CF834964

Overview
NameCF834964
Unique NameCF834964
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length482
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1090 contig Csv1_Contig1090:1..482. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834964 vs. ExPASy Swiss-Prot
Match: U4974_VITVI (UPF0497 membrane protein 4 OS=Vitis vinifera GN=GSVIVT00019813001 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 3.849e-24
Identity = 54/94 (57.45%), Postives = 70/94 (74.47%), Query Frame = 1
Query:  199 KQTTVVPLKIIQTLPPVNVAVTAKWQYSSAFVFNVVSNAIACSYAAISLLLVLADKNGNKGVAMFIXXXXXXXXXXXFSANGATGAVGLVGYQG 480
            KQT VV L+++ TLPP++V VTAKW+Y SAFV+ VVSNAIACSYAA+SLLL + +  GNKG+ + I           FS+NGA GA+GL+GY+G
Sbjct:   53 KQTKVVSLQLLPTLPPMDVPVTAKWRYLSAFVYFVVSNAIACSYAALSLLLSVGNSKGNKGLGLAITVMDLVMVALLFSSNGAAGAIGLMGYEG 146          
BLAST of CF834964 vs. ExPASy Swiss-Prot
Match: U497B_SOYBN (UPF0497 membrane protein 11 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.728e-19
Identity = 45/94 (47.87%), Postives = 64/94 (68.09%), Query Frame = 1
Query:  199 KQTTVVPLKIIQTLPPVNVAVTAKWQYSSAFVFNVVSNAIACSYAAISLLLVLADKNGNKGVAMFIXXXXXXXXXXXFSANGATGAVGLVGYQG 480
            KQT +VP+++  + PP+NV +TAKW   SAFV+ +V+NAIAC+YAA+SLLL L ++  +KG+   I           FS NGA  AVG++GY+G
Sbjct:   46 KQTKLVPIQLSDSFPPLNVPLTAKWHQMSAFVYFLVTNAIACTYAAMSLLLALVNRGKSKGLWTLIAVLDTFMVALLFSGNGAAAAVGILGYKG 139          
BLAST of CF834964 vs. ExPASy Swiss-Prot
Match: U497R_ARATH (UPF0497 membrane protein At4g15630 OS=Arabidopsis thaliana GN=At4g15630 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 3.156e-18
Identity = 46/95 (48.42%), Postives = 63/95 (66.32%), Query Frame = 1
Query:  199 KQTTVVPLKIIQTLPPVNVAVTAKWQYSSAFVFNVVSNAIACSYAAISLLLVLADK-NGNKGVAMFIXXXXXXXXXXXFSANGATGAVGLVGYQG 480
            KQT VVP+K+I TLPP+NV+ TAK  Y SAFV+N+ +NAIAC Y AIS+++V+  K   +K + M +           FS+ GA GA+GL+G  G
Sbjct:   50 KQTKVVPIKLIPTLPPLNVSTTAKASYLSAFVYNISANAIACGYTAISIVIVMISKGKRSKSLLMAVLIGDLMMVALLFSSTGAAGAIGLMGRHG 144          
BLAST of CF834964 vs. ExPASy Swiss-Prot
Match: U497A_SOYBN (UPF0497 membrane protein 10 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.156e-18
Identity = 44/94 (46.81%), Postives = 63/94 (67.02%), Query Frame = 1
Query:  199 KQTTVVPLKIIQTLPPVNVAVTAKWQYSSAFVFNVVSNAIACSYAAISLLLVLADKNGNKGVAMFIXXXXXXXXXXXFSANGATGAVGLVGYQG 480
            KQT VVP+++  +LPP++V +TAKW   SA V+ +V+NAIAC+YA +SLLL L ++  +KG+   I           FS NGA  AVG++GY+G
Sbjct:   45 KQTKVVPIQLSDSLPPLDVPLTAKWHQMSAIVYFLVTNAIACTYAVLSLLLALVNRGKSKGLWTLIAVLDAFMVALLFSGNGAAAAVGVLGYKG 138          
BLAST of CF834964 vs. ExPASy Swiss-Prot
Match: U4976_VITVI (UPF0497 membrane protein 6 OS=Vitis vinifera GN=GSVIVT00023588001 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 5.383e-18
Identity = 49/95 (51.58%), Postives = 63/95 (66.32%), Query Frame = 1
Query:  199 KQTTVVPLKIIQTLPPVNVAVTAKWQYSSAFVFNVVSNAIACSYAAISLLLV-LADKNGNKGVAMFIXXXXXXXXXXXFSANGATGAVGLVGYQG 480
