CF835578

Overview
NameCF835578
Unique NameCF835578
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835578_ssr521 microsatellite CF835578_ssr521:521..532. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1113 contig Csv1_Contig1113:1..784. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B_GOSHI (Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 180.259 bits (456), Expect = 1.079e-44
Identity = 94/103 (91.26%), Postives = 96/103 (93.20%), Query Frame = -1
Query:  233 SGDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 541
            +GD       KS+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   45 AGDKKKKRVKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 147          
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B3_SOLLC (Histone H2B.3 (Fragment) OS=Solanum lycopersicum GN=H2B-3 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.403e-44
Identity = 93/103 (90.29%), Postives = 96/103 (93.20%), Query Frame = -1
Query:  233 SGDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 541
            +GD       K++ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   35 AGDKKKKRSKKAVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 137          
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B11_ARATH (Histone H2B.11 OS=Arabidopsis thaliana GN=At5g59910 PE=1 SV=5)

HSP 1 Score: 178.718 bits (452), Expect = 3.139e-44
Identity = 93/102 (91.18%), Postives = 95/102 (93.14%), Query Frame = -1
Query:  233 GDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 538
            GD       KS+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEAS+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   49 GDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150          
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B3_MEDTR (Probable histone H2B.3 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 177.563 bits (449), Expect = 6.992e-44
Identity = 92/103 (89.32%), Postives = 95/103 (92.23%), Query Frame = -1
Query:  233 SGDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 541
            S D       KS+ETYKIYIFKVLKQVHPDIG+SSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   36 SSDKKKKRTKKSVETYKIYIFKVLKQVHPDIGVSSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 138          
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B1_MEDTR (Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 177.563 bits (449), Expect = 6.992e-44
Identity = 92/103 (89.32%), Postives = 96/103 (93.20%), Query Frame = -1
Query:  233 SGDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 541
            +G+       KS+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   46 AGEKKKKRSKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148          
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B1_ARATH (Histone H2B.1 OS=Arabidopsis thaliana GN=At1g07790 PE=1 SV=3)

HSP 1 Score: 176.792 bits (447), Expect = 1.193e-43
Identity = 91/103 (88.35%), Postives = 96/103 (93.20%), Query Frame = -1
Query:  233 SGDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 541
            +GD       K++ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   46 AGDKKKKRSKKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148          
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B_CAPAN (Histone H2B OS=Capsicum annuum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 1.558e-43
Identity = 90/92 (97.83%), Postives = 92/92 (100.00%), Query Frame = -1
Query:  233 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 508
            SIETYKIYIFKVLKQVHPDIGISSK+MGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   54 SIETYKIYIFKVLKQVHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145          
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B7_ARATH (Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030 PE=1 SV=3)

HSP 1 Score: 175.637 bits (444), Expect = 2.657e-43
Identity = 91/102 (89.22%), Postives = 94/102 (92.16%), Query Frame = -1
Query:  233 GDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 538
            GD       KS+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA E+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   44 GDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145          
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B6_ARATH (Histone H2B.6 OS=Arabidopsis thaliana GN=H2B PE=1 SV=3)

HSP 1 Score: 175.637 bits (444), Expect = 2.657e-43
Identity = 91/102 (89.22%), Postives = 94/102 (92.16%), Query Frame = -1
Query:  233 GDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 538
            GD       KS+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA E+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   49 GDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150          
BLAST of CF835578 vs. ExPASy Swiss-Prot
Match: H2B3_ARATH (Histone H2B.3 OS=Arabidopsis thaliana GN=At2g28720 PE=1 SV=3)

HSP 1 Score: 175.637 bits (444), Expect = 2.657e-43
Identity = 90/92 (97.83%), Postives = 91/92 (98.91%), Query Frame = -1
Query:  233 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 508
            S ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEAS+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   60 STETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151          
The following BLAST results are available for this feature:
BLAST of CF835578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B_GOSHI1.079e-4491.26Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV... [more]
H2B3_SOLLC2.403e-4490.29Histone H2B.3 (Fragment) OS=Solanum lycopersicum G... [more]
H2B11_ARATH3.139e-4491.18Histone H2B.11 OS=Arabidopsis thaliana GN=At5g5991... [more]
H2B3_MEDTR6.992e-4489.32Probable histone H2B.3 OS=Medicago truncatula PE=3... [more]
H2B1_MEDTR6.992e-4489.32Probable histone H2B.1 OS=Medicago truncatula PE=3... [more]
H2B1_ARATH1.193e-4388.35Histone H2B.1 OS=Arabidopsis thaliana GN=At1g07790... [more]
H2B_CAPAN1.558e-4397.83Histone H2B OS=Capsicum annuum GN=HIS2B PE=2 SV=3[more]
H2B7_ARATH2.657e-4389.22Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030... [more]
H2B6_ARATH2.657e-4389.22Histone H2B.6 OS=Arabidopsis thaliana GN=H2B PE=1 ... [more]
H2B3_ARATH2.657e-4397.83Histone H2B.3 OS=Arabidopsis thaliana GN=At2g28720... [more]

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Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Properties
Property NameValue
Genbank descriptionUCRCS03_01I05_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01I05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835578 ID=CF835578|Name=CF835578|organism=Citrus sinensis|type=EST|length=784bp
TTTTTTTTTTCCCATTCATATTTCATTTTCATATTCTAACATAATGAACA
TGCACATCACCCGGATCAGGTCCAAATTTCTAGTACATCCAAACAAACCC
TAAAAATCCAACAAAGATTTAAAAACAAAAAACATAAAACGACTTCATCT
AGTAAAATTAAAGGCCTAAACTACTAACTACACAAATCACATAACACCCG
AATCCACCGACCGATGCAACAAACTTCCTTCAAGAAGAAGTAAACTTAGT
AACAGCTTTGGTACCCTCAGAAACAGCGTGCTTAGCCAGCTCACCAGGAA
GTACAAGTCTCACAGCGGTCTGAATTTCCCGAGATGTAATCGTCGGCTTC
TTATTGTACCTTGCAAGCCTAGAAGCTTCCTGGGCAAGCTTCTCGAAAAT
ATCGTTGATGAAACTGTTCATGATTCCCATGGCCTTGCTCGAGATTCCGA
TATCGGGATGTACCTGCTTCAGGACTTTGAAGATGTAAATCTTGTAAGTC
TCGATACTCTTCTTCGCGCGCTTCTTCTTCTTGTCGCCAGAGGCGGCTTC
TTTGGGAAGCTTCTTGCCGGCCTTCGGCTTCTTCTCCGCCGGCGCCTTCT
CGGCCACCGATGTCTTCTTCTCCTCCGCTGGCTTCTTCTCAGCCGGCTTC
TTCTCCGCCTTTGGTGCCATTAATTTCGGTTTGGTAAGGTAAGGCTTGGA
GATATTTTCTTTTCTTTTTTCTTCGAAAGGATAAGAGTAAAGGATGAAGT
GAGGACCGGAACTTACCGCCAGCTCTTCCACCCT
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