CF834653

Overview
NameCF834653
Unique NameCF834653
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length298
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3PC_CRAPL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Craterostigma plantagineum GN=GAPC PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.592e-23
Identity = 52/83 (62.65%), Postives = 64/83 (77.11%), Query Frame = -1
Query:   50 AKGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMA 298
            AK AS +++KAAIK  SEG +KGILGYT+E VV +DFVGDS SSIFDA+ GI  S  F K+V+W+  EWGY +RV D+I HMA
Sbjct:  252 AKEASYDEIKAAIKEESEGKLKGILGYTEEDVVSSDFVGDSRSSIFDAKAGIALSKKFVKIVAWYDNEWGYSSRVVDLIRHMA 334          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3PC_PETCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petroselinum crispum GN=GAPC PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.122e-22
Identity = 51/84 (60.71%), Postives = 65/84 (77.38%), Query Frame = -1
Query:   44 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMALV 295
            K A+ +++KAAIK+ SE S+KGILGYT++ VV  DFVGDS SSIFDA+ GI  + +F K+VSW+  EWGY NRV D+I HMA V
Sbjct:  252 KAATYDEIKAAIKHESETSLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALNGNFVKVVSWYDNEWGYSNRVIDLIRHMASV 335          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3PC_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 1 OS=Zea mays GN=GAPC1 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 1.914e-22
Identity = 51/81 (62.96%), Postives = 61/81 (75.31%), Query Frame = -1
Query:   53 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHM 295
            KGAS ED+K AIK ASEG +KGI+GY +E +V  DF+GDS SSIFDA+ GI  +  F KLVSW+  EWGY NRV D+I HM
Sbjct:  253 KGASYEDIKKAIKAASEGPLKGIMGYVEEDLVSTDFLGDSRSSIFDAKAGIALNDHFVKLVSWYDNEWGYSNRVVDLIRHM 333          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P_RHIMI (Glyceraldehyde-3-phosphate dehydrogenase OS=Rhizomucor miehei GN=GPD PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.500e-22
Identity = 51/84 (60.71%), Postives = 65/84 (77.38%), Query Frame = -1
Query:   44 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMALV 295
            K AS ED+KAAIK ASEGS+KGILGYT++ VV  DF+GDS SSIFDA+ GI  + +F KL+SW+  E+GY  RV D++ H+A V
Sbjct:  249 KSASYEDIKAAIKKASEGSLKGILGYTEDEVVSTDFIGDSHSSIFDAKAGISLNPNFVKLISWYDNEYGYSTRVVDLLVHIAKV 332          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P_PHYIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Phytophthora infestans GN=GPDA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.500e-22
Identity = 51/79 (64.56%), Postives = 62/79 (78.48%), Query Frame = -1
Query:   53 AS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHM 289
            AS +++KAAIK ASE  MKGILGYT++ VV +DF+GDS SSIFDAE GI  +  F KLVSW+  EWGY +RV D+IEHM
Sbjct:  250 ASYDEIKAAIKSASENEMKGILGYTEKAVVSSDFIGDSHSSIFDAEAGIALTDDFVKLVSWYDNEWGYSSRVLDLIEHM 328          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3PX_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.500e-22
Identity = 51/82 (62.20%), Postives = 61/82 (74.39%), Query Frame = -1
Query:   50 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMA 295
            K AS +D+K AIK ASEG +KGI+GY +E +V  DFVGDS SSIFDA+ GI  +  F KLVSW+  EWGY NRV D+I HMA
Sbjct:  253 KAASYDDIKKAIKAASEGKLKGIMGYVEEDLVSTDFVGDSRSSIFDAKAGIALNDHFVKLVSWYDNEWGYSNRVVDLIRHMA 334          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3PC_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Nicotiana tabacum GN=GAPC PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.500e-22
Identity = 53/84 (63.10%), Postives = 64/84 (76.19%), Query Frame = -1
Query:   44 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMALV 295
            K AS +D+KAAIK  SEG +KGILG+T++ VV  DFVGDS SSIFDA+ GI  S +F KLVSW+  EWGY +RV D+I HMA V
Sbjct:  242 KEASYDDIKAAIKEESEGKLKGILGFTEDDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLICHMASV 325          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3PC_PINSY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pinus sylvestris GN=GAPC PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.264e-22
Identity = 50/82 (60.98%), Postives = 64/82 (78.05%), Query Frame = -1
Query:   50 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMA 295
            K A+ +++KAAIK  SEG++KGILGYT++ VV  DF+GDS SSIFDA+ GI  S +F KLVSW+  EWGY +RV D+I HMA
Sbjct:  256 KSATYDEIKAAIKAESEGNLKGILGYTEDAVVSTDFIGDSRSSIFDAQAGIALSDNFVKLVSWYDNEWGYSSRVVDLIVHMA 337          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3PD_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 2 OS=Zea mays GN=GAPC2 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.273e-22
Identity = 50/81 (61.73%), Postives = 60/81 (74.07%), Query Frame = -1
Query:   53 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHM 295
            KGAS E++K AIK ASEG +KGI+GY +E +V  DF GDS SSIFDA+ GI  +  F KLVSW+  EWGY NRV D+I HM
Sbjct:  253 KGASYEEIKKAIKAASEGPLKGIMGYVEEDLVSTDFTGDSRSSIFDAKAGIALNDHFIKLVSWYDNEWGYSNRVVDLIRHM 333          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3PC_GINBI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ginkgo biloba PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.499e-22
Identity = 50/82 (60.98%), Postives = 63/82 (76.83%), Query Frame = -1
Query:   50 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMA 295
            K AS +++KAAIK  SEG +KGILGYT++ VV  DF+GD+ SSIFDA+ GI  S +F KLVSW+  EWGY +RV D+I HMA
Sbjct:  256 KPASYDEIKAAIKEESEGKLKGILGYTEDDVVSTDFIGDNRSSIFDAKAGIALSDNFVKLVSWYDNEWGYSSRVIDLIVHMA 337          
The following BLAST results are available for this feature:
BLAST of CF834653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 180
Match NameE-valueIdentityDescription
G3PC_CRAPL8.592e-2362.65Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PETCR1.122e-2260.71Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MAIZE1.914e-2262.96Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_RHIMI2.500e-2260.71Glyceraldehyde-3-phosphate dehydrogenase OS=Rhizom... [more]
G3P_PHYIN2.500e-2264.56Glyceraldehyde-3-phosphate dehydrogenase OS=Phytop... [more]
G3PX_HORVU2.500e-2262.20Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_TOBAC2.500e-2263.10Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PINSY4.264e-2260.98Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PD_MAIZE7.273e-2261.73Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_GINBI9.499e-2260.98Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05O08_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05O08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834653 ID=CF834653; Name=CF834653; organism=Citrus sinensis; type=EST; length=298bp
TGCACCCACCCCAAACCGGTTTTACTGTTTAGTTGGGGGCCCCTACCAAT
GCCATGTGCTCAATGATGTCCCACACTCGATTGATGTATCCCCACTCGAA
GCCGAACCATGACACAAGCTTCCTGAAGGATGCACTCGATCCAATCCCAA
CCTCCGCATCAAATATACTTGACCCCGAGTCTCCAACAAAGTCATTAAAT
ACAACATGCTCATCTGTGTATCCAAGAATGCCTTTCATCGAACCCTCCGA
TGCATACTTTATGGCGGCTTTGACATCTTCCTAGGAAGCACCCTTTGC
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