CF835647

Overview
NameCF835647
Unique NameCF835647
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length567
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835647_ssr115 microsatellite CF835647_ssr115:115..126. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1268 contig Csv1_Contig1268:152..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835647 vs. ExPASy Swiss-Prot
Match: PR4A_TOBAC (Pathogenesis-related protein PR-4A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 3.607e-50
Identity = 89/123 (72.36%), Postives = 99/123 (80.49%), Query Frame = -1
Query:  187 AQSAFNVRARYHFFPPEQIGWDLTAARAFCATWDASKPLAWGQKYGWTAFCHLGGPIGQAACGRCLRVPNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDPNGIGYQQGFLSVSYEFVNCND 555
            AQSA NVR+ YH + P+ I WDL AA AFCATWDA KPLAW QKYGWTAFC   GP GQ +CGRCLRV N+GTG Q  VRIVDQC+NGGLDLD  VF +LD NG+GYQQG L+V+YEFVNCND
Sbjct:   25 AQSATNVRSTYHLYNPQNINWDLRAASAFCATWDADKPLAWRQKYGWTAFCGPAGPRGQDSCGRCLRVTNTGTGTQTTVRIVDQCSNGGLDLDVNVFNQLDTNGVGYQQGHLTVNYEFVNCND 147          
BLAST of CF835647 vs. ExPASy Swiss-Prot
Match: PR4B_TOBAC (Pathogenesis-related protein PR-4B OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.050e-49
Identity = 89/123 (72.36%), Postives = 98/123 (79.67%), Query Frame = -1
Query:  187 AQSAFNVRARYHFFPPEQIGWDLTAARAFCATWDASKPLAWGQKYGWTAFCHLGGPIGQAACGRCLRVPNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDPNGIGYQQGFLSVSYEFVNCND 555
            AQSA NVR+ YH + P+ I WDL AA AFCATWDA KPLAW QKYGWTAFC   GP GQ +CGRCLRV N+GTG Q  VRIVDQC+NGGLDLD  VF +LD NG+GYQQG L V+YEFVNCND
Sbjct:   25 AQSATNVRSTYHLYNPQNINWDLRAASAFCATWDADKPLAWRQKYGWTAFCGPAGPRGQDSCGRCLRVTNTGTGTQATVRIVDQCSNGGLDLDVNVFNQLDTNGLGYQQGHLIVNYEFVNCND 147          
BLAST of CF835647 vs. ExPASy Swiss-Prot
Match: PRP2_SOLLC (Pathogenesis-related protein P2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 8.316e-47
Identity = 82/121 (67.77%), Postives = 95/121 (78.51%), Query Frame = -1
Query:  193 AQSAFNVRARYHFFPPEQIGWDLTAARAFCATWDASKPLAWGQKYGWTAFCHLGGPIGQAACGRCLRVPNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDPNGIGYQQGFLSVSYEFVNC 555
            AQSA NVRA YH + P+ I WDL  A  +CATWDA KPL W ++YGWTAFC   GP GQA+CGRCLRV N+GTG Q+ VRIVDQC NGGLDLD  VF +LD NG+GYQ+G L+V+YEFVNC
Sbjct:   23 AQSATNVRATYHLYNPQNINWDLRTASVYCATWDADKPLEWRRRYGWTAFCGPAGPTGQASCGRCLRVTNTGTGTQETVRIVDQCRNGGLDLDVNVFNRLDTNGLGYQRGNLNVNYEFVNC 143          
BLAST of CF835647 vs. ExPASy Swiss-Prot
Match: WIN2_SOLTU (Wound-induced protein WIN2 OS=Solanum tuberosum GN=WIN2 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 6.590e-44
Identity = 78/126 (61.90%), Postives = 96/126 (76.19%), Query Frame = -1
Query:  187 PGFAQSAFNVRARYHFFPPEQIGWDLTAARAFCATWDASKPLAWGQKYGWTAFCHLGGPIGQAACGRCLRVPNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDPNGIGYQQGFLSVSYEFVNCND 564
