CF834961

Overview
NameCF834961
Unique NameCF834961
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834961 vs. ExPASy Swiss-Prot
Match: GLRX_SOLLC (Glutaredoxin OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.760e-42
Identity = 81/106 (76.42%), Postives = 94/106 (88.68%), Query Frame = -3
Query:  230 MALPKAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKATELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVAKTA 547
            M+L KA+E VS N V VFSKT+CPFCVSVK+L  +LG TFKA EL+ E DGS+IQ+ALAEWTGQ+TVPNVFIG KHIGGCD+TTALHREGKL+PLLTEAGA+AKT+
Sbjct:    1 MSLAKAKEIVSGNPVAVFSKTYCPFCVSVKDLLSKLGATFKAVELDSEKDGSEIQAALAEWTGQRTVPNVFIGRKHIGGCDATTALHREGKLLPLLTEAGAIAKTS 106          
BLAST of CF834961 vs. ExPASy Swiss-Prot
Match: GLRX_VERFO (Glutaredoxin OS=Vernicia fordii PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.120e-42
Identity = 80/102 (78.43%), Postives = 90/102 (88.24%), Query Frame = -3
Query:  242 MALPKAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKATELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 547
            MA+ KAQE VSSNSVVVFSKTFCP+C SVK+L  QLG  FK  EL+ ESDGSD+Q+ALAEWTGQ+TVPNVFIGGKHIGGCD TT +H+EGKL+PLLTEAGAV
Sbjct:    1 MAMIKAQELVSSNSVVVFSKTFCPYCTSVKQLLNQLGAQFKVIELDSESDGSDLQNALAEWTGQRTVPNVFIGGKHIGGCDKTTGMHQEGKLIPLLTEAGAV 102          
BLAST of CF834961 vs. ExPASy Swiss-Prot
Match: GRXC6_ORYSJ (Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN=GRXC6 PE=1 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 5.660e-41
Identity = 80/106 (75.47%), Postives = 94/106 (88.68%), Query Frame = -3
Query:  230 MALPKAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKATELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVAKTA 547
            MAL KA+ETV+S  VVV+SK++CPFCV VK+LF+QLG TFKA EL+ ESDGS++QSALAEWTGQ+TVPNVFI GKHIGGCD T AL+ EGKLVPLLTEAGA+A +A
Sbjct:    1 MALAKAKETVASAPVVVYSKSYCPFCVRVKKLFEQLGATFKAIELDGESDGSELQSALAEWTGQRTVPNVFINGKHIGGCDDTLALNNEGKLVPLLTEAGAIASSA 106          
BLAST of CF834961 vs. ExPASy Swiss-Prot
Match: GRXC2_ARATH (Glutaredoxin-C2 OS=Arabidopsis thaliana GN=GRXC2 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.261e-40
Identity = 81/107 (75.70%), Postives = 93/107 (86.92%), Query Frame = -3
Query:  230 MALPKAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKATELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVA-KTA 547
            MA+ KA+E V+S SVVVFSKT+CP+CV VKEL QQLG  FKA EL+ ESDGS IQS LAEWTGQ+TVPNVFIGG HIGGCD+T+ LH++GKLVPLLTEAGA+A KTA
Sbjct:    1 MAMQKAKEIVNSESVVVFSKTYCPYCVRVKELLQQLGAKFKAVELDTESDGSQIQSGLAEWTGQRTVPNVFIGGNHIGGCDATSNLHKDGKLVPLLTEAGAIAGKTA 107          
BLAST of CF834961 vs. ExPASy Swiss-Prot
Match: GLRX_RICCO (Glutaredoxin OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.821e-39
Identity = 76/102 (74.51%), Postives = 89/102 (87.25%), Query Frame = -3
Query:  242 MALPKAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKATELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 547
            MA+ K +E VSSN+VVVFSKT+CP+C SVK+L  QLG  +K  EL+ ESDGS+IQ+ALAEWTGQ+TVPNVFIGGKHIGGCDSTTA H +G+LVPLLTEAGAV
Sbjct:    1 MAMTKTKELVSSNAVVVFSKTYCPYCTSVKKLLDQLGAKYKVVELDTESDGSEIQTALAEWTGQRTVPNVFIGGKHIGGCDSTTAKHSQGQLVPLLTEAGAV 102          
BLAST of CF834961 vs. ExPASy Swiss-Prot
Match: GRXC4_ORYSJ (Glutaredoxin-C4, chloroplastic OS=Oryza sativa subsp. japonica GN=GRXC4 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.083e-35
Identity = 70/112 (62.50%), Postives = 89/112 (79.46%), Query Frame = -3
Query:  239 RIKDKEDTEMALPKAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKATELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVA 574
            ++++     MAL KA+E V+S+ VVVFSKT+CPFC  VK L  +L  ++KA EL+ ESDGS++QSALA+WTGQ+TVP VFI GKHIGGCD T A+H+ G LVPLLTEAGA+A
Sbjct:   18 QLEEPSKPVMALDKAKEIVASSPVVVFSKTYCPFCARVKRLLAELAASYKAVELDVESDGSELQSALADWTGQRTVPCVFIKGKHIGGCDDTMAMHKGGNLVPLLTEAGAIA 129          
BLAST of CF834961 vs. ExPASy Swiss-Prot
Match: GRXC1_ARATH (Glutaredoxin-C1 OS=Arabidopsis thaliana GN=GRXC1 PE=2 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 1.950e-33
Identity = 68/112 (60.71%), Postives = 86/112 (76.79%), Query Frame = -3
