CF835461

Overview
NameCF835461
Unique NameCF835461
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length581
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835461_ssr42 microsatellite CF835461_ssr42:42..57. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7909 contig Csv1_Contig7909:285..864. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835461 vs. ExPASy Swiss-Prot
Match: PSAEA_NICSY (Photosystem I reaction center subunit IV A, chloroplastic OS=Nicotiana sylvestris GN=PSAEA PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.600e-27
Identity = 70/128 (54.69%), Postives = 79/128 (61.72%), Query Frame = 3
Query:  108 TPNVATNVNSGSKSNMLFFPPKNNSSNSFRLVVRASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 491
            TPNVA+N N+ S++ MLFF  KN  S + RLVVRA+                                    V+ILR+ESYWY G GSVVA DQDP +RYPVVVRFNKVNYANVSTNNYALDEIEEVK
Sbjct:   17 TPNVASNTNT-SRTTMLFFSSKNYGSTAPRLVVRAAEEAAPPAAAATAEPAEAPVKAAKPPPIGPKRGTK--VRILRKESYWYKGTGSVVACDQDPNTRYPVVVRFNKVNYANVSTNNYALDEIEEVK 141          
BLAST of CF835461 vs. ExPASy Swiss-Prot
Match: PSAEB_NICSY (Photosystem I reaction center subunit IV B, chloroplastic OS=Nicotiana sylvestris GN=PSAEB PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.686e-26
Identity = 68/130 (52.31%), Postives = 84/130 (64.62%), Query Frame = 3
Query:  108 TPNVATNVNSGSKSNMLFFPP-KNNSSNSF-RLVVRASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 491
            TPN+AT+ N+  +++MLFF   KNN++ +F RLVVRA+                                    V++LR+ESYWY G+GSVVAVDQDP +RYPVVVRFNKVNYANVSTNNYALDE+EEVK
Sbjct:   17 TPNIATS-NTAPRTSMLFFSSSKNNTTTNFPRLVVRAAEEAAPPAATATAEGEAPPAKAAKPPPIGPKRGTK--VRVLRKESYWYKGVGSVVAVDQDPNTRYPVVVRFNKVNYANVSTNNYALDEVEEVK 143          
BLAST of CF835461 vs. ExPASy Swiss-Prot
Match: PSAE_SPIOL (Photosystem I reaction center subunit IV, chloroplastic OS=Spinacia oleracea GN=PSAE-1 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.131e-22
Identity = 48/55 (87.27%), Postives = 54/55 (98.18%), Query Frame = 3
Query:  324 VKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEV 488
            V+I+R+ESYWY G+GSVVAVDQDPK+RYPVVVRFNKVNYANVSTNNYALDEI+EV
Sbjct:   70 VRIMRKESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYALDEIQEV 124          
BLAST of CF835461 vs. ExPASy Swiss-Prot
Match: PSAE2_ARATH (Photosystem I reaction center subunit IV B, chloroplastic OS=Arabidopsis thaliana GN=PSAE2 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.519e-22
Identity = 48/56 (85.71%), Postives = 53/56 (94.64%), Query Frame = 3
Query:  324 VKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 491
            VKILR+ESYWY  +GSVVAVDQDPK+RYPVVVRF KVNYAN+STNNYALDE+EEVK
Sbjct:   90 VKILRKESYWYKNVGSVVAVDQDPKTRYPVVVRFAKVNYANISTNNYALDEVEEVK 145          
BLAST of CF835461 vs. ExPASy Swiss-Prot
Match: PSAE1_ARATH (Photosystem I reaction center subunit IV A, chloroplastic OS=Arabidopsis thaliana GN=PSAE1 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.250e-21
Identity = 47/55 (85.45%), Postives = 52/55 (94.55%), Query Frame = 3
Query:  324 VKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEV 488
            VKILRRESYW+  +GSVVAVDQDPK+RYPVVVRF KVNYAN+STNNYALDE+EEV
Sbjct:   87 VKILRRESYWFKNVGSVVAVDQDPKTRYPVVVRFAKVNYANISTNNYALDEVEEV 141          
BLAST of CF835461 vs. ExPASy Swiss-Prot
Match: PSAE_HORVU (Photosystem I reaction center subunit IV, chloroplastic OS=Hordeum vulgare GN=PSAE PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 4.750e-21
Identity = 48/55 (87.27%), Postives = 50/55 (90.91%), Query Frame = 3
Query:  324 VKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEV 488
            VKILRRESYWYNG GSVV VDQDP +RYPVVVRF KVNYA VSTNNYALDEI+EV
Sbjct:   91 VKILRRESYWYNGTGSVVTVDQDPNTRYPVVVRFAKVNYAGVSTNNYALDEIKEV 145          
BLAST of CF835461 vs. ExPASy Swiss-Prot
