CF835612

Overview
NameCF835612
Unique NameCF835612
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length752
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835612 vs. ExPASy Swiss-Prot
Match: SMT1_ARATH (Cycloartenol-C-24-methyltransferase OS=Arabidopsis thaliana GN=SMT1 PE=2 SV=1)

HSP 1 Score: 397.897 bits (1021), Expect = 3.079e-110
Identity = 184/206 (89.32%), Postives = 198/206 (96.12%), Query Frame = 3
Query:  135 DLASGVGGKIDKTEVLSAVEKYEKYHVCYGGEEEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLQESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIARFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAYGCYKEIYRVLKPGQCFAAYEWCLTDAFD 752
            DLAS +GGKIDK++VL+AVEKYE+YHV +GG EEERKANYTDMVNKYYDL TSFYE+GWGESFHFA RWKGESL+ESIKRHEHFLALQLG++ GQKVLDVGCGIGGPLREIARFS++ VTGLNNNEYQITRGKELNR AGVDKTCNFVKADFMKMPFP+NSFDAVYAIEATCHAPDAYGCYKEIYRVLKPGQCFAAYEWC+TDAFD
Sbjct:    2 DLASNLGGKIDKSDVLTAVEKYEQYHVFHGGNEEERKANYTDMVNKYYDLATSFYEYGWGESFHFAQRWKGESLRESIKRHEHFLALQLGIQPGQKVLDVGCGIGGPLREIARFSNSVVTGLNNNEYQITRGKELNRLAGVDKTCNFVKADFMKMPFPENSFDAVYAIEATCHAPDAYGCYKEIYRVLKPGQCFAAYEWCMTDAFD 207          
BLAST of CF835612 vs. ExPASy Swiss-Prot
Match: SMT1_ORYSJ (Cycloartenol-C-24-methyltransferase 1 OS=Oryza sativa subsp. japonica GN=Smt1-1 PE=2 SV=1)

HSP 1 Score: 375.17 bits (962), Expect = 2.137e-103
Identity = 175/213 (82.16%), Postives = 191/213 (89.67%), Query Frame = 3
Query:  114 MSKAGAFDLASGVGGKIDKTEVLSAVEKYEKYHVCYGGEEEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLQESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIARFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAYGCYKEIYRVLKPGQCFAAYEWCLTDAFD 752
            MS++GA DLASG+GGKI K EV SAV++YEKYH  YGG+EE RK+NYTDMVNKYYDL TSFYE+GWGESFHFA RW GESL+ESIKRHEHFLALQLG+K G KVLDVGCGIGGPLREIA+FS  SVTGLNNNEYQITRGKELNR AGV  TC+FVKADFMKMPF DN+FDAVYAIEATCHAPD  GCYKEIYRVLKPGQCFA YEWC+TD ++
Sbjct:    1 MSRSGAMDLASGLGGKITKDEVKSAVDEYEKYHGYYGGKEEARKSNYTDMVNKYYDLATSFYEYGWGESFHFAHRWNGESLRESIKRHEHFLALQLGVKPGMKVLDVGCGIGGPLREIAKFSLASVTGLNNNEYQITRGKELNRVAGVSGTCDFVKADFMKMPFSDNTFDAVYAIEATCHAPDPVGCYKEIYRVLKPGQCFAVYEWCITDHYE 213          
BLAST of CF835612 vs. ExPASy Swiss-Prot
Match: SMT1_DICDI (Probable cycloartenol-C-24-methyltransferase 1 OS=Dictyostelium discoideum GN=smt1 PE=1 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 4.078e-62
Identity = 106/173 (61.27%), Postives = 130/173 (75.14%), Query Frame = 3
Query:  234 EERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLQESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIARFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAYGCYKEIYRVLKPGQCFAAYEWCLTDAFD 752
            + RK NYT MVN +YDL T FYEFGWG+SFHFA R K ES + SI RHE ++A QLGL  G KV+D+GCG+GGP+R IARFS  +V GLNNNEYQI RGK LN  AG+   C+F+KADFM +P  DN++D  Y IEATCHAPD  G YKE++R++KPG  F  YEW +T+ F+