Query:  227 KEDTEMALPKAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKATELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVAKTAA 562
            KE+ E+ + KA+E VS+  VVVFSKT+C +C  VK+L  QLG TFK  EL++ SDG +IQSAL+EWTGQ TVPNVFI G HIGGCD     +++GKLVPLLTEAGA+A  ++
Sbjct:   12 KEEMEVVVNKAKEIVSAYPVVVFSKTYCGYCQRVKQLLTQLGATFKVLELDEMSDGGEIQSALSEWTGQTTVPNVFIKGNHIGGCDRVMETNKQGKLVPLLTEAGAIADNSS 123          
BLAST of CF834961 vs. ExPASy Swiss-Prot
Match: GLRX_DICDI (Glutaredoxin OS=Dictyostelium discoideum GN=grxA PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.655e-24
Identity = 51/98 (52.04%), Postives = 73/98 (74.49%), Query Frame = -3
Query:  248 LPKAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKATELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAG 541
            + K +  + ++ +++FSKT CP+C+SVK+LF++L V     EL+ ESDGS++QSA  + +G +TVP VFI  K IGGCD+TT LH +GKL+PLL EAG
Sbjct:    1 MDKVKALIKAHKLIIFSKTTCPYCISVKDLFKKLKVVPFVVELDLESDGSELQSAAGQISGVRTVPQVFINEKFIGGCDATTKLHSQGKLIPLLQEAG 98          
BLAST of CF834961 vs. ExPASy Swiss-Prot
Match: GLRX2_MOUSE (Glutaredoxin-2, mitochondrial OS=Mus musculus GN=Glrx2 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.217e-20
Identity = 44/100 (44.00%), Postives = 66/100 (66.00%), Query Frame = -3
Query:  260 EDTEMALPKAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKATELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLL 559
            + T   + + QET+S+N VV+FSKT C +C   K++F  + V +KA EL+    G+  Q AL + TG++TVP +F+ G+ IGG   T  LH+EGKL+PL+
Sbjct:   44 KSTTTPVNQIQETISNNCVVIFSKTSCSYCSMAKKIFHDMNVNYKAVELDMLEYGNQFQDALHKMTGERTVPRIFVNGRFIGGAADTHRLHKEGKLLPLV 143          
BLAST of CF834961 vs. ExPASy Swiss-Prot
Match: GLRX2_BOVIN (Glutaredoxin-2, mitochondrial OS=Bos taurus GN=GLRX2 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.194e-20
Identity = 44/90 (48.89%), Postives = 59/90 (65.56%), Query Frame = -3
Query:  260 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKATELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLL 529
            QET+S+N VV+FSKT C +C   K LF  + V +K  EL+    GS  Q AL + TG++TVP +F+ G  IGG   T  LH+EGKL+PL+
Sbjct:   55 QETISNNCVVIFSKTSCSYCTMAKNLFHDMNVNYKVVELDMLEYGSQFQDALHKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLV 144          
The following BLAST results are available for this feature:
BLAST of CF834961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
GLRX_SOLLC1.760e-4276.42Glutaredoxin OS=Solanum lycopersicum PE=3 SV=1[more]
GLRX_VERFO5.120e-4278.43Glutaredoxin OS=Vernicia fordii PE=3 SV=1[more]
GRXC6_ORYSJ5.660e-4175.47Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN... [more]
GRXC2_ARATH1.261e-4075.70Glutaredoxin-C2 OS=Arabidopsis thaliana GN=GRXC2 P... [more]
GLRX_RICCO1.821e-3974.51Glutaredoxin OS=Ricinus communis PE=3 SV=1[more]
GRXC4_ORYSJ2.083e-3562.50Glutaredoxin-C4, chloroplastic OS=Oryza sativa sub... [more]
GRXC1_ARATH1.950e-3360.71Glutaredoxin-C1 OS=Arabidopsis thaliana GN=GRXC1 P... [more]
GLRX_DICDI1.655e-2452.04Glutaredoxin OS=Dictyostelium discoideum GN=grxA P... [more]
GLRX2_MOUSE4.217e-2044.00Glutaredoxin-2, mitochondrial OS=Mus musculus GN=G... [more]
GLRX2_BOVIN7.194e-2048.89Glutaredoxin-2, mitochondrial OS=Bos taurus GN=GLR... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06H02_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834961 ID=CF834961; Name=CF834961; organism=Citrus sinensis; type=EST; length=594bp
TTTTTTTTTTTTTTTTTAAGTAAAAATGACTCTACATGGATATACTACCA
TTTAAAATCTGATAAAATTCATACAGATTTCAACATAAAACATAAACTGA
ACAAAAAAGTGCATTGGAAATTACTCAAATAAGCATAATTTCATGTTTAA
TTCAGACAGATTAAGCACTACCAACACATTCTTTATTTATTACTAGAATT
AACAGGGAGACAATAGCCATCCATCAGGCAGCTGTCTTGGCAACAGCTCC
AGCTTCAGTGAGCAGAGGAACCAGCTTCCCTTCCCTGTGCAGTGCAGTAG
TTGAATCGCAGCCACCAATGTGTTTCCCTCCGATGAAGACATTTGGAACA
GTTTTCTGTCCAGTCCACTCAGCTAGAGCTGATTGAATGTCACTTCCATC
ACTTTCTTTGTTCAGTTCGGTGGCCTTGAAAGTGACTCCGAGTTGCTGAA
ACAGCTCTTTGACACTCACGCAGAACGGACAAAACGTTTTGCTGAAAACG
ACGACGGAATTGGAGGAAACGGTTTCCTGGGCCTTGGGCAAAGCCATTTC
TGTGTCTTCTTTGTCTTTGATTCGAAATCTCACAAACCCTAAAT
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