CF835391

Overview
NameCF835391
Unique NameCF835391
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length553
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF835391 vs. ExPASy Swiss-Prot
Match: Y5848_ARATH (Uncharacterized protein At5g48480 OS=Arabidopsis thaliana GN=At5g48480 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.463e-13
Identity = 48/123 (39.02%), Postives = 66/123 (53.66%), Query Frame = -3 
Query:  189 VEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLVSDVSG--DSAAAQTVGTGCVLCLETEDXXXXXXXXXXXXXXXXXXXXXXXXACCGERVGKVKDPYGFTWL 551
            VEA K  DAV FYK+AFGA+E G S+  KRK +QELP +  ++L +AGS+F+V DVS     + A++ G+G    L T+D                           G + GKV DP+G TW+
Sbjct:   32 VEAQKVGDAVTFYKSAFGAIESGHSLYPKRKLDQELPHVLSSELNLAGSSFVVCDVSSLPGFSTAKSEGSGVTFLLGTKDAEAAVAKAVDAGAVKVEVTEAEVE--LGFK-GKVTDPFGVTWI 151
The following BLAST results are available for this feature:
BLAST of CF835391 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5848_ARATH1.463e-1339.02Uncharacterized protein At5g48480 OS=Arabidopsis t... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01C16_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835391 ID=CF835391; Name=CF835391; organism=Citrus sinensis; type=EST; length=553bp
TCATCACGATCAACGTTCAGCCATATCATCAAGATATCCGAAATACCCAA
AGAGCCTAGAGCTATAAACCCACAGCAGTAAAGACGAACGACAAAAGAGA
GTTATGTGATAGTAGATCAATATCTAAAGATCAGATCCGGCGGCTCTTAA
GCTTCCACGCCAGCGCACTTCTTGACCGGGGAGCAAATGAGCCAAGTGAA
GCCATAAGGATCTTTGACCTTTCCCACGCGCTCTCCACAACACGCGCCGT
TGCCTTCAGCGAGCTCACCCTCAGCAACAGCTCCAGCACTCACAGCCTTG
GCGACGGCAGCCTCCACGTCCTCGGTCTCCAAGCAAAGCACGCATCCGGT
CCCCACGGTCTGTGCAGCAGCAGAGTCACCGGAAACGTCAGAGACAAGGA
AAGTGGAGCCGGCAATCTCGAGTTGAGCGCAGGAGATGAGTGGGAGCTCC
TGTTCAGCCTTGCGTTTGGTTTCCACGCTACGGCCGATCTCCACGGCACC
AAACGCGGTCTTGTAGAACTGAACAGCGTCAGTAGCCTTCGGTGCTTCCA
CAA
back to top