CF834657

Overview
NameCF834657
Unique NameCF834657
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length534
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834657_ssr479 microsatellite CF834657_ssr479:479..493. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig76 contig Csv1_Contig76:60..593. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF834657 vs. ExPASy Swiss-Prot
Match: PRF1_SOLLC (36.4 kDa proline-rich protein OS=Solanum lycopersicum GN=TPRP-F1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.935e-17
Identity = 44/83 (53.01%), Postives = 51/83 (61.45%), Query Frame = -3 
Query:  191 IDTLKLGACVDVLGGLVHIGIGSSAKDACCPVLQGXXXXXXXXXXXXXXXXXXXXXXXXIPIALEVLI-DCGKHPPPGFQCPA 436
            ID LKLGACVDVLGGL+HIGIG SAK  CCP+L G                        +PIAL+VLI DCGK+PP  F+CP+
Sbjct:  263 IDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLGGLVDLDAAICLCTTIRLKLLNINIILPIALQVLIDDCGKYPPKDFKCPS 345
The following BLAST results are available for this feature:
BLAST of CF834657 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PRF1_SOLLC5.935e-1753.0136.4 kDa proline-rich protein OS=Solanum lycopersi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_05O11_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05O11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834657 ID=CF834657; Name=CF834657; organism=Citrus sinensis; type=EST; length=534bp
TTTTTTTTTTTTTTTTTGCTCCAAGATAATTGGTTTGATACCTTAAAAGG
AACAAAACATATATTAAGACAAACTTCGATATCATGAAGTACTTCCACTT
TATGCACTTACATGTCATTATCTTTGACAAAATCTCCAAAACAAACAAGT
CGCATTCATCAATTGCATGGCTGGAAAGCGTCACCAATTAGGCAGGACAC
TGGAATCCGGGCGGCGGATGCTTGCCGCAGTCAATAAGCACTTCAAGGGC
GATCGGTATAATAAGATTGATATTCAAAAGCTTAAGTTTAATGGTGGTGC
AAAGACATAATGCAGCATCCAAGTCCAGTAGCCCCTGCAGCACGGGGCAG
CAAGCGTCCTTTGCACTGCTGCCTATACCGATGTGTACTAGACCACCCAA
CACGTCGACGCATGCACCAAGCTTGAGAGTATCAATGGGACAAGTTGGTG
GCGGCGGCGGAGGACACCGTGTTCCACTTGGTGGTGGTGGTGGGCTAGGG
CTTGGGGTATACGGTGGTGATGGTACATATGGCG
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