Match: PSAE_THEEB (Photosystem I reaction center subunit IV OS=Thermosynechococcus elongatus (strain BP-1) GN=psaE PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.636e-13
Identity = 36/62 (58.06%), Postives = 47/62 (75.81%), Query Frame = 3
Query:  324 VKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNY-------ANVSTNNYALDEIEEV 488
            VKILR ESYWYN +G+V +VDQ P  +YPV+VRF+KVNY       + V+TNN+AL E++EV
Sbjct:    8 VKILRPESYWYNEVGTVASVDQTPGVKYPVIVRFDKVNYTGYSGSASGVNTNNFALHEVQEV 69          
BLAST of CF835461 vs. ExPASy Swiss-Prot
Match: PSAE_SYNEN (Photosystem I reaction center subunit IV OS=Synechococcus elongatus naegeli GN=psaE PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.636e-13
Identity = 36/62 (58.06%), Postives = 47/62 (75.81%), Query Frame = 3
Query:  324 VKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNY-------ANVSTNNYALDEIEEV 488
            VKILR ESYWYN +G+V +VDQ P  +YPV+VRF+KVNY       + V+TNN+AL E++EV
Sbjct:    8 VKILRPESYWYNEVGTVASVDQTPGVKYPVIVRFDKVNYTGYSGSASGVNTNNFALHEVQEV 69          
BLAST of CF835461 vs. ExPASy Swiss-Prot
Match: PSAE_GLOVI (Photosystem I reaction center subunit IV OS=Gloeobacter violaceus GN=psaE PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.137e-13
Identity = 31/56 (55.36%), Postives = 45/56 (80.36%), Query Frame = 3
Query:  324 VKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 491
            V+ILR+ESYWY  +G+V +VD+  K+ YPV VRF KVNY+ ++TNN+ + E+EEV+
Sbjct:    9 VRILRKESYWYREVGTVASVDKSEKTIYPVTVRFEKVNYSGINTNNFGVSELEEVE 64          
BLAST of CF835461 vs. ExPASy Swiss-Prot
Match: PSAE_CYAPA (Photosystem I reaction center subunit IV OS=Cyanophora paradoxa GN=psaE PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.645e-13
Identity = 33/56 (58.93%), Postives = 47/56 (83.93%), Query Frame = 3
Query:  324 VKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 491
            V+ILR+ESYWY  IG+V ++DQ    +YPV+VRF KVNY+NV++NN++LDE+ EV+
Sbjct:    8 VRILRKESYWYQEIGTVASIDQSG-IKYPVIVRFEKVNYSNVNSNNFSLDEVVEVE 62          
The following BLAST results are available for this feature:
BLAST of CF835461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
PSAEA_NICSY2.600e-2754.69Photosystem I reaction center subunit IV A, chloro... [more]
PSAEB_NICSY1.686e-2652.31Photosystem I reaction center subunit IV B, chloro... [more]
PSAE_SPIOL1.131e-2287.27Photosystem I reaction center subunit IV, chloropl... [more]
PSAE2_ARATH2.519e-2285.71Photosystem I reaction center subunit IV B, chloro... [more]
PSAE1_ARATH1.250e-2185.45Photosystem I reaction center subunit IV A, chloro... [more]
PSAE_HORVU4.750e-2187.27Photosystem I reaction center subunit IV, chloropl... [more]
PSAE_THEEB1.636e-1358.06Photosystem I reaction center subunit IV OS=Thermo... [more]
PSAE_SYNEN1.636e-1358.06Photosystem I reaction center subunit IV OS=Synech... [more]
PSAE_GLOVI2.137e-1355.36Photosystem I reaction center subunit IV OS=Gloeob... [more]
PSAE_CYAPA3.645e-1358.93Photosystem I reaction center subunit IV OS=Cyanop... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01E08_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835461 ID=CF835461; Name=CF835461; organism=Citrus sinensis; type=EST; length=581bp
ACCATTTTCTGCAACTCTCTCCCCAGTTAAACAGAAACAGCGAAAGAAAG
AAAGAAAAAGCAATGGCTAGCTGCAACATGGCATCAGCTGCTTCTGGGTT
TTCGCTGACACCCAATGTTGCCACCAATGTAAACTCAGGTTCCAAGAGCA
ACATGCTGTTTTTCCCTCCAAAGAACAACAGCTCCAACAGTTTCAGGCTT
GTTGTAAGGGCTTCTGAGGAGGCTGCTGCCCCGCCGGCTGCTGCCACCAC
CGCTGCCCCAGCTGAAGGTGAAGCAGCTCCCAAGCCCAAGCCACCTCCGA
TTGGACCCAAGAGAGGCGCCAAGGTTAAGATTCTCAGGAGGGAGTCCTAC
TGGTACAATGGCATTGGATCTGTGGTTGCTGTTGACCAGGATCCCAAGAG
TCGGTACCCAGTTGTGGTTCGATTCAACAAGGTTAACTATGCAAATGTAT
CGACGAACAACTATGCATTGGATGAGATCGAAGAAGTTAAATGAGTTATG
TAATTTTGATTTGCATATTATTCCCCGCTCTAGATTAAGCCTTTGTGTGC
CAGGAATGTGTATTCAAAAAAAAAAAAAAAA
back to top