CF834641

Overview
NameCF834641
Unique NameCF834641
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length819
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834641 vs. ExPASy Swiss-Prot
Match: VATH_ARATH (V-type proton ATPase subunit H OS=Arabidopsis thaliana GN=VHA-H PE=2 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 7.261e-71
Identity = 131/171 (76.61%), Postives = 144/171 (84.21%), Query Frame = -1
Query:  307 PKGNFAAQMIDLGLPQVVQSLKAQAWSXXXXXXXXXXXXXXLKDNIKRLSSFDKYKQEVLLGHLDWSPMHKDPLFWRDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGAKYASFLQA 819
            PKG F AQM+DLGLP ++ SLK QAWS              LKD IK+LSSFDKYKQEVLLGHLDW+PMHK+  FWR+N+T FEENDFQILRVLLTILDTSSDPR+LAVACFD+SQFIQYH AGRVIV DLKAKERVMKL+NHEN EVTK+A+LCIQRL LGAKYASFLQA
Sbjct:  271 PKGTFGAQMVDLGLPHIIHSLKTQAWSDEDLLDALNQLEEGLKDKIKKLSSFDKYKQEVLLGHLDWNPMHKETNFWRENVTCFEENDFQILRVLLTILDTSSDPRSLAVACFDISQFIQYHAAGRVIVADLKAKERVMKLINHENAEVTKNAILCIQRLLLGAKYASFLQA 441          
BLAST of CF834641 vs. ExPASy Swiss-Prot
Match: VATH_ORYSJ (Probable V-type proton ATPase subunit H OS=Oryza sativa subsp. japonica GN=Os07g0549700 PE=2 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 1.239e-70
Identity = 127/169 (75.15%), Postives = 146/169 (86.39%), Query Frame = -1
Query:  310 KGNFAAQMIDLGLPQVVQSLKAQAWSXXXXXXXXXXXXXXLKDNIKRLSSFDKYKQEVLLGHLDWSPMHKDPLFWRDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGAKYASFLQ 816
            KG FAAQMIDLGLP +VQ+LKAQAW+              LKDN+K+LSSF+KYKQ+VLLGHLDWSPMHKDP FWR+NI NFEENDFQILRVL+TI+DTS+D  ALAVAC+DLSQF+QYHP+GR++V DLKAK+RVMKLMNHEN EV K+ALLC+QRLFLGAKYASFLQ
Sbjct:  283 KGAFAAQMIDLGLPHIVQNLKAQAWTDEDLLDALNQLEIGLKDNLKKLSSFEKYKQQVLLGHLDWSPMHKDPSFWRENINNFEENDFQILRVLMTIIDTSADTTALAVACYDLSQFLQYHPSGRIVVADLKAKDRVMKLMNHENAEVRKNALLCVQRLFLGAKYASFLQ 451          
BLAST of CF834641 vs. ExPASy Swiss-Prot
Match: VATH_MOUSE (V-type proton ATPase subunit H OS=Mus musculus GN=Atp6v1h PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.752e-24
Identity = 51/157 (32.48%), Postives = 95/157 (60.51%), Query Frame = -1
Query:  337 FAAQMIDLGLPQVVQSLKAQAWSXXXXXXXXXXXXXXLKDNIKRLSSFDKYKQEVLLGHLDWSPMHKDPLFWRDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 807
            +A  MI   + + +++L+ Q +               L ++++ LSSFD+Y  E+  G L+WSP+HK   FWR+N     E ++++L++L  +L+ S DP+ LAVA  D+ ++++++P G+ ++  L  K+ VM  M+HE+ +V  +ALL +Q+L +
Sbjct:  305 YALAMIQCKVLKQLENLEQQKYDDEDISEDIKFLLEKLGESVQDLSSFDEYSSELKSGRLEWSPVHKSEKFWRENAVRLNEKNYELLKILTKLLEVSDDPQVLAVAAHDVGEYVRHYPRGKRVIEQLGGKQLVMNHMHHEDQQVRYNALLAVQKLMV 461          
BLAST of CF834641 vs. ExPASy Swiss-Prot
Match: VATH_HUMAN (V-type proton ATPase subunit H OS=Homo sapiens GN=ATP6V1H PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.752e-24
Identity = 51/157 (32.48%), Postives = 95/157 (60.51%), Query Frame = -1
Query:  337 FAAQMIDLGLPQVVQSLKAQAWSXXXXXXXXXXXXXXLKDNIKRLSSFDKYKQEVLLGHLDWSPMHKDPLFWRDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 807
            +A  MI   + + +++L+ Q +               L ++++ LSSFD+Y  E+  G L+WSP+HK   FWR+N     E ++++L++L  +L+ S DP+ LAVA  D+ ++++++P G+ ++  L  K+ VM  M+HE+ +V  +ALL +Q+L +
Sbjct:  305 YALAMIQCKVLKQLENLEQQKYDDEDISEDIKFLLEKLGESVQDLSSFDEYSSELKSGRLEWSPVHKSEKFWRENAVRLNEKNYELLKILTKLLEVSDDPQVLAVAAHDVGEYVRHYPRGKRVIEQLGGKQLVMNHMHHEDQQVRYNALLAVQKLMV 461          
