CF835169

Overview
NameCF835169
Unique NameCF835169
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length657
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835169 vs. ExPASy Swiss-Prot
Match: VDAC1_SOLTU (Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 254.218 bits (648), Expect = 4.322e-67
Identity = 127/172 (73.84%), Postives = 148/172 (86.05%), Query Frame = -3
Query:  146 RLNSSIWHDYAGISTSVGLTANPIVNFSAVIGTKVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVNPL--TAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKA*VINAGIASALIQHERRPNSLFTISGEVDTKAIEKSAKFGLALALKP 655
            +L     HDYAGI TSVGLTANPIVNFS V+GT +++LGTD+SFD+K+G+FTKCNAGLSF NADL+ASLNLNNKGD+L ASYYH V+PL  TAVGAEV HSFST +N ITVGTQH LDPLT++KA + N G ASAL+QHE RP SLFT+SGEVDTK+++K AKFGLALALKP
Sbjct:  105 KLEVQYLHDYAGICTSVGLTANPIVNFSGVVGTNIIALGTDVSFDTKTGDFTKCNAGLSFTNADLVASLNLNNKGDNLTASYYHTVSPLTSTAVGAEVNHSFSTNENIITVGTQHRLDPLTSVKARINNFGKASALLQHEWRPKSLFTVSGEVDTKSVDKGAKFGLALALKP 276          
BLAST of CF835169 vs. ExPASy Swiss-Prot
Match: VDAC2_SOLTU (Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 238.039 bits (606), Expect = 3.205e-62
Identity = 118/165 (71.52%), Postives = 145/165 (87.88%), Query Frame = -3
Query:  146 HDYAGISTSVGLTANPIVNFSAVIGTKVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVNPL--TAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKA*VINAGIASALIQHERRPNSLFTISGEVDTKAIEKSAKFGLALALKP 634
            H+YAGI+TS+GLTA+P+VNFS V G   ++LGTDLSFD+ +GNFTKCNAGLSF+++DLIASL LN+KGD+++ASYYH V P+  TAVGAE+ HSFS+ +NT+T+GTQH+LDPLTT+KA V + G ASALIQHE RP SLFTISGEVDT+AIEKSAK GLA+ALKP
Sbjct:  112 HEYAGINTSIGLTASPLVNFSGVAGNNTVALGTDLSFDTATGNFTKCNAGLSFSSSDLIASLALNDKGDTVSASYYHTVKPVTNTAVGAELTHSFSSNENTLTIGTQHLLDPLTTVKARVNSYGKASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLAVALKP 276          
BLAST of CF835169 vs. ExPASy Swiss-Prot
Match: VDAC1_ARATH (Mitochondrial outer membrane protein porin 1 OS=Arabidopsis thaliana GN=At3g01280 PE=1 SV=3)

HSP 1 Score: 236.884 bits (603), Expect = 7.140e-62
Identity = 123/165 (74.55%), Postives = 140/165 (84.85%), Query Frame = -3
Query:  146 HDYAGISTSVGLTANPIVNFSAVIGTKVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVNPL--TAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKA*VINAGIASALIQHERRPNSLFTISGEVDTKAIEKSAKFGLALALKP 634
            H+YAGISTS+GLT NP VNFS VIG+ VL++GTD+SFD+KSGNFTK NAGLSF   DLIASL +N+KGD L ASYYH VNPL  TAVGAEV H  S+ D+TITVGTQH LDPLT++KA V +AGIASALIQHE +P S FTISGEVDTK+I+KSAK GLALALKP
Sbjct:  112 HEYAGISTSMGLTQNPTVNFSGVIGSNVLAVGTDVSFDTKSGNFTKINAGLSFTKEDLIASLTVNDKGDLLNASYYHIVNPLFNTAVGAEVSHKLSSKDSTITVGTQHSLDPLTSVKARVNSAGIASALIQHEWKPKSFFTISGEVDTKSIDKSAKVGLALALKP 276          
BLAST of CF835169 vs. ExPASy Swiss-Prot
Match: VDAC2_ARATH (Mitochondrial outer membrane protein porin 2 OS=Arabidopsis thaliana GN=HSR2 PE=1 SV=3)