Sbjct:   52 QARKNNYTHMVNTFYDLATDFYEFGWGQSFHFATRHKYESFEASIARHEMYMAHQLGLFPGMKVIDIGCGVGGPMRTIARFSGANVVGLNNNEYQIQRGKRLNESAGLSHLCSFIKADFMHVPVEDNTYDCAYQIEATCHAPDLVGLYKEVFRIVKPGGLFGGYEWIMTNKFN 224          
BLAST of CF835612 vs. ExPASy Swiss-Prot
Match: ERG6_YARLI (Sterol 24-C-methyltransferase OS=Yarrowia lipolytica GN=ERG6 PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 8.799e-57
Identity = 97/175 (55.43%), Postives = 126/175 (72.00%), Query Frame = 3
Query:  228 EEEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLQESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIARFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAYGCYKEIYRVLKPGQCFAAYEWCLTDAFD 752
            +E+ R  +Y  +   YY+LVT FYE+GWG SFHF+  +KGE+ +++  RHEH+LA ++G++ G KVLDVGCG+GGP REIARF+  ++ GLNNN+YQ+ RG   +   G      +VK DFM+M FPDNSFDAVYAIEAT HAP   G Y EI+RVLKPG  F  YEW +TD +D
Sbjct:   67 DEQGRIEDYAGLTKHYYNLVTDFYEYGWGSSFHFSRYYKGEAFRQATARHEHYLAYKMGIQPGMKVLDVGCGVGGPAREIARFTGANIVGLNNNDYQVERGTHYSEVQGFGDQVTYVKGDFMQMDFPDNSFDAVYAIEATVHAPVLEGVYSEIFRVLKPGGVFGVYEWVMTDEYD 241          
BLAST of CF835612 vs. ExPASy Swiss-Prot
Match: ERG6_ASHGO (Sterol 24-C-methyltransferase OS=Ashbya gossypii GN=ERG6 PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.960e-56
Identity = 101/174 (58.05%), Postives = 125/174 (71.84%), Query Frame = 3
Query:  231 EEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLQESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIARFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAYGCYKEIYRVLKPGQCFAAYEWCLTDAFD 752
            EE R A+Y +  + YY++VT FYE+GWG SFHF+  + GES   S+ RHEH+LA + G+ SG  VLDVGCG+GGP REIARF+   V GLNNN+YQI +GK  +R  G+    ++VK DFM M FPD +FD VYAIEATCHAP   G Y EIYRVLKPG  FA YEW +T+ +D
Sbjct:   60 EERRLADYNESTHSYYNVVTDFYEYGWGASFHFSRFYTGESFAMSMARHEHYLAHRAGITSGDLVLDVGCGVGGPAREIARFTGCRVVGLNNNDYQIMKGKHYSRKLGLGDQVSYVKGDFMNMDFPDATFDKVYAIEATCHAPSFEGVYGEIYRVLKPGGVFAVYEWVMTENYD 233          
BLAST of CF835612 vs. ExPASy Swiss-Prot
Match: ERG6_YEAST (Sterol 24-C-methyltransferase OS=Saccharomyces cerevisiae GN=ERG6 PE=1 SV=4)

HSP 1 Score: 217.238 bits (552), Expect = 7.449e-56
Identity = 99/174 (56.90%), Postives = 124/174 (71.26%), Query Frame = 3
Query:  231 EEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLQESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIARFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAYGCYKEIYRVLKPGQCFAAYEWCLTDAFD 752
            EE R  +Y +  + YY++VT FYE+GWG SFHF+  +KGES   SI RHEH+LA + G++ G  VLDVGCG+GGP REIARF+  +V GLNNN+YQI + K   +   +    +FVK DFMKM F +N+FD VYAIEATCHAP   G Y EIY+VLKPG  FA YEW +TD +D
Sbjct:   59 EERRLEDYNEATHSYYNVVTDFYEYGWGSSFHFSRFYKGESFAASIARHEHYLAYKAGIQRGDLVLDVGCGVGGPAREIARFTGCNVIGLNNNDYQIAKAKYYAKKYNLSDQMDFVKGDFMKMDFEENTFDKVYAIEATCHAPKLEGVYSEIYKVLKPGGTFAVYEWVMTDKYD 232          
BLAST of CF835612 vs. ExPASy Swiss-Prot
