CF835392

Overview
NameCF835392
Unique NameCF835392
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF835392 vs. ExPASy Swiss-Prot
Match: Y5848_ARATH (Uncharacterized protein At5g48480 OS=Arabidopsis thaliana GN=At5g48480 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.480e-16
Identity = 53/132 (40.15%), Postives = 71/132 (53.79%), Query Frame = 2 
Query:   47 FTGMKPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLVSDVSG--DSAAAQTVGTGCVLCLETEDXXXXXXXXXXXXXXXXXXXXXXXXXCCGERVGKVKDPYGFTWL 436
            FT  K  LLVEA K  DAV FYK+AFGA+E G S+  KRK +QELP +  ++L +AGS+F+V DVS     + A++ G+G    L T+D                           G + GKV DP+G TW+
Sbjct:   23 FTEFKQMLLVEAQKVGDAVTFYKSAFGAIESGHSLYPKRKLDQELPHVLSSELNLAGSSFVVCDVSSLPGFSTAKSEGSGVTFLLGTKDAEAAVAKAVDAGAVKVEVTEAEVE--LGFK-GKVTDPFGVTWI 151
The following BLAST results are available for this feature:
BLAST of CF835392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5848_ARATH9.480e-1640.15Uncharacterized protein At5g48480 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_01C16_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835392 ID=CF835392; Name=CF835392; organism=Citrus sinensis; type=EST; length=736bp
TCAGAATGGAGCTGCTTCGGAGAAGGCTCCTGCTACCGTGGCCAGCTTCA
CGGGGATGAAGCCGCAGTTGCTTGTGGAAGCACCGAAGGCTACTGACGCT
GTTCAGTTCTACAAGACCGCGTTTGGTGCCGTGGAGATCGGCCGTAGCGT
GGAAACCAAACGCAAGGCTGAACAGGAGCTCCCACTCATCTCCTGCGCTC
AACTCGAGATTGCCGGCTCCACTTTCCTTGTCTCTGACGTTTCCGGTGAC
TCTGCTGCTGCACAGACCGTGGGGACCGGATGCGTGCTTTGCTTGGAGAC
CGAGGACGTGGAGGCTGCCGTCGCCAAGGCTGTGAGTGCTGGAGCTGTTG
CTGAGGGTGAGCTCGCTGAAGGCAACGGCGCGTGTTGTGGAGAGCGCGTG
GGAAAGGTCAAAGATCCTTATGGCTTCACTTGGCTCATTTGCTCCCCGGT
CAAGAAGTGCGCTGGCGTGGAAGCTTAAGAGCCGCCGGATCTGATCTTTA
GATATTGATCTACTATCACATAACTCTCTTTTGTCGTTCGTCTTTACTGC
TGTGGGTTTATAGCTCTAGGCTCTTTTAGTATTTCGGATATCTTGATGAT
ATTGCTGAACGTTGATCGTGATGATGGATGTTTTTGATTAATTTTGAAGG
AACTGACAGCTGGCAGTTATAGACTTCTTGCTACTCTTATTATCAATTTA
TCATCTTCTATTTTGCTAGTAAAAAAAAAAAAAAAA
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