CF835553

Overview
NameCF835553
Unique NameCF835553
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6152 contig Csv1_Contig6152:219..996. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF835553 vs. ExPASy Swiss-Prot
Match: VPS29_DANRE (Vacuolar protein sorting-associated protein 29 OS=Danio rerio GN=vps29 PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 3.732e-66
Identity = 112/177 (63.28%), Postives = 146/177 (82.49%), Query Frame = -3 
Query:  204 IGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKKT 734
            +GDLHIPHR + LP KFK +LVPGKIQHI+CTGNL  KE +DYLK+L  D+H+ RG++DE+  YPE K +T+GQFK+G+ HGHQVIPWGD+ SLA+LQRQLDVDIL++GHTH+F+A+++E    INPGSATGAYS+   ++ PSFVLMDI    VV YVY+LI  +VKV++I++KK+
Sbjct:    6 LGDLHIPHRCNTLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQLDVDILISGHTHKFEAFENENKFYINPGSATGAYSALESNITPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKKS 182
[Close]
BLAST of CF835553 vs. ExPASy Swiss-Prot
Match: VPS29_PONAB (Vacuolar protein sorting-associated protein 29 OS=Pongo abelii GN=VPS29 PE=2 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 6.365e-66
Identity = 111/177 (62.71%), Postives = 145/177 (81.92%), Query Frame = -3 
Query:  204 IGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKKT 734
            +GDLHIPHR + LP KFK +LVPGKIQHI+CTGNL  KE +DYLK+L  D+H+ RG++DE+  YPE K +T+GQFK+G+ HGHQVIPWGD+ SLA+LQRQ DVDIL++GHTH+F+A++HE    INPGSATGAY++   ++ PSFVLMDI    VV YVY+LI  +VKV++I++KK+
Sbjct:    6 LGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALEANIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKKS 182
[Close]
BLAST of CF835553 vs. ExPASy Swiss-Prot
Match: VPS29_MOUSE (Vacuolar protein sorting-associated protein 29 OS=Mus musculus GN=Vps29 PE=1 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 6.365e-66
Identity = 111/177 (62.71%), Postives = 145/177 (81.92%), Query Frame = -3 
Query:  204 IGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKKT 734
            +GDLHIPHR + LP KFK +LVPGKIQHI+CTGNL  KE +DYLK+L  D+H+ RG++DE+  YPE K +T+GQFK+G+ HGHQVIPWGD+ SLA+LQRQ DVDIL++GHTH+F+A++HE    INPGSATGAY++   ++ PSFVLMDI    VV YVY+LI  +VKV++I++KK+
Sbjct:    6 LGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKKS 182
[Close]
BLAST of CF835553 vs. ExPASy Swiss-Prot
Match: VPS29_BOVIN (Vacuolar protein sorting-associated protein 29 OS=Bos taurus GN=VPS29 PE=2 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 6.365e-66
Identity = 111/177 (62.71%), Postives = 145/177 (81.92%), Query Frame = -3 
Query:  204 IGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKKT 734
            +GDLHIPHR + LP KFK +LVPGKIQHI+CTGNL  KE +DYLK+L  D+H+ RG++DE+  YPE K +T+GQFK+G+ HGHQVIPWGD+ SLA+LQRQ DVDIL++GHTH+F+A++HE    INPGSATGAY++   ++ PSFVLMDI    VV YVY+LI  +VKV++I++KK+
Sbjct:   10 LGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKKS 186
[Close]
BLAST of CF835553 vs. ExPASy Swiss-Prot
Match: VPS29_RAT (Vacuolar protein sorting-associated protein 29 OS=Rattus norvegicus GN=Vps29 PE=1 SV=2)

HSP 1 Score: 250.366 bits (638), Expect = 8.313e-66
Identity = 111/177 (62.71%), Postives = 144/177 (81.36%), Query Frame = -3 
Query:  204 IGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKKT 734
            +GDLHIPHR + LP KFK +LVPGKIQHI+CTGNL  KE +DYLK+L  D+H+ RG++DE   YPE K +T+GQFK+G+ HGHQVIPWGD+ SLA+LQRQ DVDIL++GHTH+F+A++HE    INPGSATGAY++   ++ PSFVLMDI    VV YVY+LI  +VKV++I++KK+
Sbjct:    6 LGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDESLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKKS 182
[Close]
BLAST of CF835553 vs. ExPASy Swiss-Prot
Match: VPS29_HUMAN (Vacuolar protein sorting-associated protein 29 OS=Homo sapiens GN=VPS29 PE=1 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 8.313e-66
Identity = 111/176 (63.07%), Postives = 144/176 (81.82%), Query Frame = -3 
Query:  207 IGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKK 734
            +GDLHIPHR + LP KFK +LVPGKIQHI+CTGNL  KE +DYLK+L  D+H+ RG++DE+  YPE K +T+GQFK+G+ HGHQVIPWGD+ SLA+LQRQ DVDIL++GHTH+F+A++HE    INPGSATGAY++   ++ PSFVLMDI    VV YVY+LI  +VKV++I++KK
Sbjct:    6 LGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKK 181
[Close]
BLAST of CF835553 vs. ExPASy Swiss-Prot
Match: VPS29_CHICK (Vacuolar protein sorting-associated protein 29 OS=Gallus gallus GN=VPS29 PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.418e-65
Identity = 111/177 (62.71%), Postives = 144/177 (81.36%), Query Frame = -3 
Query:  204 IGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKKT 734