Match: ERG6_NEUCR (Sterol 24-C-methyltransferase OS=Neurospora crassa GN=B24P7.240 PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 4.087e-54
Identity = 98/175 (56.00%), Postives = 117/175 (66.86%), Query Frame = 3
Query:  228 EEEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLQESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIARFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAYGCYKEIYRVLKPGQCFAAYEWCLTDAFD 752
            + E R   Y  +   YY+L T  YE+GWG+ FHF     GES  ++I RHEH+LA Q+G+K   KVLDVGCG+GGP REIA+F+   +TGLNNN+YQI R        G+     FVK DFM+M FPDNSFDAVYAIEAT HAP   G Y EIYRVLKPG  F  YEW +TD +D
Sbjct:   67 DREARTKEYATLTRHYYNLATDIYEYGWGQCFHFCRYSPGESFYQAIARHEHYLAAQIGIKKDMKVLDVGCGVGGPAREIAKFTDAHITGLNNNDYQIDRATHYAVRDGLSGQLKFVKGDFMQMSFPDNSFDAVYAIEATVHAPKLEGVYGEIYRVLKPGGTFGVYEWLMTDNYD 241          
BLAST of CF835612 vs. ExPASy Swiss-Prot
Match: ERG6_KLULA (Sterol 24-C-methyltransferase OS=Kluyveromyces lactis GN=ERG6 PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 5.338e-54
Identity = 99/198 (50.00%), Postives = 133/198 (67.17%), Query Frame = 3
Query:  165 DKTEVLSAVEKYEKYHVCYGGEEEERKA--NYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLQESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIARFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAYGCYKEIYRVLKPGQCFAAYEWCLTDAFD 752
            +K+    AV KY K+       + ER+   +Y +  + YY++VT FYE+GWG SFHF+  +KGES   S+ RHEH+LA + G+K    +LDVGCG+GGP R I+RF+  ++ GLNNN+YQI +     +   +D   +FVK DFMKM F +N+FD+VYAIEATCHAP   G Y EIY+VLKPG  FA YEW +TD +D
Sbjct:   35 NKSAQTEAVAKYLKHWDGKTDADAERRRLEDYNESTHSYYNVVTDFYEYGWGSSFHFSRFFKGESFSASVARHEHYLAYKAGIKENDLILDVGCGVGGPARTISRFTGCNIIGLNNNDYQIQKANYYAKRDHLDSKLSFVKGDFMKMEFDENTFDSVYAIEATCHAPTFEGVYGEIYKVLKPGGTFAVYEWVMTDKYD 232          
BLAST of CF835612 vs. ExPASy Swiss-Prot
Match: ERG6_SCHPO (Sterol 24-C-methyltransferase OS=Schizosaccharomyces pombe GN=SPBC16E9.05 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.553e-53
Identity = 100/191 (52.36%), Postives = 128/191 (67.02%), Query Frame = 3
Query:  192 EKYEKYHVCYGGEEEERKAN----YTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLQESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIARFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAYGCYKEIYRVLKPGQCFAAYEWCLTDAFD 752
            E +E +   +  E EE +A     Y  +VN YYDL T  YE+GW +SFHF+  +KGE+  +SI RHEH+LA ++G+K G +VLDVGCG+GGP REI  F+  ++ GLNNN+YQI+R         +DK   FVK DFM MPF DN+FD VYAIEAT HAP   G Y EI+RVLKPG  F  YEW ++D +D
Sbjct:   47 EYFEFWDRNHENESEEDRARRIDGYKSVVNSYYDLATDLYEYGWSQSFHFSRFYKGEAFAQSIARHEHYLAYRMGIKPGSRVLDVGCGVGGPAREITEFTGCNLVGLNNNDYQISRCNNYAVKRNLDKKQVFVKGDFMHMPFEDNTFDYVYAIEATVHAPSLEGVYGEIFRVLKPGGVFGVYEWVMSDDYD 237          
BLAST of CF835612 vs. ExPASy Swiss-Prot
