CF834910

Overview
NameCF834910
Unique NameCF834910
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length367
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13717 contig Csv1_Contig13717:169..535. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF834910 vs. ExPASy Swiss-Prot
Match: U139_ARATH (UPF0139 membrane protein At5g07960 OS=Arabidopsis thaliana GN=At5g07960 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.721e-28
Identity = 58/68 (85.29%), Postives = 63/68 (92.65%), Query Frame = -3 
Query:  162 GFIAVIFGLAGVMFRYKLCSWLAIICCAQSLANMRNMETDLKQISMAMMFALMGLVTNYLGPARPGTK 365
            GFIAVI G++GVMFRYK+CSWLAII CAQSLANMRN+E DLKQISMAMMFA+MGLVTNYLGP RP TK
Sbjct:   39 GFIAVILGVSGVMFRYKICSWLAIIFCAQSLANMRNLENDLKQISMAMMFAIMGLVTNYLGPNRPATK 106
The following BLAST results are available for this feature:
BLAST of CF834910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
U139_ARATH6.721e-2885.29UPF0139 membrane protein At5g07960 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_06F10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834910 ID=CF834910; Name=CF834910; organism=Citrus sinensis; type=EST; length=367bp
CCCTCCATATTACAGCAAATTTTCACTATTATGTCATCAGACCACCAACT
TAACCCGAAAAGGACCTAACTGAACCATATATCGTCAACAAGGACAAAAG
AGAAACAAACCAAGACGTTCTAACAGATTATCTCAATTCCACAACCTAGG
ATCTCTCAACTCTTTGTGCCTGGTCGAGCAGGTCCCAAGTAGTTTGTTAC
CAAGCCCATTAGAGCAAACATCATAGCCATTGAAATCTGCTTAAGATCAG
TCTCCATGTTCCTCATGTTGGCCAGTGACTGGGCGCAGCATATGATTGCG
AGCCACGAGCATAGCTTGTACCTGAACATGACGCCGGCGAGACCGAAAAT
GACGGCGATGAAACCGG
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