sbjct: 35 FPVTKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQLAKEVEYLIRKGWIPCLEFELEKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKELADCKAEYPDSFIRIIGFDNVRQVQCISFIA 174
BLAST of CF834571 vs. ExPASy Swiss-Prot
Match: RBS_BETVE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1) HSP 1 Score: 214.927 bits (546), Expect = 1.016e-55 Identity = 101/141 (71.63%), Postives = 118/141 (83.69%), Query Frame = 2 Query: 2 AFPETKKTNNDITSIASNGGGVQCMKGWPPTGLKKIKTLSCLPPLADEALLKEINYLIRSGWIPCLEFKLEKGWVYREHHKSP*YDDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFDRIIGFDNKRQVQGISFIA 424 AFP T+KTNNDITSIASNGG VQCM+ WPP GLKK +TLS LPPL+ E L KE++YL+R IPCLEF+LE G+VYREH++SP Y DGRYWTMWKLPM+GC D++QVL E+ E +K YP +F RIIGFDNKRQVQ ISFIA Sbjct: 36 AFPVTQKTNNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQIISFIA 176
BLAST of CF834571 vs. ExPASy Swiss-Prot
Match: RBS_PYRPY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1) HSP 1 Score: 213.772 bits (543), Expect = 2.262e-55 Identity = 100/141 (70.92%), Postives = 119/141 (84.40%), Query Frame = 2 Query: 2 AFPETKKTNNDITSIASNGGGVQCMKGWPPTGLKKIKTLSCLPPLADEALLKEINYLIRSGWIPCLEFKLEKGWVYREHHKSP*YDDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFDRIIGFDNKRQVQGISFIA 424 AFP T+K+N DITSIASNGG VQCM+ WPP GLKK +TLS LPPL+ E+L KE++YL+R W+PCLEF+LE G+VYRE+H+SP Y DGRYWTMWKLPM+GCTD++QVL E+ E +K YP SF RIIGFDN RQVQ ISFIA Sbjct: 38 AFPVTRKSN-DITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIA 177
BLAST of CF834571 vs. ExPASy Swiss-Prot
Match: RBS_FAGCR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1) HSP 1 Score: 211.846 bits (538), Expect = 8.597e-55 Identity = 101/141 (71.63%), Postives = 116/141 (82.27%), Query Frame = 2 Query: 2 AFPETKKTNNDITSIASNGGGVQCMKGWPPTGLKKIKTLSCLPPLADEALLKEINYLIRSGWIPCLEFKLEKGWVYREHHKSP*YDDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFDRIIGFDNKRQVQGISFIA 424 AFP T+K+NNDITS+ASNGG VQCMK WPP GL+K +TLS LPPL+ E+L K+I YLI GWIPCLEF+LE +VYRE+++SP Y DGRYW MWKLPM+GCTDATQVL E+ E K YP S RIIGFDNKRQVQ ISFIA Sbjct: 36 AFPATRKSNNDITSLASNGGRVQCMKVWPPLGLQKFETLSYLPPLSIESLAKQIEYLILKGWIPCLEFELEHPFVYRENNRSPGYYDGRYWVMWKLPMFGCTDATQVLAELQEASKTYPTSHIRIIGFDNKRQVQCISFIA 176
BLAST of CF834571 vs. ExPASy Swiss-Prot
Match: RBS_CAPAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Capsicum annuum GN=RBCS PE=2 SV=1) HSP 1 Score: 211.075 bits (536), Expect = 1.466e-54 Identity = 99/141 (70.21%), Postives = 115/141 (81.56%), Query Frame = 2 Query: 2 AFPETKKTNNDITSIASNGGGVQCMKGWPPTGLKKIKTLSCLPPLADEALLKEINYLIRSGWIPCLEFKLEKGWVYREHHKSP*YDDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFDRIIGFDNKRQVQGISFIA 424 +FP T+K + DITSIASNGG V+CM WPP KK +TLS LP L+DE LLKEI YL++ GW+PCLEF+ E G+VYREHH+SP Y DGRYWTMWKLPM+GCTDATQVLNEV E +K YP ++ RIIGFDN RQVQ ISFIA Sbjct: 34 SFPVTRKQDLDITSIASNGGRVECMLVWPPINKKKYETLSYLPDLSDEQLLKEIEYLLQKGWVPCLEFETEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDATQVLNEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIA 174
