CF835400

Overview
NameCF835400
Unique NameCF835400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835400 vs. ExPASy Swiss-Prot
Match: E134_MAIZE (Endo-1,3;1,4-beta-D-glucanase OS=Zea mays PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.888e-30
Identity = 69/153 (45.10%), Postives = 94/153 (61.44%), Query Frame = -2
Query:  296 AVLLISDVYGYEAPNLRKLADKVAAAGFYVAVPDFFHGDPYVADGGKPLQEWIKDHGVDKGFEEAKPVIQALKSKGITAIGAAGFCWGAKVVVQLAKREFIQAAVLLHPSFVTVDDIKGVEVPLSILGAEIDRLSPPALVKEFEEALNAKSGV 754
            AV+L SDV+GYEAP LR++ DKVA AG++V VPDF  GD    D  K   EW++ H   K  E+AKP+  ALK +G  ++   G+CWG K+ V++ K   ++A  L HP  VT DD+K V+ P+ ILGA+ D  +PP  V  F   L  +  V
Sbjct:   70 AVVLASDVFGYEAPLLRQIVDKVAKAGYFVVVPDFLKGD--YLDDKKNFTEWLEAHSPVKAAEDAKPLFAALKKEG-KSVAVGGYCWGGKLSVEVGKTSDVKAVCLSHPYSVTADDMKEVKWPIEILGAQNDTTTPPKEVYRFVHVLRERHEV 219          
BLAST of CF835400 vs. ExPASy Swiss-Prot
Match: CMBL_XENTR (Carboxymethylenebutenolidase homolog OS=Xenopus tropicalis GN=cmbl PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.893e-22
Identity = 69/202 (34.16%), Postives = 102/202 (50.50%), Query Frame = -2
Query:  164 AVLLISDVYGYEAPNLRKLADKVAAAGFYVAVPDFFHG-DPYVADGGK-PLQEWIKDHGVDKGFEEAKPVIQALKSK-GITAIGAAGFCWGAKVVVQL-AKREFIQAAVLLHPSFVTVDDIKGVEVPLSILGAEIDRLSPPALVKEFEEALNAKSGVDSFVKIFPKVAHGWTVRYNVEDETAVKA-AEEAHHNLLEWFAKYV 754
            AV+++ D++G++ PN R +AD + A G+    PDFF G +P+     +    EW++     K  +E   V++ LK +  +  IG  GFCWG  V   L  K   ++A V  +     V+D   +  P   + AE+D + P   V   EE L   S VD  VK+FPK  HG+  R N +     K   EEA  N+LEW  KY+
Sbjct:   44 AVIVVQDIFGWQLPNTRFMADLLTAHGYITICPDFFVGQEPWKPSNDRSTFTEWLQTRQATKVEKEINVVLKYLKEQCHVKKIGVIGFCWGGVVTHHLMLKYPELKAGVSFYGIIRDVEDRYNLLNPTLFIFAEMDHVIPLEQVSLLEEKLKVHSKVDFQVKVFPKQTHGFVHRKNEDINPEDKPFIEEARKNMLEWLHKYI 245          
BLAST of CF835400 vs. ExPASy Swiss-Prot
Match: CMBL_XENLA (Carboxymethylenebutenolidase homolog OS=Xenopus laevis GN=cmbl PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.733e-21
Identity = 67/205 (32.68%), Postives = 102/205 (49.76%), Query Frame = -2
Query:  164 AVLLISDVYGYEAPNLRKLADKVAAAGFYVAVPDFFHGDP--YVADGGKPLQEWIKDHGVDKGFEEAKPVIQALKSK-GITAIGAAGFCWGAKVVVQL-AKREFIQAAVLLHPSFVTVDDIKGVEVPLSILGAEIDRLSPPALVKEFEEALNAKSGVDSFVKIFPKVAHGWTVR----YNVEDETAVKAAEEAHHNLLEWFAKYV 754
