CF835113

Overview
NameCF835113
Unique NameCF835113
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF835113 vs. ExPASy Swiss-Prot
Match: DYR_SCHPO (Dihydrofolate reductase OS=Schizosaccharomyces pombe GN=dfr1 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.823e-11
Identity = 41/136 (30.15%), Postives = 62/136 (45.59%), Query Frame = 3 
Query:  168 FEWFQFNKEFTEYTNLEECVSYLTEYITSNGPFDGLLGFSQGATLSALLLGYQAQGK---VLKEHPPMKLFVSISGSKFRDPSICEVAYKDTINVKSAHFIGAKDWL--RLPSEELATAFHKPLIIRHPQGHTVPR 560
            F WF+       Y + +E +  + +Y+   GPFDGL+GFSQGA + A+L      G+      +HPP K  V + G +   P   +  Y   +   S H  G  D L     S++L        ++ HP  H VP+
Sbjct:   73 FGWFEVEDFKNTYGSWDESLECINQYMQEKGPFDGLIGFSQGAGIGAMLAQMLQPGQPPNPYVQHPPFKFVVFVGGFRAEKPEF-DHFYNPKLTTPSLHIAGTSDTLVPLARSKQLVERCENAHVLLHPGQHIVPQ 207
The following BLAST results are available for this feature:
BLAST of CF835113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DYR_SCHPO1.823e-1130.15Dihydrofolate reductase OS=Schizosaccharomyces pom... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_06L04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06L04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835113 ID=CF835113; Name=CF835113; organism=Citrus sinensis; type=EST; length=634bp
TGAAATTATTCCGTTGAGATGGATTTAGAACCAGCGGGAAATTTCTTCAG
ACCCTTCTTAGCAAGTGGGATCCTTCTATTTTTGCTCACTTCGACATGGA
CTTCCCAGATGGGATTTTCCCGGCCGGCGGCAAATCTGATATAGAAGGCA
TATTTCCACCACCCTACTTCGAGTGGTTTCAATTCAACAAGGAGTTCACA
GAGTACACAAACCTGGAAGAATGCGTATCTTATTTAACTGAATACATTAC
AAGCAATGGCCCTTTTGATGGTTTACTCGGCTTCTCCCAGGGTGCAACAC
TGTCGGCTCTTTTGCTGGGCTACCAAGCACAGGGGAAGGTGTTGAAGGAG
CATCCACCGATGAAATTATTTGTGTCAATATCAGGTTCAAAGTTTAGGGA
TCCAAGCATATGCGAAGTTGCCTACAAAGACACCATCAATGTGAAATCTG
CCCACTTCATTGGAGCCAAGGACTGGTTGAGATTGCCCTCTGAGGAGCTG
GCCACTGCCTTCCACAAACCCCTCATCATAAGGCACCCCCAAGGCCACAC
TGTCCCTAGACTTGATGAGGCAGCCACCGAGTTGCTTCGCGGTTGGACCG
TGGACATCCTCCGGTGCAATAATTGCGGTCTGAA
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