CF835393

Overview
NameCF835393
Unique NameCF835393
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1105 contig Csv1_Contig1105:1..661. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF835393 vs. ExPASy Swiss-Prot
Match: Y1044_ARATH (BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.236e-23
Identity = 50/54 (92.59%), Postives = 53/54 (98.15%), Query Frame = 3 
Query:  498 MACVKLGSKTDAFQRQGQAWFCTSGLPSDIVVEVGEMSFHLHKFPLLSRSGAME 659
            MAC+KLGSK+DAFQRQGQAWFCT+GLPSDIVVEVGEMSFHLHKFPLLSRSG ME
Sbjct:    1 MACMKLGSKSDAFQRQGQAWFCTTGLPSDIVVEVGEMSFHLHKFPLLSRSGVME 54
[Close]
BLAST of CF835393 vs. ExPASy Swiss-Prot
Match: RPT3_ARATH (Root phototropism protein 3 OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.813e-12
Identity = 28/47 (59.57%), Postives = 40/47 (85.11%), Query Frame = 3 
Query:  516 GSKTDAFQRQGQAWFCTSGLPSDIVVEVGEMSFHLHKFPLLSRSGAM 656
            G KTD F+ +GQ+WF  + +PSD++V++G+M+FHLHK+PLLSRSG M
Sbjct:   32 GVKTDGFELRGQSWFVATDIPSDLLVKIGDMNFHLHKYPLLSRSGKM 78
The following BLAST results are available for this feature:
BLAST of CF835393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y1044_ARATH2.236e-2392.59BTB/POZ domain-containing protein At1g30440 OS=Ara... [more]
RPT3_ARATH8.813e-1259.57Root phototropism protein 3 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_01C17_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835393 ID=CF835393; Name=CF835393; organism=Citrus sinensis; type=EST; length=661bp
TTGATTTTTGAAGGAAAGTGGAGGGGTTGACCAAATTAGGAAGTTTGGCG
TTTTTTAGGCTGAGAATTTAGTGCTTCTTCTGAAGTTGTTTTATGGTTAA
TTTTACATGGGATCAGAACTGGGTTTCTGAAAAGATTAACCTATTGATTG
ACTTTGGGGAAGTTTTTTTCTGAGAGTAGAGCGGCCTTGTGCTGTTTTCT
GGGCTTGTTTTTTACATAAATGTCATANAAGAAGCTACATTTTGGTGCTC
TTGCTACAATTTAGAAGATGAAGTCTGAGGAATTTTGGGTTGTTTTCTCA
ACGTTTTTGTGGGTAAATTTGGTTTGAGAGTGGCGTGCACTGTGCAGGAG
CAAAACTCAACTCGGATTGTGTGTTTGTTTGTGGAAGTGCTTTGGTTTGG
GGTATGGGGGGGTGTATTGTTCTTAAGTTAGGTGTTTAGCTTAGCTCTTT
ACTTGAAGCTCTATTTTTTATTTGATCCCAGCCTGCATCGTCAGAAAATG
GCTTGCGTGAAACTGGGATCCAAAACTGATGCGTTTCAACGGCAAGGACA
GGCATGGTTCTGCACATCTGGTCTTCCTAGTGATATAGTTGTTGAAGTTG
GAGAGATGTCCTTCCACCTCCACAAGTTCCCATTACTCTCTAGAAGTGGG
GCTATGGAAAG
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