            +GDLHIPHR + LP KFK +LVPGKIQHI+CTGNL  K+ +DYLK+L  D+HV RG++DE+  YPE K +T+GQFK+G+ HGHQVIPWGD+ SLA+LQRQ DVDIL++GHTH+F+A++HE    INPGSATGAY +   ++ PSFVLMDI    VV YVY+LI  +VKV++I++KK+
Sbjct:   10 LGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKDTYDYLKTLAGDVHVVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYHALENNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKKS 186
[Close]
BLAST of CF835553 vs. ExPASy Swiss-Prot
Match: VPS29_XENTR (Vacuolar protein sorting-associated protein 29 OS=Xenopus tropicalis GN=vps29 PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 5.389e-65
Identity = 111/177 (62.71%), Postives = 144/177 (81.36%), Query Frame = -3 
Query:  204 IGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKKT 734
            +GDLHIPHR + LP KFK +LVPGKIQHI+CTGNL  KE  DYLK+L  D+H+ RG++DE+  YPE K +T+GQFK+G+ HGHQVIPWGD+ SLA+LQRQLDVDIL++GHT +F+A++HE    INPGSATGAY++   ++ PSFVLMDI    VV YVY+LI  +VKV++I++KK+
Sbjct:    6 LGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESFDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQLDVDILISGHTQKFEAFEHENKFYINPGSATGAYNALENNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKKS 182
[Close]
BLAST of CF835553 vs. ExPASy Swiss-Prot
Match: VPS29_XENLA (Vacuolar protein sorting-associated protein 29 OS=Xenopus laevis GN=vps29 PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 5.389e-65
Identity = 111/177 (62.71%), Postives = 144/177 (81.36%), Query Frame = -3 
Query:  204 IGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKKT 734
            +GDLHIPHR + LP KFK +LVPGKIQHI+CTGNL  KE  DYLK+L  D+H+ RG++DE+  YPE K +T+GQFK+G+ HGHQVIPWGD+ SLA+LQRQLDVDIL++GHT +F+A++HE    INPGSATGAY++   ++ PSFVLMDI    VV YVY+LI  +VKV++I++KK+
Sbjct:    6 LGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESFDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQLDVDILISGHTQKFEAFEHENKFYINPGSATGAYNALENNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKKS 182
[Close]
BLAST of CF835553 vs. ExPASy Swiss-Prot
Match: VPS29_DICDI (Vacuolar protein sorting-associated protein 29 OS=Dictyostelium discoideum GN=vps29 PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.957e-63
Identity = 105/177 (59.32%), Postives = 141/177 (79.66%), Query Frame = -3 
Query:  207 AIGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKK 737
            AIGD+H+PHR+  +P +FK +LVP KIQHI+CTGNL  KE+HDY K L  D+H+ RG+ DE++ YP+TK ++IGQFK G+CHGHQ++PWGD  SLA LQRQLDVD+L++GHTH  + ++  G + +NPGSATGA+S+ + DV PSFVLMD+    + VY+Y+LIDG+VKV+KID  K
Sbjct:    5 AIGDVHVPHRSYGIPPEFKKLLVPEKIQHILCTGNLVSKEIHDYFKVLTSDVHIVRGDLDENTSYPDTKIVSIGQFKFGLCHGHQIVPWGDRASLAALQRQLDVDVLISGHTHVLEVFESNGKLFVNPGSATGAFSNISNDVIPSFVLMDVQSNNITVYIYKLIDGQVKVEKIDHVK 181
The following BLAST results are available for this feature:
BLAST of CF835553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
VPS29_DANRE3.732e-6663.28Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_PONAB6.365e-6662.71Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_MOUSE6.365e-6662.71Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_BOVIN6.365e-6662.71Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_RAT8.313e-6662.71Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_HUMAN8.313e-6663.07Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_CHICK1.418e-6562.71Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_XENTR5.389e-6562.71Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_XENLA5.389e-6562.71Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_DICDI2.957e-6359.32Vacuolar protein sorting-associated protein 29 OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01H11_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835553 ID=CF835553; Name=CF835553; organism=Citrus sinensis; type=EST; length=778bp
TTTTTTTTTCTCGTATGCTAGGAATGAGCCCAAGTAAATATTAGATTTAT
TCGTTTCAATACATGTTCTCCAGAATCCAGCAAAACTGTTAAAGAGAATT
TACACATGAACAACTTATTGGCATTACATAAAAGTTCTCAGCAATTAGTC
CAACAAAGTCAAGGATGCAGTGTGCTGAATCAGTGGGCTAATCGAGTAGT
GGCAGTCTTCTTAAAATCAATTTTGTCAACCTTTACTTCACCGTCAATTA
ATTCGTATACATAAACCACGACTCGCAGACCATCAATGTCCATGAGTACA
AAGCTTGGGTTTACATCAAATGTAAAGCTACTGTAGGCACCAGTTGCAGA
GCCAGGATTTATAACAACACCACCTTCATGTTTGTAGGCTTTGAACTGAT
GGGTATGACCAGTCACAAGGATGTCCACATCCAACTGCCTTTGCAGCATT
GCCAGCGAATCCAAGTCCCCCCACGGAATAACCTGATGACCATGGCAGAT
TCCAAGCTTGAATTGCCCAATGGTGAGTGTCTTAGTTTCGGGATAACGTG
AATCTTCATCATATTCACCTCGAGTGACATGCAAATCAGGACAAAGACTC
TTCAAATAATCATGGACTTCTTTGATAGAGAGATTGCCAGTGCAAATGAT
GTGCTGAATTTTGCCAGGAACGAGCATAGATTTGAACTTTTGGGGCAGGT
CAGATGCACGGTGAGGAATGTGAAGGTCTCCGATTGCTAATACTAACACC
ATCTTCAACAAAATAAGCAATCTCTCTC
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