            AV+++ D++G++ PN R +AD + A G+    PDFF G      ++      EW++     K  +E   V++ LK +  +  IG  GFCWG  V   L  K   ++A V  +     V+D   +  P   + AEID + P   V   E+ L   S VD  +K+FPK  HG+  R     N ED+  +   EEA  ++LEW  KY+
Sbjct:   44 AVIVVQDIFGWQLPNTRFMADLLTAHGYITICPDFFVGQESWKPSNDWSTFTEWLQTRQATKVEKEMNVVLKYLKEQCHVKKIGVIGFCWGGVVTHHLMLKYPELKAGVSFYGIIRDVEDRYNLLNPTLFIFAEIDHVIPLEQVSLLEQKLKVHSKVDFQIKVFPKQTHGFVHRKKEDINPEDKPFI---EEARKDMLEWLQKYI 245          
BLAST of CF835400 vs. ExPASy Swiss-Prot
Match: CMBL_MOUSE (Carboxymethylenebutenolidase homolog OS=Mus musculus GN=Cmbl PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.270e-18
Identity = 65/202 (32.18%), Postives = 97/202 (48.02%), Query Frame = -2
Query:  164 AVLLISDVYGYEAPNLRKLADKVAAAGFYVAVPDFFHG-DPYVADGG-KPLQEWIKDHGVDKGFEEAKPVIQALKSK-GITAIGAAGFCWGAKVVVQ-LAKREFIQAAVLLHPSFVTVDDIKGVEVPLSILGAEIDRLSPPALVKEFEEALNAKSGVDSFVKIFPKVAHGWTVRYNVEDETAVKA-AEEAHHNLLEWFAKYV 754
            AV+++ D++G++ PN R +AD +A  G+   VPDFF G +P+   G       W+K     K   E   V++ L+ +     IG  GFCWG  VV Q +     I+A V ++      +D+  ++ P   + AE D + P   V    + L     V+  VK F    HG+  R   +   A K   EEA  NL+EW  KYV
Sbjct:   44 AVIVVQDIFGWQLPNTRYMADMIARNGYTTIVPDFFVGQEPWDPAGDWSTFPAWLKSRNARKVNREVDAVLRYLRQQCHAQKIGIVGFCWGGVVVHQVMTAYPDIRAGVSVYGIIRDSEDVYNLKNPTLFIFAENDTVIPLEQVSTLTQKLKEHCIVNYQVKTFSGQTHGFVHRKREDCSPADKPYIEEARRNLIEWLNKYV 245          
BLAST of CF835400 vs. ExPASy Swiss-Prot
Match: CMBL_HUMAN (Carboxymethylenebutenolidase homolog OS=Homo sapiens GN=CMBL PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.824e-18
Identity = 63/202 (31.19%), Postives = 97/202 (48.02%), Query Frame = -2
Query:  164 AVLLISDVYGYEAPNLRKLADKVAAAGFYVAVPDFFHG-DPYVADGGKPL-QEWIKDHGVDKGFEEAKPVIQALKSK-GITAIGAAGFCWGAKVVVQL-AKREFIQAAVLLHPSFVTVDDIKGVEVPLSILGAEIDRLSPPALVKEFEEALNAKSGVDSFVKIFPKVAHGWTVRYNVEDETAVKA-AEEAHHNLLEWFAKYV 754
            AV++I D++G++ PN R +AD ++  G+   VPDFF G +P+   G   +  EW+K     K   E   +++ LK +     IG  GFCWG   V  L  K    +A V ++      +DI  ++ P   + AE D + P   V    + L     V+  +K F    HG+  R   +   A K   +EA  NL+EW  KY+
Sbjct:   44 AVIVIQDIFGWQLPNTRYIADMISGNGYTTIVPDFFVGQEPWDPSGDWSIFPEWLKTRNAQKIDREISAILKYLKQQCHAQKIGIVGFCWGGTAVHHLMMKYSEFRAGVSVYGIVKDSEDIYNLKNPTLFIFAENDVVIPLKDVSLLTQKLKEHCKVEYQIKTFSGQTHGFVHRKREDCSPADKPYIDEARRNLIEWLNKYM 245          