HSP 1 Score: 223.402 bits (568), Expect = 8.169e-58
Identity = 111/164 (67.68%), Postives = 134/164 (81.71%), Query Frame = -3
Query:  146 WHDYAGISTSVGLTANPIVNFSAVIGTKVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKA*VINAGIASALIQHERRPNSLFTISGEVDTKAIEKSAKFGLALALKP 637
            +HDYAGISTSVG TA PIVNFS V+GT  LSLGTD++++++SGNF   NAG +F   DL ASL LN+KG+ L ASYY  V+P T VGAE+ H+F+T +N ITVGTQH LDPLTT+KA V NAG+A+ALIQHE RP S FT+SGEVD+KAI+KSAK G+ALALKP
Sbjct:  111 FHDYAGISTSVGFTATPIVNFSGVVGTNGLSLGTDVAYNTESGNFKHFNAGFNFTKDDLTASLILNDKGEKLNASYYQIVSPSTVVGAEISHNFTTKENAITVGTQHALDPLTTVKARVNNAGVANALIQHEWRPKSFFTVSGEVDSKAIDKSAKVGIALALKP 274          
BLAST of CF835169 vs. ExPASy Swiss-Prot
Match: VDAC1_ORYSJ (Mitochondrial outer membrane protein porin OS=Oryza sativa subsp. japonica GN=VDAC1 PE=1 SV=3)

HSP 1 Score: 223.016 bits (567), Expect = 1.067e-57
Identity = 111/164 (67.68%), Postives = 136/164 (82.93%), Query Frame = -3
Query:  146 HDYAGISTSVGLTANPIVNFSAVIGTKVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVN-PLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKA*VINAGIASALIQHERRPNSLFTISGEVDTKAIEKSAKFGLALALKP 634
            HDYAG+S S+GLTA+P+VN S+V GTK L++G D+S D+ +GN TK NAGLSF+N DLIASLNLNNKGDSL ASYYH VN   TAVGAE+ HSFS+ +N++T GTQH LDPLT +KA   N+G ASAL+QHE RP S++TIS EVDTKAI+KS+K G+A+ALKP
Sbjct:  111 HDYAGVSASIGLTASPVVNLSSVFGTKALAVGADVSLDTATGNLTKYNAGLSFSNDDLIASLNLNNKGDSLTASYYHIVNHSATAVGAELTHSFSSNENSLTFGTQHTLDPLTVVKARFNNSGKASALLQHEWRPKSVWTISAEVDTKAIDKSSKVGIAVALKP 274          
BLAST of CF835169 vs. ExPASy Swiss-Prot
Match: VDAC_PEA (Outer plastidial membrane protein porin OS=Pisum sativum GN=POR1 PE=1 SV=2)

