CF835627

Overview
NameCF835627
Unique NameCF835627
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length810
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835627_ssr416 microsatellite CF835627_ssr416:416..427. BLAST: Citrus ESTs to Populus V2 proteins
CF835627_ssr534 microsatellite CF835627_ssr534:534..545. BLAST: Citrus ESTs to Populus V2 proteins
CF835627_ssr578 microsatellite CF835627_ssr578:578..589. BLAST: Citrus ESTs to Populus V2 proteins
CF835627_ssr597 microsatellite CF835627_ssr597:597..611. BLAST: Citrus ESTs to Populus V2 proteins
Homology
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BLAST of CF835627 vs. ExPASy Swiss-Prot
Match: HSFC1_ARATH (Heat stress transcription factor C-1 OS=Arabidopsis thaliana GN=HSFC1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.613e-14
Identity = 38/59 (64.41%), Postives = 49/59 (83.05%), Query Frame = -1 
Query:  634 DEELQGMNKRLEATERRPEQMMAFLYKVVEDPDLLPRIIMEKESTTNRNNYYLGDKKRR 810
            + E+Q MN+R+EATE+RPEQMMAFLYKVVEDPDLLPR+++EKE T  +    + DKK+R
Sbjct:  138 EAEIQRMNRRIEATEKRPEQMMAFLYKVVEDPDLLPRMMLEKERT--KQQQQVSDKKKR 194
The following BLAST results are available for this feature:
BLAST of CF835627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
HSFC1_ARATH1.613e-1464.41Heat stress transcription factor C-1 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_01J17_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01J17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835627 ID=CF835627; Name=CF835627; organism=Citrus sinensis; type=EST; length=810bp
TTTTTTTTTTTTTTTACATAAAAACATATTTATTCACTCTCTCCCCTTAA
GGTCGGCCAAAAAAAATAATAGTAATAATAAAACATTAAAAAATATTAAT
TACCAAAAAGCGAAAAGAAAAAAAAAATTAATACAAAGATAGAATCCAAG
ATAAATCTCGTGATAAGCAAACTAAAAACCGCCTCCTAGCAATGAAAATG
GATAAGGTGGCGTTGGCGGACGAGACTCTACCCCCGTTACCATTTCTCCA
AAATAACCCATTTGCCCATTAGTACTAGTACCACTACTAGTACTATTCCT
CGCCGTCGCCGGAATCGCCGATACCGGACTAGGAATGGCGGCGCAGCCAT
AACTATTCATCACTTGCCTGCTTTGCCCTAATAACCAGCCAGAACTTGAA
ACACTGTAATTATTGTTATTATTATTACTATCTGGTGACGGAGATGACTG
ACAAAAGTTGTTACTGTTGTTATTATTACTATTATCGAACCCAGAATCTG
GGGAAGAAGATGAGATCACCCCTATGTTGCCCACTTCTTCTTCTTCAGAT
TTTATCGAGCTCGAAGCTGCCATGCCCGAAGAAGAAGAATTAGAAGGCTG
CTGCTGCTGCTGTGATGACGACGAGATCATCAAGCGTCTCTTTTTGTCCC
CAAGATAATAATTATTCCTGTTGGTGGTGCTTTCTTTTTCCATGATGATG
CGAGGAAGCAAGTCGGGATCTTCAACGACTTTGTAAAGAAACGCCATCAT
TTGTTCAGGGCGCCTCTCTGTTGCTTCCAGTCTCTTGTTCATGCCCTGAA
GCTCTTCATC
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