CF835461
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835461 vs. ExPASy Swiss-Prot
Match: PSAEA_NICSY (Photosystem I reaction center subunit IV A, chloroplastic OS=Nicotiana sylvestris GN=PSAEA PE=1 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 2.600e-27 Identity = 70/128 (54.69%), Postives = 79/128 (61.72%), Query Frame = 3 Query: 108 TPNVATNVNSGSKSNMLFFPPKNNSSNSFRLVVRASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 491 TPNVA+N N+ S++ MLFF KN S + RLVVRA+ V+ILR+ESYWY G GSVVA DQDP +RYPVVVRFNKVNYANVSTNNYALDEIEEVK Sbjct: 17 TPNVASNTNT-SRTTMLFFSSKNYGSTAPRLVVRAAEEAAPPAAAATAEPAEAPVKAAKPPPIGPKRGTK--VRILRKESYWYKGTGSVVACDQDPNTRYPVVVRFNKVNYANVSTNNYALDEIEEVK 141
BLAST of CF835461 vs. ExPASy Swiss-Prot
Match: PSAEB_NICSY (Photosystem I reaction center subunit IV B, chloroplastic OS=Nicotiana sylvestris GN=PSAEB PE=1 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 1.686e-26 Identity = 68/130 (52.31%), Postives = 84/130 (64.62%), Query Frame = 3 Query: 108 TPNVATNVNSGSKSNMLFFPP-KNNSSNSF-RLVVRASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 491 TPN+AT+ N+ +++MLFF KNN++ +F RLVVRA+ V++LR+ESYWY G+GSVVAVDQDP +RYPVVVRFNKVNYANVSTNNYALDE+EEVK Sbjct: 17 TPNIATS-NTAPRTSMLFFSSSKNNTTTNFPRLVVRAAEEAAPPAATATAEGEAPPAKAAKPPPIGPKRGTK--VRVLRKESYWYKGVGSVVAVDQDPNTRYPVVVRFNKVNYANVSTNNYALDEVEEVK 143
BLAST of CF835461 vs. ExPASy Swiss-Prot
Match: PSAE_SPIOL (Photosystem I reaction center subunit IV, chloroplastic OS=Spinacia oleracea GN=PSAE-1 PE=1 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.131e-22 Identity = 48/55 (87.27%), Postives = 54/55 (98.18%), Query Frame = 3 Query: 324 VKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEV 488 V+I+R+ESYWY G+GSVVAVDQDPK+RYPVVVRFNKVNYANVSTNNYALDEI+EV Sbjct: 70 VRIMRKESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYALDEIQEV 124
BLAST of CF835461 vs. ExPASy Swiss-Prot
Match: PSAE2_ARATH (Photosystem I reaction center subunit IV B, chloroplastic OS=Arabidopsis thaliana GN=PSAE2 PE=1 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 2.519e-22 Identity = 48/56 (85.71%), Postives = 53/56 (94.64%), Query Frame = 3 Query: 324 VKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 491 VKILR+ESYWY +GSVVAVDQDPK+RYPVVVRF KVNYAN+STNNYALDE+EEVK Sbjct: 90 VKILRKESYWYKNVGSVVAVDQDPKTRYPVVVRFAKVNYANISTNNYALDEVEEVK 145
BLAST of CF835461 vs. ExPASy Swiss-Prot
Match: PSAE1_ARATH (Photosystem I reaction center subunit IV A, chloroplastic OS=Arabidopsis thaliana GN=PSAE1 PE=1 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.250e-21 Identity = 47/55 (85.45%), Postives = 52/55 (94.55%), Query Frame = 3 Query: 324 VKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEV 488 VKILRRESYW+ +GSVVAVDQDPK+RYPVVVRF KVNYAN+STNNYALDE+EEV Sbjct: 87 VKILRRESYWFKNVGSVVAVDQDPKTRYPVVVRFAKVNYANISTNNYALDEVEEV 141
BLAST of CF835461 vs. ExPASy Swiss-Prot
Match: PSAE_HORVU (Photosystem I reaction center subunit IV, chloroplastic OS=Hordeum vulgare GN=PSAE PE=1 SV=2) HSP 1 Score: 100.908 bits (250), Expect = 4.750e-21 Identity = 48/55 (87.27%), Postives = 50/55 (90.91%), Query Frame = 3 Query: 324 VKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEV 488 VKILRRESYWYNG GSVV VDQDP +RYPVVVRF KVNYA VSTNNYALDEI+EV Sbjct: 91 VKILRRESYWYNGTGSVVTVDQDPNTRYPVVVRFAKVNYAGVSTNNYALDEIKEV 145
BLAST of CF835461 vs. ExPASy Swiss-Prot
Match: PSAE_THEEB (Photosystem I reaction center subunit IV OS=Thermosynechococcus elongatus (strain BP-1) GN=psaE PE=1 SV=2) HSP 1 Score: 75.8702 bits (185), Expect = 1.636e-13 Identity = 36/62 (58.06%), Postives = 47/62 (75.81%), Query Frame = 3 Query: 324 VKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNY-------ANVSTNNYALDEIEEV 488 VKILR ESYWYN +G+V +VDQ P +YPV+VRF+KVNY + V+TNN+AL E++EV Sbjct: 8 VKILRPESYWYNEVGTVASVDQTPGVKYPVIVRFDKVNYTGYSGSASGVNTNNFALHEVQEV 69
BLAST of CF835461 vs. ExPASy Swiss-Prot
Match: PSAE_SYNEN (Photosystem I reaction center subunit IV OS=Synechococcus elongatus naegeli GN=psaE PE=1 SV=2) HSP 1 Score: 75.8702 bits (185), Expect = 1.636e-13 Identity = 36/62 (58.06%), Postives = 47/62 (75.81%), Query Frame = 3 Query: 324 VKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNY-------ANVSTNNYALDEIEEV 488 VKILR ESYWYN +G+V +VDQ P +YPV+VRF+KVNY + V+TNN+AL E++EV Sbjct: 8 VKILRPESYWYNEVGTVASVDQTPGVKYPVIVRFDKVNYTGYSGSASGVNTNNFALHEVQEV 69
BLAST of CF835461 vs. ExPASy Swiss-Prot
Match: PSAE_GLOVI (Photosystem I reaction center subunit IV OS=Gloeobacter violaceus GN=psaE PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.137e-13 Identity = 31/56 (55.36%), Postives = 45/56 (80.36%), Query Frame = 3 Query: 324 VKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 491 V+ILR+ESYWY +G+V +VD+ K+ YPV VRF KVNY+ ++TNN+ + E+EEV+ Sbjct: 9 VRILRKESYWYREVGTVASVDKSEKTIYPVTVRFEKVNYSGINTNNFGVSELEEVE 64
BLAST of CF835461 vs. ExPASy Swiss-Prot
Match: PSAE_CYAPA (Photosystem I reaction center subunit IV OS=Cyanophora paradoxa GN=psaE PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 3.645e-13 Identity = 33/56 (58.93%), Postives = 47/56 (83.93%), Query Frame = 3 Query: 324 VKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 491 V+ILR+ESYWY IG+V ++DQ +YPV+VRF KVNY+NV++NN++LDE+ EV+ Sbjct: 8 VRILRKESYWYQEIGTVASIDQSG-IKYPVIVRFEKVNYSNVNSNNFSLDEVVEVE 62 The following BLAST results are available for this feature:
BLAST of CF835461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 22
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835461 ID=CF835461; Name=CF835461; organism=Citrus sinensis; type=EST; length=581bpback to top |