Match: ERG6_DEBHA (Sterol 24-C-methyltransferase OS=Debaryomyces hansenii GN=ERG6 PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.007e-52
Identity = 94/175 (53.71%), Postives = 123/175 (70.29%), Query Frame = 3
Query:  228 EEEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLQESIKRHEHFLALQLGLKSGQKVLDVGCGIGGPLREIARFSSTSVTGLNNNEYQITRGKELNRFAGVDKTCNFVKADFMKMPFPDNSFDAVYAIEATCHAPDAYGCYKEIYRVLKPGQCFAAYEWCLTDAFD 752
            +E++R ++Y+++   YY+LVT FYE+GWG SFHF+  + GE+ +++  RHEHFLA ++ +    KVLDVGCG+GGP REI RF+  S+ GLNNN+YQI R     R   +D   +FVK DFM+M F   SFDAVYAIEAT HAP   G Y EIY+VLKPG  F  YEW +TD +D
Sbjct:   62 DEDKRLSDYSNLTAHYYNLVTDFYEYGWGSSFHFSRYYTGEAFRQATARHEHFLAHKMQINENMKVLDVGCGVGGPAREICRFTDCSIVGLNNNDYQIERANHYARKYKLDDKLSFVKGDFMQMDFEAESFDAVYAIEATVHAPVLEGVYSEIYKVLKPGGVFGVYEWVMTDKYD 236          
The following BLAST results are available for this feature:
BLAST of CF835612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
SMT1_ARATH3.079e-11089.32Cycloartenol-C-24-methyltransferase OS=Arabidopsis... [more]
SMT1_ORYSJ2.137e-10382.16Cycloartenol-C-24-methyltransferase 1 OS=Oryza sat... [more]
SMT1_DICDI4.078e-6261.27Probable cycloartenol-C-24-methyltransferase 1 OS=... [more]
ERG6_YARLI8.799e-5755.43Sterol 24-C-methyltransferase OS=Yarrowia lipolyti... [more]
ERG6_ASHGO1.960e-5658.05Sterol 24-C-methyltransferase OS=Ashbya gossypii G... [more]
ERG6_YEAST7.449e-5656.90Sterol 24-C-methyltransferase OS=Saccharomyces cer... [more]
ERG6_NEUCR4.087e-5456.00Sterol 24-C-methyltransferase OS=Neurospora crassa... [more]
ERG6_KLULA5.338e-5450.00Sterol 24-C-methyltransferase OS=Kluyveromyces lac... [more]
ERG6_SCHPO1.553e-5352.36Sterol 24-C-methyltransferase OS=Schizosaccharomyc... [more]
ERG6_DEBHA1.007e-5253.71Sterol 24-C-methyltransferase OS=Debaryomyces hans... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01J06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01J06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835612 ID=CF835612; Name=CF835612; organism=Citrus sinensis; type=EST; length=752bp
ACGTTAGATTCCAAAGCTCCTTCAGTCTTCACACACAACAGACACACACC
TTCTCTCTGTTCCGAATTCTCCTTCTCTTTTTGCGGCTCTTTCAACATCG
GTATATTGCGAGAATGTCGAAGGCTGGAGCTTTTGATTTGGCTTCTGGAG
TGGGCGGAAAGATTGATAAAACCGAAGTGCTCTCCGCCGTCGAAAAGTAT
GAGAAGTATCATGTCTGTTATGGAGGTGAAGAGGAAGAGAGAAAAGCTAA
CTACACTGACATGGTTAATAAATATTATGATCTTGTTACCAGCTTTTATG
AGTTTGGCTGGGGGGAGTCATTCCATTTTGCACCAAGATGGAAAGGAGAG
TCTCTTCAGGAGAGTATCAAGCGACATGAGCACTTCCTTGCTTTGCAACT
TGGCCTTAAATCTGGGCAGAAGGTTTTGGATGTTGGATGTGGAATTGGTG
GACCCTTGAGAGAAATTGCTCGATTCAGCTCAACATCAGTTACTGGGTTG
AACAACAATGAGTATCAGATAACAAGAGGAAAGGAATTAAACCGCTTTGC
AGGAGTGGACAAGACCTGCAACTTTGTAAAGGCTGACTTCATGAAAATGC
CATTTCCTGACAATAGTTTTGATGCTGTGTATGCAATTGAAGCAACCTGT
CATGCTCCAGATGCATATGGATGCTACAAAGAGATTTACAGAGTATTAAA
GCCTGGCCAATGTTTTGCTGCATATGAATGGTGCTTGACTGATGCGTTTG
AT
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