BLAST of CF835400 vs. ExPASy Swiss-Prot
Match: CMBL_PONAB (Carboxymethylenebutenolidase homolog OS=Pongo abelii GN=CMBL PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.229e-18
Identity = 63/202 (31.19%), Postives = 97/202 (48.02%), Query Frame = -2
Query:  164 AVLLISDVYGYEAPNLRKLADKVAAAGFYVAVPDFFHG-DPYVADGGKPL-QEWIKDHGVDKGFEEAKPVIQALKSK-GITAIGAAGFCWGAKVVVQL-AKREFIQAAVLLHPSFVTVDDIKGVEVPLSILGAEIDRLSPPALVKEFEEALNAKSGVDSFVKIFPKVAHGWTVRYNVEDETAVKA-AEEAHHNLLEWFAKYV 754
            AV++I D++G++ PN R +AD ++  G+   VPDFF G +P+   G   +  EW+K     K   E   +++ LK +     IG  GFCWG   V  L  K    +A V ++      +DI  ++ P   + AE D + P   V    + L     V+  +K F    HG+  R   +   A K   +EA  NL+EW  KY+
Sbjct:   44 AVIVIQDIFGWQLPNTRYMADMISGNGYTTIVPDFFVGQEPWDPSGDWSIFPEWLKTRNAQKIDREISAILKYLKQQCHAQKIGIVGFCWGGIAVHHLMMKYSEFRAGVSVYGIVKDSEDIYNLKNPTLFIFAENDVVIPLKDVSLLTQKLKEHCKVEYQIKTFSGQTHGFVHRKREDCSPADKPYIDEARRNLIEWLNKYM 245          
BLAST of CF835400 vs. ExPASy Swiss-Prot
Match: CMBL_RAT (Carboxymethylenebutenolidase homolog OS=Rattus norvegicus GN=Cmbl PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.394e-17
Identity = 63/202 (31.19%), Postives = 96/202 (47.52%), Query Frame = -2
Query:  164 AVLLISDVYGYEAPNLRKLADKVAAAGFYVAVPDFFHG-DPYVADGG-KPLQEWIKDHGVDKGFEEAKPVIQALKSK-GITAIGAAGFCWGAKVVVQ-LAKREFIQAAVLLHPSFVTVDDIKGVEVPLSILGAEIDRLSPPALVKEFEEALNAKSGVDSFVKIFPKVAHGWTVRYNVEDETAVKA-AEEAHHNLLEWFAKYV 754
            AV+++ D++G++  N R +AD +A  G+   VPDFF G +P+   G      EW+K     K   E   V++ LK +     IG  GFCWG  VV   +     ++A V ++      +D+  ++ P   + AE D + P   V    + L     V+  VK F    HG+  R   +   A K   EEA  NL+EW  KY+
Sbjct:   44 AVIVVQDIFGWQLSNTRYMADMIAGNGYTTIVPDFFVGQEPWDPAGDWSTFPEWLKSRNARKINREVDAVLRYLKQQCHAQKIGIVGFCWGGIVVHHVMTTYPEVRAGVSVYGIIRDSEDVYNLKNPTLFIFAENDAVIPLEQVSILIQKLKEHCIVNYQVKTFSGQTHGFVHRKREDCSPADKPYIEEARRNLIEWLNKYI 245          
BLAST of CF835400 vs. ExPASy Swiss-Prot
Match: AIM2_YEAST (Protein AIM2 OS=Saccharomyces cerevisiae GN=AIM2 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.027e-16
Identity = 59/197 (29.95%), Postives = 96/197 (48.73%), Query Frame = -2
Query:  176 VLLISDVYGYEAPNLRKLADKVAAAGFYVAVPDFFHGDPYVADGGKPLQEWIKDHGVDKGFEEAKPVIQALKSK-GITAIGAAGFCWGAKVVVQLAKRE--FIQAAVLLHPSFVTVDDIKGVE--VPLSILGAEIDRLSPPALVKEFEEALNAKSGVDSFVKIFPKVAHGWTVRYNVEDETAVKAAEEAHHNLLEWF 751
