CF835353

Overview
NameCF835353
Unique NameCF835353
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length825
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1099 contig Csv1_Contig1099:1..825. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF835353 vs. ExPASy Swiss-Prot
Match: YAT4_SYNP1 (Uncharacterized 16.3 kDa protein in atpI 5'region OS=Synechococcus sp. (strain PCC 6716) PE=4 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.287e-14
Identity = 44/113 (38.94%), Postives = 67/113 (59.29%), Query Frame = 3 
Query:  399 ASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKL 737
            ++LAY GD +YEL+ R  FL PP  I  Y+++V+A VR E+Q   +  L    + +A E  + R G+N  +      +R  A +Y +A+  E L GYLYLT+  RL+DV++ L
Sbjct:   25 SALAYFGDAVYELFIRFIFLTPPQRINAYHHQVVAHVRAESQARYMDILW--PHCTAAELTIFRQGRNAAADG---PKRVPAKIYRQATGFEALLGYLYLTDPQRLQDVLALL 132
The following BLAST results are available for this feature:
BLAST of CF835353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YAT4_SYNP16.287e-1438.94Uncharacterized 16.3 kDa protein in atpI 5'region ... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01B15_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01B15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835353 ID=CF835353; Name=CF835353; organism=Citrus sinensis; type=EST; length=825bp
CAAATAATAGCAGCTTTCTCTTCCTCGTCATTCCTGAGAAAATGCCTGCG
ACTACTTGTACCAGTTGTCTATACTTGCCACTTTCATTATCTTCGTCAAG
AGTAAGAGCTTCATTCGACACCCAACAAAGACTTTCTTATAATCCAAACG
CCCCGAGGAAAATTAAAAAGCCAACCCTTAATCTTAATACCAACAGTAAC
AGTAACAAAAGTGACGTTGCAATTGCTAAACCTCCAACATCAACCGTCAC
CCCAACCAGCACAGACCAGTCAGTTTTCGACCTCCTCAAGCACCCAACTC
AAGGGGTGGTTGCAAATTTGGATGAATCTTATATGGGATATGAGAGGTGG
CTGCCAAATCCACCAAAAGTGGGGAAACCTCGATCGGTATTCAATGCAGC
ATCACTAGCATATATCGGTGATTGCATTTACGAGCTATATGCTCGCAGGC
ACTTTTTGTTTCCTCCACTGAGTATTGAAGAATACAACAATCGAGTAATG
GCAGTAGTACGCTGTGAAACACAGGATGCATTGCTCCAGAAACTTCTAAA
TGACAGTTACTTATCAGCGGAGGAAAGGGATGTTGTACGCTGGGGAAAAA
ATGTTGGTTCAGCTAATACACGAACAAAAAGACGTGCTGGTGCTGCAGTT
TATAATAGAGCCTCGTCATTAGAAACACTAGCTGGTTATCTCTACCTAAC
AAATGCCAATCGTCTGGAAGATGTAATGTCCAAGCTGGGATTTACAAACG
GTTCTTCTACGCAGATGATTTTGGAGGAAGCAAATAGCAAGTTAACAACC
GTCTAGAACGTGATTGATTTTTATC
back to top