BLAST of CF834571 vs. ExPASy Swiss-Prot
Match: RBS3_AMAHP (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS3 PE=2 SV=1) HSP 1 Score: 211.075 bits (536), Expect = 1.466e-54 Identity = 98/141 (69.50%), Postives = 116/141 (82.27%), Query Frame = 2 Query: 2 AFPETKKTNNDITSIASNGGGVQCMKGWPPTGLKKIKTLSCLPPLADEALLKEINYLIRSGWIPCLEFKLEKGWVYREHHKSP*YDDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFDRIIGFDNKRQVQGISFIA 424 +FP T+K+N DITSIASNGG VQCM+ WPP G KK +TLS LPPL+D LL ++ YL+ +GWIPC+EF+LE +VYRE+H+SP Y DGRYWTMWKLPMYGCTD QVLNEV E +K YP +F RIIGFDNKRQVQ +SFIA Sbjct: 35 SFPVTRKSN-DITSIASNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNNGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSFIA 174
BLAST of CF834571 vs. ExPASy Swiss-Prot
Match: RBS3_SOLTU (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Solanum tuberosum GN=RBCS-3 PE=3 SV=1) HSP 1 Score: 210.69 bits (535), Expect = 1.915e-54 Identity = 99/142 (69.72%), Postives = 118/142 (83.10%), Query Frame = 2 Query: 2 AFPETKKTNN-DITSIASNGGGVQCMKGWPPTGLKKIKTLSCLPPLADEALLKEINYLIRSGWIPCLEFKLEKGWVYREHHKSP*YDDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFDRIIGFDNKRQVQGISFIA 424 +FP TKK NN DITS+ASNGG V+CM+ WPP +KK +TLS LP L+DE LLKE+ YL+++GW+PCLEF+ E G+VYRE+HKSP Y DGRYWTMWKLPM+GCTDATQVL EV E +K YP ++ RIIGFDN RQVQ ISFIA Sbjct: 34 SFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIA 175
BLAST of CF834571 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1) HSP 1 Score: 210.305 bits (534), Expect = 2.501e-54 Identity = 99/141 (70.21%), Postives = 118/141 (83.69%), Query Frame = 2 Query: 2 AFPETKKTNNDITSIASNGGGVQCMKGWPPTGLKKIKTLSCLPPLADEALLKEINYLIRSGWIPCLEFKLEKGWVYREHHKSP*YDDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFDRIIGFDNKRQVQGISFIA 424 A P T+K+N DITSIASNGG VQCM+ WPP GLKK +TLS LPPL+ E+L KE++YL+R W+PCLEF+LE G+VYRE+H+SP Y DGRYWTMWKLPM+GCTD++QVL E+ E +K YP SF RIIGFDN RQVQ ISFIA Sbjct: 38 ASPVTRKSN-DITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIA 177
BLAST of CF834571 vs. ExPASy Swiss-Prot
Match: RBS2_AMAHP (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS2 PE=2 SV=1) HSP 1 Score: 210.305 bits (534), Expect = 2.501e-54 Identity = 98/141 (69.50%), Postives = 115/141 (81.56%), Query Frame = 2 Query: 2 AFPETKKTNNDITSIASNGGGVQCMKGWPPTGLKKIKTLSCLPPLADEALLKEINYLIRSGWIPCLEFKLEKGWVYREHHKSP*YDDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFDRIIGFDNKRQVQGISFIA 424 +FP T+K+N DITSIASNGG VQCM+ WPP G KK +TLS LPPL+D LL ++ YL+ GWIPC+EF+LE +VYRE+H+SP Y DGRYWTMWKLPMYGCTD QVLNEV E +K YP +F RIIGFDNKRQVQ +SFIA Sbjct: 38 SFPVTRKSN-DITSIASNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPTAFIRIIGFDNKRQVQCVSFIA 177 The following BLAST results are available for this feature:
BLAST of CF834571 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 126
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834571 ID=CF834571; Name=CF834571; organism=Citrus sinensis; type=EST; length=426bpback to top |