BLAST of CF834641 vs. ExPASy Swiss-Prot
Match: VATH_BOVIN (V-type proton ATPase subunit H OS=Bos taurus GN=ATP6V1H PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.752e-24
Identity = 51/157 (32.48%), Postives = 95/157 (60.51%), Query Frame = -1
Query:  337 FAAQMIDLGLPQVVQSLKAQAWSXXXXXXXXXXXXXXLKDNIKRLSSFDKYKQEVLLGHLDWSPMHKDPLFWRDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 807
            +A  MI   + + +++L+ Q +               L ++++ LSSFD+Y  E+  G L+WSP+HK   FWR+N     E ++++L++L  +L+ S DP+ LAVA  D+ ++++++P G+ ++  L  K+ VM  M+HE+ +V  +ALL +Q+L +
Sbjct:  305 YALAMIQCKVLKQLENLEQQKYDDEDISEDIKFLLEKLGESVQDLSSFDEYSSELKSGRLEWSPVHKSEKFWRENAVRLNEKNYELLKILTKLLEVSDDPQVLAVAAHDVGEYVRHYPRGKRVIEQLGGKQLVMNHMHHEDQQVRYNALLAVQKLMV 461          
BLAST of CF834641 vs. ExPASy Swiss-Prot
Match: VATH_MANSE (V-type proton ATPase subunit H OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.989e-24
Identity = 49/117 (41.88%), Postives = 79/117 (67.52%), Query Frame = -1
Query:  337 NIKRLSSFDKYKQEVLLGHLDWSPMHKDPLFWRDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 687
            +++ LSSFD+Y  EV  G L+WSP+HK   FWR+N     E   ++LR L+ +L+ S DP  LAVAC+D+ ++++++P G+ I+  L  K+RVM L++H++  V   ALL +Q+L +
Sbjct:  332 SVQDLSSFDQYATEVKSGRLEWSPVHKSAKFWRENAARLNERGQELLRTLVHLLEKSHDPVVLAVACYDVGEYVRHYPRGKHIIEQLGGKQRVMYLLSHDDPNVRYEALLAVQKLMV 448          
BLAST of CF834641 vs. ExPASy Swiss-Prot
Match: VATH_PIG (V-type proton ATPase subunit H OS=Sus scrofa GN=ATP6V1H PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.904e-24
Identity = 50/157 (31.85%), Postives = 95/157 (60.51%), Query Frame = -1
Query:  337 FAAQMIDLGLPQVVQSLKAQAWSXXXXXXXXXXXXXXLKDNIKRLSSFDKYKQEVLLGHLDWSPMHKDPLFWRDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 807
            +A  +I   + + +++L+ Q +               L ++++ LSSFD+Y  E+  G L+WSP+HK   FWR+N     E ++++L++L  +L+ S DP+ LAVA  D+ ++++++P G+ ++  L  K+ VM  M+HE+ +V  +ALL +Q+L +
Sbjct:  305 YALALIQCKVLKQLENLEQQKYDDEDISEDIKFLLEKLGESVQDLSSFDEYSSELKSGRLEWSPVHKSEKFWRENAVRLNEKNYELLKILTKLLEVSDDPQVLAVAAHDVGEYVRHYPRGKRVIEQLGGKQLVMNHMHHEDQQVRYNALLAVQKLMV 461          
BLAST of CF834641 vs. ExPASy Swiss-Prot
Match: VATH_DROME (V-type proton ATPase subunit H OS=Drosophila melanogaster GN=VhaSFD PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 5.099e-24
Identity = 47/119 (39.50%), Postives = 82/119 (68.91%), Query Frame = -1
Query:  337 KDNIKRLSSFDKYKQEVLLGHLDWSPMHKDPLFWRDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 693
            +++++ LSSFD+Y  EV  G L+WSP+HK   FWR+N     E ++++LR+L+ +L+TS D   L+VACFD+ ++++++P G+ ++  L  K+ VM+ + HE+  V   ALL +Q+L +
Sbjct:  322 QNSVQDLSSFDEYATEVRSGRLEWSPVHKSAKFWRENAQRLNEKNYELLRILVHLLETSKDAIILSVACFDIGEYVRHYPRGKHVLEQLGGKQIVMQHLGHEDPNVRYEALLAVQKLMV 440          
BLAST of CF834641 vs. ExPASy Swiss-Prot
Match: VATH_DICDI (V-type proton ATPase subunit H OS=Dictyostelium discoideum GN=vatH PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.142e-22
Identity = 56/160 (35.00%), Postives = 90/160 (56.25%), Query Frame = -1
Query:  337 GNFAAQMIDLGLPQVVQSLKAQAWSXXXXXXXXXXXXXXLKDNIKRLSSFDKYKQEVLLGHLDWSPMHKDPLFWRDNITNFEENDFQILRVLLTILDTS-SDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 813
