CF834911

Overview
NameCF834911
Unique NameCF834911
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF834911 vs. ExPASy Swiss-Prot
Match: U139_ARATH (UPF0139 membrane protein At5g07960 OS=Arabidopsis thaliana GN=At5g07960 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 6.531e-42
Identity = 82/103 (79.61%), Postives = 91/103 (88.35%), Query Frame = 2 
Query:   17 THNNS---NDPRQPSSAKPYVSTAVAPEDLPVDYSGFIAVIFGLAGVMFRYKLCSWLAIICCAQSLANMRNMETDLKQISMAMMFALMGLVTNYLGPARPGTK 316
            +H N+   NDPRQPS+AKPY+   VAPEDLPVDYSGFIAVI G++GVMFRYK+CSWLAII CAQSLANMRN+E DLKQISMAMMFA+MGLVTNYLGP RP TK
Sbjct:    4 SHGNASSVNDPRQPSAAKPYIPRPVAPEDLPVDYSGFIAVILGVSGVMFRYKICSWLAIIFCAQSLANMRNLENDLKQISMAMMFAIMGLVTNYLGPNRPATK 106
The following BLAST results are available for this feature:
BLAST of CF834911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
U139_ARATH6.531e-4279.61UPF0139 membrane protein At5g07960 OS=Arabidopsis ... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06F10_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834911 ID=CF834911; Name=CF834911; organism=Citrus sinensis; type=EST; length=586bp
TCGAATCGACCCTTTAACACACAACAATTCGAACGATCCACGTCAGCCAT
CCTCGGCTAAGCCATACGTGTCAACGGCGGTGGCTCCCGAGGATCTACCC
GTCGACTACTCCGGTTTCATCGCCGTCATTTTCGGTCTCGCCGGCGTCAT
GTTCAGGTACAAGCTATGCTCGTGGCTCGCAATCATATGCTGCGCCCAGT
CACTGGCCAACATGAGGAACATGGAGACTGATCTTAAGCAGATTTCAATG
GCTATGATGTTTGCTCTAATGGGCTTGGTAACAAACTACTTGGGACCTGC
TCGACCAGGCACAAAGAGTTGAGAGATCCTAGGTTGTGGAATTGAGATAA
TCTGTTAGAACGTCTTGGTTTGTTTCTCTTTTGTCCTTGTTGACGATATA
TGGTTCAGTTAGGTCCTTTTCGGGTTAAGTTGGTGGTCTGATGACATAAT
AGTGAAAATTTGCTGTAATATGGAGGGAAACCAGAATAGCATACATGCTA
GGATTCTCTTTTACTTTTTAATTCTGCAATTTATCTGTATTTTGGGGCGG
CTCCTGTCCTTTTCCTTTTCAAAAAAAAAAAAAAAA
back to top