            KQT ++PL +I+TLP ++V VTAKW   SAFV+ VVSNAIACSYAAISL+LV +  + G  G  + +           FSANGA  AVG++G  G
Sbjct:   56 KQTKIIPLTLIKTLPSLHVPVTAKWSDMSAFVYLVVSNAIACSYAAISLVLVTMLGRRGKGGRVLAVIVLDLHMVGLLFSANGAATAVGVLGQYG 150          
BLAST of CF834964 vs. ExPASy Swiss-Prot
Match: U497C_RICCO (UPF0497 membrane protein 12 OS=Ricinus communis GN=RCOM_0680180 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.952e-17
Identity = 45/93 (48.39%), Postives = 59/93 (63.44%), Query Frame = 1
Query:  202 QTTVVPLKIIQTLPPVNVAVTAKWQYSSAFVFNVVSNAIACSYAAISLLLVLADKNGNKGVAMFIXXXXXXXXXXXFSANGATGAVGLVGYQG 480
            QT  VP+++  ++PP+ V V AKW Y SAFVF VVSNAIACSYAAIS++L      G K +   I           FS+NGA  A+G++GY+G
Sbjct:   53 QTETVPIQLTSSMPPLYVPVVAKWHYLSAFVFFVVSNAIACSYAAISVMLSFC---GKKSMVPIILTLDLLMVALLFSSNGAATAIGVMGYKG 142          
BLAST of CF834964 vs. ExPASy Swiss-Prot
Match: U497Q_ARATH (UPF0497 membrane protein At4g15620 OS=Arabidopsis thaliana GN=At4g15620 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.621e-14
Identity = 41/95 (43.16%), Postives = 58/95 (61.05%), Query Frame = 1
Query:  199 KQTTVVPLKIIQTLPPVNVAVTAKWQYSSAFVFNVVSNAIACSYAAISL-LLVLADKNGNKGVAMFIXXXXXXXXXXXFSANGATGAVGLVGYQG 480
            KQT VV +K+I TLPP+++  TAK  Y SAFV+N+  NAIAC Y AIS+ +L+++    +K + M +           FS  GA  A+GL+G  G
Sbjct:   50 KQTKVVSIKLIPTLPPLDITTTAKASYLSAFVYNISVNAIACGYTAISIAILMISRGRRSKKLLMVVLLGDLVMVALLFSGTGAASAIGLMGLHG 144          
The following BLAST results are available for this feature:
BLAST of CF834964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
U4974_VITVI3.849e-2457.45UPF0497 membrane protein 4 OS=Vitis vinifera GN=GS... [more]
U497B_SOYBN3.728e-1947.87UPF0497 membrane protein 11 OS=Glycine max PE=2 SV... [more]
U497R_ARATH3.156e-1848.42UPF0497 membrane protein At4g15630 OS=Arabidopsis ... [more]
U497A_SOYBN3.156e-1846.81UPF0497 membrane protein 10 OS=Glycine max PE=2 SV... [more]
U4976_VITVI5.383e-1851.58UPF0497 membrane protein 6 OS=Vitis vinifera GN=GS... [more]
U497C_RICCO5.952e-1748.39UPF0497 membrane protein 12 OS=Ricinus communis GN... [more]
U497Q_ARATH1.621e-1443.16UPF0497 membrane protein At4g15620 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_06H04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834964 ID=CF834964; Name=CF834964; organism=Citrus sinensis; type=EST; length=482bp
TTCACTTGTCGCCTTAATTCTCTATTCTTTTTAAGGGTTACGTGTCTGTT
TCCTTCCTGGGAATTTGGAATGGATGGGCTGCAGGGAAAATCAGAGGTTG
CAGGAAATTATAAGAGAAAGCTGAATTATGGTGATTTGAGTCTGAGGGTA
TTGGCCTTGGCGCTAACACTTGTCGCTGCAATAGTTCTTGGAGTTGGCAA
GCAAACTACGGTTGTTCCACTCAAGATTATACAAACTTTGCCTCCTGTTA
ATGTTGCAGTCACCGCTAAGTGGCAGTACTCTTCTGCTTTTGTGTTCAAT
GTGGTGTCAAATGCCATAGCATGCTCATACGCAGCAATCTCTCTACTCCT
TGTGTTGGCTGACAAGAATGGAAACAAGGGGGTGGCTATGTTCATCCTTC
TTCTTGACCTAGCAATGGTAGCGCTGCTCTTTTCGGCCAACGGCGCCACT
GGTGCCGTCGGCCTCGTGGGCTACCAGGGGAA
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