CF834633

Overview
NameCF834633
Unique NameCF834633
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length536
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9274 contig Csv1_Contig9274:1181..1715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834633 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 4.892e-43
Identity = 84/123 (68.29%), Postives = 94/123 (76.42%), Query Frame = -1
Query:  168 ARVYDDEVRNRXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEGNADAIQSGNLYGKAAQQMNVPVPEGCTDPTAENFDPSARSDDGSCQY 536
            ARVYDDEVR              LVNS+E  P FEQP MT EKL+EYGNM+V EQENVKRVQLA+ YLS+AALG+ NADAI  G  YGK AQQ+N+PVPEGCTDP AENFDP+ARSDDG+C Y
Sbjct:  350 ARVYDDEVRKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVY 472          
BLAST of CF834633 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 1.574e-41
Identity = 82/125 (65.60%), Postives = 100/125 (80.00%), Query Frame = -1
Query:  165 ARVYDDEVRNRXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEGNADAIQSGNLYGKAAQQM-NVPVPEGCTDPTAENFDPSARSDDGSCQYT 536
            ARVYDDEVR              LVNS+E  P FEQP+MT+EKL+EYG M+V+EQENVKRVQLA++YLSEAALG+ N+DA+++G+ YG+ AQQ  N+PVPEGCTDP A+NFDP+ARSDDGSC YT
Sbjct:  341 ARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYGQGAQQAGNLPVPEGCTDPVAKNFDPTARSDDGSCLYT 465          
BLAST of CF834633 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 7.811e-41
Identity = 79/125 (63.20%), Postives = 95/125 (76.00%), Query Frame = -1
Query:  162 ARVYDDEVRNRXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEGNADAIQSGNLYGKAAQQMNVPVPEGCTDPTAENFDPSARSDDGSCQYTL 536
            ARVY DEVR              LVNSK+  P FEQP MT++KL+EYGNM+VQEQENVKRVQLAD+Y+S AALG+ N DAI  G  +GKAAQQ+++PV +GCTDP A+N+DP+ARSDDGSC Y L
Sbjct:  348 ARVYHDEVRKWVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSSAALGDANKDAIDRGTFFGKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTYNL 472          
BLAST of CF834633 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.332e-40
Identity = 79/124 (63.71%), Postives = 97/124 (78.23%), Query Frame = -1
Query:  165 ARVYDDEVRNRXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEGNADAIQSGNLYGKAAQQMNVPVPEGCTDPTAENFDPSARSDDGSCQYT 536
            ARVYDDEVR              LVNS++   TFEQP+MT+EKLLEYG+M+VQEQ+NVKRVQLAD Y+S+AALG+ N DA+++G+ YGK AQQ  +PVPEGCTD  A+N+DP+ARSDDGSC YT
Sbjct:  340 ARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYT 463          
BLAST of CF834633 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 8.636e-40
Identity = 84/125 (67.20%), Postives = 96/125 (76.80%), Query Frame = -1
Query:  168 ARVYDDEVRNRXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEGNADAIQSGNLY-GKAAQQM-NVPVPEGCTDPTAENFDPSARSDDGSCQY 536
            ARVY DEVR              LVNSKE  P+FEQP+MT++KLL YG M+VQEQENVKRVQLADKY+SEAALG+ N DAI+ G  Y G+AAQQ+ NVPVPEGCTDP A N+DP+ARSDDGSC Y
Sbjct:  350 ARVYHDEVRKWVSEVGVDTIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYMSEAALGDANNDAIKRGTFYGGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVY 474          
BLAST of CF834633 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.689e-27
Identity = 61/88 (69.32%), Postives = 68/88 (77.27%), Query Frame = -1
Query:  273 ARVYDDEVRNRXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEGNADAIQSGNLYG 536
            ARVYDDEVR              LVNSKE  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADKYLSEAALG+ N+DA+ +G  YG
Sbjct:  350 ARVYDDEVRKWITGVGVDSIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437          
BLAST of CF834633 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.161e-26
Identity = 58/89 (65.17%), Postives = 69/89 (77.53%), Query Frame = -1
Query:  270 ARVYDDEVRNRXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEGNADAIQSGNLYGK 536
            ARVYDDEVR              LVNS+E  PTF+QP+MT+EKL+EYG+M+VQEQENVKRVQLADKYLSEAALG+ N DA+++G  YGK
Sbjct:  337 ARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYGK 425          
BLAST of CF834633 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 4.600e-25
Identity = 56/87 (64.37%), Postives = 67/87 (77.01%), Query Frame = -1
Query:  276 ARVYDDEVRNRXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEGNADAIQSGNLY 536
            ARVYDDEVR              LVNSKE  PTF+QP+M+++KLL+YGNM+VQEQENVKRVQLADKYL+EAALG  N DAI+SG+ +
Sbjct:  352 ARVYDDEVRKWISGVGVDATGKKLVNSKEGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADKYLNEAALGNANEDAIKSGSFF 438          
BLAST of CF834633 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.600e-25
Identity = 57/87 (65.52%), Postives = 66/87 (75.86%), Query Frame = -1
Query:  276 ARVYDDEVRNRXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEGNADAIQSGNLY 536
            ARVYDDEVR              L+NS +  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADKYL EAALG+ NADAI +G+ +
Sbjct:  354 ARVYDDEVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLKEAALGDANADAINNGSFF 440          
BLAST of CF834633 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.025e-24
Identity = 56/84 (66.67%), Postives = 65/84 (77.38%), Query Frame = -1
Query:  285 ARVYDDEVRNRXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEGNADAIQSG 536
            ARVYDDEVR              LVNSKE  PTFEQP+MT++KLL+YGNM+V+EQENVKRVQLADKY+SEAALG+ N DAI+ G
Sbjct:  350 ARVYDDEVRKWVSEVGVDTIGKKLVNSKEGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYMSEAALGDANQDAIKRG 433          
The following BLAST results are available for this feature:
BLAST of CF834633 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RCA_ARATH4.892e-4368.29Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ1.574e-4165.60Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL7.811e-4163.20Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU1.332e-4063.71Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_LARTR8.636e-4067.20Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MALDO1.689e-2769.32Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU4.161e-2665.17Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU4.600e-2564.37Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_TOBAC4.600e-2565.52Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR1.025e-2466.67Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05N19_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05N19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834633 ID=CF834633; Name=CF834633; organism=Citrus sinensis; type=EST; length=536bp
TTTTTTTTTTTTTTTAGAGATCGAATAAAGAGTTGTGATATACACACCTT
ATTAAAGGATTCTTTCTAATTAACAAAGAAATGAAAATGCAACAATATTA
TTTGAATATCTCGCATCCTAAGCAAAGTGCGACACTTCTCAACCCTTACA
AACAAGGCCTAAAGCGTGTATTGGCAGCTTCCATCATCACTTCTTGCGGA
TGGATCAAAGTTTTCTGCAGTAGGATCAGTACATCCTTCAGGAACTGGAA
CATTCATTTGCTGGGCTGCTTTGCCATACAAATTTCCACTCTGAATAGCA
TCTGCATTACCTTCGCCAAGAGCGGCCTCACTCAAATACTTGTCAGCCAA
CTGAACTCTCTTCACATTCTCTTGCTCTTGCACAATCATGTTTCCGTACT
CGAGCAGCTTCTCCATTGTCATCCTTGGTTGCTCGAATGTTGGGGCTGCT
TCCTTTGAGTTCACAAGGCTCTTGCCAATGCTTCCAACACCAATACCAGA
GATCCTATTCCTCACCTCATCATCATAGACTCTGGC
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