            G    +MID G  +++  L  + W               L  +I  +SSF+KYK E++ G L+W+P+HK   FW++NI+ FEEN++Q+++ L  IL TS S P  L++AC DL +F+++H  G+ I+T +  + R        N EV   AL  +Q++ L
Sbjct:  278 GKSNEEMIDNGFVRMLNILNIKKWGDDDIPADIEVLINGLAKDIDNMSSFNKYKTEIISGELEWTPVHKSERFWKENISKFEENNYQVIKHLHQILKTSQSTPLQLSIACHDLCEFVRHHSRGKAIMT-ITNQTRYHGYDVKSNEEVKNQALFALQKMML 436          
BLAST of CF834641 vs. ExPASy Swiss-Prot
Match: VATH2_CAEEL (Probable V-type proton ATPase subunit H 2 OS=Caenorhabditis elegans GN=vha-15 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.141e-22
Identity = 43/117 (36.75%), Postives = 76/117 (64.96%), Query Frame = -1
Query:  337 NIKRLSSFDKYKQEVLLGHLDWSPMHKDPLFWRDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 687
            ++  LSS+D+Y  EV  G L WSP+HK   FWR+N + F +  F+++++L+ +L++S DP  L VA  D+ ++++++P G+ +V   + K  VM+L+  E+  V   ALL +Q+L +
Sbjct:  332 SVHDLSSYDEYYSEVRSGRLQWSPVHKSEKFWRENASKFNDKQFEVVKILIKLLESSHDPLILCVASHDIGEYVRHYPRGKTVVEQYQGKAAVMRLLTAEDPNVRYHALLAVQKLMV 448          
The following BLAST results are available for this feature:
BLAST of CF834641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
VATH_ARATH7.261e-7176.61V-type proton ATPase subunit H OS=Arabidopsis thal... [more]
VATH_ORYSJ1.239e-7075.15Probable V-type proton ATPase subunit H OS=Oryza s... [more]
VATH_MOUSE1.752e-2432.48V-type proton ATPase subunit H OS=Mus musculus GN=... [more]
VATH_HUMAN1.752e-2432.48V-type proton ATPase subunit H OS=Homo sapiens GN=... [more]
VATH_BOVIN1.752e-2432.48V-type proton ATPase subunit H OS=Bos taurus GN=AT... [more]
VATH_MANSE2.989e-2441.88V-type proton ATPase subunit H OS=Manduca sexta PE... [more]
VATH_PIG3.904e-2431.85V-type proton ATPase subunit H OS=Sus scrofa GN=AT... [more]
VATH_DROME5.099e-2439.50V-type proton ATPase subunit H OS=Drosophila melan... [more]
VATH_DICDI2.142e-2235.00V-type proton ATPase subunit H OS=Dictyostelium di... [more]
VATH2_CAEEL8.141e-2236.75Probable V-type proton ATPase subunit H 2 OS=Caeno... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05N23_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05N23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834641 ID=CF834641; Name=CF834641; organism=Citrus sinensis; type=EST; length=819bp
TTTTTTTTTTTTTTTTTAAAAAACAGATAAATATATCATGCCCTCGAGTA
GTTTTCACATCAAAGGTCAATATAGATGGTATCAATTTATTCCTCATCTC
AAAAACAAAATAAATTTCCCAAATATGGTAAAAAATCAACTAATTCTTCA
CGGTACTTAAAAAAATCCAACAGACGAGTTCCCCTGATTCATAAATTCCT
CCAATGATTGATAAATAAATAAACAACCTAACCAGCCAAACTGGAATCAA
ATCATTACAAGCATTTCCTTTGTAAACAATACTGGACCCCATAGAAAGAG
AATTCAGGCCTGCAAAAAGCTCGCGTACTTTGCGCCTAGGAAAAGCCTTT
GGATGCAGAGTAAGGCGCTCTTGGTAACCTCGGTATTCTCATGGTTCATC
AATTTCATCACCCGTTCCTTAGCTTTGAGGTCCGTCACAATGACCCGCCC
AGCTGGATGGTACTGGATAAATTGTGACAGATCAAAGCAAGCGACAGCAA
GAGCTCGTGGATCACTGGATGTATCCAAAATTGTTAAGAGGACCCTTAAA
ATCTGGAAATCATTTTCTTCAAAGTTTGTGATATTATCACGCCAGAATAG
GGGATCTTTGTGCATAGGGGACCAGTCGAGATGGCCAAGGAGGACTTCTT
GCTTGTACTTGTCGAAAGAACTCAATCTCTTAATATTATCCTTCAAACCT
TCTTCCAGTTGATTCAGACCCTCTAGTAAATCCTCATCACTCCATGCTTG
TGCTTTTAAACTTTGAACAACTTGAGGTAGTCCAAGGTCTATCATCTGAG
CAGCAAAATTACCTTTGGG
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