HSP 1 Score: 219.55 bits (558), Expect = 1.180e-56
Identity = 113/165 (68.48%), Postives = 130/165 (78.79%), Query Frame = -3
Query:  146 HDYAGISTSVGLTANPIVNFSAVIGTKVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVNPL--TAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKA*VINAGIASALIQHERRPNSLFTISGEVDTKAIEKSAKFGLALALKP 634
            H+YAGIS+SVGL ANPIVNFS+VIGT  L+ G D+SFD+K G  TK NA ++F   DLI SL LN KGD L+ASYYH +NPL  TAVG ++ H FST +NT T+GTQH LDPLTT+K  V N+G ASALIQHE RP SL TIS EVDTKAIEKSAK GL+LALKP
Sbjct:  112 HEYAGISSSVGLKANPIVNFSSVIGTNALAFGADISFDTKLGELTKSNAAVNFVKDDLIGSLTLNEKGDLLSASYYHAINPLSNTAVGVDISHRFSTKENTFTLGTQHALDPLTTVKGRVTNSGKASALIQHEWRPKSLITISSEVDTKAIEKSAKIGLSLALKP 276          
BLAST of CF835169 vs. ExPASy Swiss-Prot
Match: VDAC1_WHEAT (Mitochondrial outer membrane porin OS=Triticum aestivum GN=VDAC1 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.442e-54
Identity = 108/164 (65.85%), Postives = 128/164 (78.05%), Query Frame = -3
Query:  146 HDYAGISTSVGLTANPIVNFSAVIGTKVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVNPL-TAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKA*VINAGIASALIQHERRPNSLFTISGEVDTKAIEKSAKFGLALALKP 634
            HDYAGI+ S+GLTANP+VN S   GT  L++G D+S D+ + NF K NA LS+ N DLIASLNLNNKGDSL ASYYH V    TAVGAE+ HSFS+ +N++T GTQH LDPLT +KA + N+G ASALIQHE  P SL TIS EVDTKAIEKS+K G+A+ALKP
Sbjct:  112 HDYAGINASIGLTANPVVNLSGAFGTSALAVGADVSLDTATKNFAKYNAALSYTNQDLIASLNLNNKGDSLTASYYHIVEKSGTAVGAELTHSFSSNENSLTFGTQHTLDPLTLVKARINNSGKASALIQHEFMPKSLCTISAEVDTKAIEKSSKVGIAIALKP 275          
BLAST of CF835169 vs. ExPASy Swiss-Prot
Match: VDAC_MAIZE (Outer plastidial membrane protein porin OS=Zea mays GN=POR1 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.001e-47
Identity = 98/171 (57.31%), Postives = 124/171 (72.51%), Query Frame = -3
Query:  149 RLNSSIWHDYAGISTSVGLTANPIVNFSAVIGTKVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFV--NPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKA*VINAGIASALIQHERRPNSLFTISGEVDTKAIEKSAKFGLALALK 655
            +L     H+YAG++ SVGL +NP+VN S   G+K LS+G D+SFD+ + +FTK NA LS  + DLIASL+LNN GD+L ASYYH V  +  TAVGAE+ HS S  ++T+  G+QH LDP TT+K    N G+ASAL+QHE RP S  TISG+VDTKAIEKS K GL+L LK
Sbjct:  106 KLEFQYLHEYAGVNASVGLNSNPMVNLSGAFGSKALSVGVDVSFDTATSDFTKYNAALSLTSPDLIASLHLNNHGDTLVASYYHLVKNHSGTAVGAELSHSMSRNESTLIFGSQHSLDPHTTIKTRFNNYGMASALVQHEWRPKSFVTISGDVDTKAIEKSTKVGLSLVLK 276          
The following BLAST results are available for this feature:
BLAST of CF835169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
VDAC1_SOLTU4.322e-6773.84Mitochondrial outer membrane protein porin of 34 k... [more]
VDAC2_SOLTU3.205e-6271.52Mitochondrial outer membrane protein porin of 36 k... [more]
VDAC1_ARATH7.140e-6274.55Mitochondrial outer membrane protein porin 1 OS=Ar... [more]
VDAC2_ARATH8.169e-5867.68Mitochondrial outer membrane protein porin 2 OS=Ar... [more]
VDAC1_ORYSJ1.067e-5767.68Mitochondrial outer membrane protein porin OS=Oryz... [more]
VDAC_PEA1.180e-5668.48Outer plastidial membrane protein porin OS=Pisum s... [more]
VDAC1_WHEAT1.442e-5465.85Mitochondrial outer membrane porin OS=Triticum aes... [more]
VDAC_MAIZE1.001e-4757.31Outer plastidial membrane protein porin OS=Zea may... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_06M17_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06M17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835169 ID=CF835169; Name=CF835169; organism=Citrus sinensis; type=EST; length=657bp
CCCTAAAAAGTTATGACACCGGTTTATGACCTTCCAATTTTATTTTACAA
TTCAAAACCACCGAGAAGAGATAAAACAAAACACATAATCAGTTTTGAAC
AGACCGCTAAACTATGCCTACCAACACCTACCAAGCACACAACTATGGCT
TTAGAGCCAATGCCAGTCCAAATTTGGCACTCTTCTCAATGGCCTTGGTG
TCCACCTCACCAGAAATGGTGAACAACGAATTTGGACGCCTCTCATGCTG
GATGAGAGCACTAGCAATGCCAGCATTGATCACTCACGCCTTCAATGTGG
TCAGTGGATCTAATATGTGCTGGGTCCCAACAGTGATGGTATTGTCAGTG
GTTGAGAAGCTATGGATTACTTCTGCACCAACAGCTGTCAAGGGATTAAC
AAAGTGGTAGTAGGATGCAGCCAGGGAATCACCTTTGTTGTTCAAATTCA
ATGAAGCAATAAGGTCGGCATTGTTGAAGCTCAGACCAGCATTGCATTTA
GTGAAGTTCCCAGATTTGGAGTCAAATGACAGATCAGTACCAAGAGAGAG
AACCTTAGTACCAATCACCGCCGAGAAGTTAACAATAGGATTCGCTGTTA
AGCCGACACTTGTGCTTATCCCCGCATAATCATGCCAAATACTGGAGTTC
AACCTTG
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