            +++++DVYG +  N+   ADK A+AG+ V VPD   GD   +D       W + H  +   +     ++ LK +     IG  G+C+GAK  VQ    +     AA + HPSFV++++I+ ++   P+ I  AE D + P  L    EE L         + +F  VAHG+  R ++       A E+   + + WF
Sbjct:   45 IVILTDVYGNKFNNVLLTADKFASAGYMVFVPDILFGDAISSDKPIDRDAWFQRHSPEVTKKIVDGFMKLLKLEYDPKFIGVVGYCFGAKFAVQHISGDGGLANAAAIAHPSFVSIEEIEAIDSKKPILISAAEEDHIFPANLRHLTEEKLKDNHATYQ-LDLFSGVAHGFAARGDISIPAVKYAKEKVLLDQIYWF 240          
The following BLAST results are available for this feature:
BLAST of CF835400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
E134_MAIZE1.888e-3045.10Endo-1,3;1,4-beta-D-glucanase OS=Zea mays PE=1 SV=... [more]
CMBL_XENTR1.893e-2234.16Carboxymethylenebutenolidase homolog OS=Xenopus tr... [more]
CMBL_XENLA2.733e-2132.68Carboxymethylenebutenolidase homolog OS=Xenopus la... [more]
CMBL_MOUSE1.270e-1832.18Carboxymethylenebutenolidase homolog OS=Mus muscul... [more]
CMBL_HUMAN4.824e-1831.19Carboxymethylenebutenolidase homolog OS=Homo sapie... [more]
CMBL_PONAB8.229e-1831.19Carboxymethylenebutenolidase homolog OS=Pongo abel... [more]
CMBL_RAT2.394e-1731.19Carboxymethylenebutenolidase homolog OS=Rattus nor... [more]
AIM2_YEAST2.027e-1629.95Protein AIM2 OS=Saccharomyces cerevisiae GN=AIM2 P... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_01C22_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835400 ID=CF835400; Name=CF835400; organism=Citrus sinensis; type=EST; length=761bp
TTTCCGAACTACCAATTTTTCGTTCATCTTTAAGGTTTTATTGAATTCGA
CATGAAAATCACACTCCATAAAAAGTCCGCATAGGTATTCAATTATTCAT
ACATGATAAATAGAGTTTCAAGTCTTCACACAACGAGCACTACTATTATC
TATCCAGTTACTTGACATACTTGGCAAACCACTCCAGCAAGTTGTGATGG
GCTTCCTCTGCAGCCTTCACAGCAGTTTCATCTTCTACATTATATCTCAC
TGTCCATCCATGAGCCACTTTAGGAAATATTTTCACAAAGCTATCAACCC
CAGATTTGGCATTTAAGGCTTCTTCAAATTCCTTCACGAGAGCTGGTGGA
GACAAGCGATCAATTTCGGCTCCTAGAATTGAAAGGGGAACCTCAACCCC
CTTGATATCATCTACAGTGACAAAAGAGGGATGTAACAGCACAGCAGCTT
GGATGAACTCACGTTTTGCTAGTTGAACAACCACTTTAGCGCCCCAGCAG
AAGCCCGCAGCCCCAATTGCAGTTATACCTTTACTCTTAAGAGCTTGAAT
AACTGGCTTTGCCTCTTCAAATCCCTTATCCACACCATGATCTTTTATCC
ATTCTTGTAGAGGTTTCCCACCATCAGCTACATATGGATCCCCATGAAAG
AAGTCAGGAACTGCCACGTAGAATCCAGCTGCTGCAACCTTGTCTGCAAG
CTTCCTCAAGTTTGGAGCTTCATAACCATAAACGTCGGAAATGAGAAGAA
CGGCAAGCTTG
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