            PG   SA NVRA YH + P+ +GWDL A  A+C+TWDA+KP AW  KYGWTAFC   GP G+ +CG+CLRV N+ TGAQ  VRIVDQC+NGGLDLD  VF+++D +G+G QQG L V+Y+FVNC D
Sbjct:   73 PGQGGSAQNVRATYHIYNPQNVGWDLNAVSAYCSTWDANKPYAWRSKYGWTAFCGPVGPRGRDSCGKCLRVTNTRTGAQTTVRIVDQCSNGGLDLDINVFQQIDTDGVGNQQGHLIVNYQFVNCGD 198          
BLAST of CF835647 vs. ExPASy Swiss-Prot
Match: WHW2_WHEAT (Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.468e-43
Identity = 85/130 (65.38%), Postives = 96/130 (73.85%), Query Frame = -1
Query:  187 APGFAQSAFNVRARYHFFPPEQIGWDL--TAARAFCATWDASKPLAWGQKYGWTAFCHLGGPIGQAACGRCLRVPNSGTGAQQIVRIVDQCANGGLDLD-EGVFKKLDPNGIGYQQGFLSVSYEFVNCND 567
            A   AQ A NVRA YH++ P Q  WDL   A  A+CATWDASKPL+W  KYGWTAFC   G  GQAACG+CLRV N  TGAQ   RIVDQCANGGLDLD + VF K+D NGIGYQQG L+V+Y+FV+C D
Sbjct:   19 AAATAQQATNVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGAHGQAACGKCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD 148          
BLAST of CF835647 vs. ExPASy Swiss-Prot
Match: BARW_HORVU (Barwin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 3.270e-43
Identity = 83/125 (66.40%), Postives = 95/125 (76.00%), Query Frame = -1
Query:  187 QSAFNVRARYHFFPPEQIGWDL--TAARAFCATWDASKPLAWGQKYGWTAFCHLGGPIGQAACGRCLRVPNSGTGAQQIVRIVDQCANGGLDLD-EGVFKKLDPNGIGYQQGFLSVSYEFVNCND 552
            Q A +VRA YH++ P Q  WDL   A  A+CATWDASKPL+W  KYGWTAFC   GP GQAACG+CLRV N  TGAQ   RIVDQCANGGLDLD + VF K+D NGIGYQQG L+V+Y+FV+C D
Sbjct:    1 QQANDVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGPRGQAACGKCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD 125          
BLAST of CF835647 vs. ExPASy Swiss-Prot
Match: WHW1_WHEAT (Wheatwin-1 OS=Triticum aestivum GN=PR4A PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 9.515e-43
Identity = 83/130 (63.85%), Postives = 96/130 (73.85%), Query Frame = -1
Query:  187 APGFAQSAFNVRARYHFFPPEQIGWDL--TAARAFCATWDASKPLAWGQKYGWTAFCHLGGPIGQAACGRCLRVPNSGTGAQQIVRIVDQCANGGLDLD-EGVFKKLDPNGIGYQQGFLSVSYEFVNCND 567
            A   AQ A NVRA YH++ P Q  WDL   A  A+CATWDASKPL+W  KYGWTAFC   G  GQA+CG+CL+V N  TGAQ   RIVDQCANGGLDLD + VF K+D NGIGYQQG L+V+Y+FV+C D
Sbjct:   17 AAATAQQATNVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGAHGQASCGKCLQVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD 146          
BLAST of CF835647 vs. ExPASy Swiss-Prot
Match: HEVL_ARATH (Hevein-like protein OS=Arabidopsis thaliana GN=HEL PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 6.168e-42
Identity = 76/125 (60.80%), Postives = 91/125 (72.80%), Query Frame = -1
Query:  187 GFAQSAFNVRARYHFFPPEQIGWDLTAARAFCATWDASKPLAWGQKYGWTAFCHLGGPIGQAACGRCLRVPNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDPNGIGYQQGFLSVSYEFVNCND 561
            G  +SA NVRA YHF+ P Q  WDL A  A+C+TWDA KP AW  KYGWTAFC   GP GQA+CG+CLRV N+ T A   VRIVDQC+NGGLDLD  +F ++D +G GYQQG L V Y+FV+C +
Sbjct:   69 GPGESASNVRATYHFYNPAQNNWDLRAVSAYCSTWDADKPYAWRSKYGWTAFCGPAGPRGQASCGKCLRVKNTRTNAAVTVRIVDQCSNGGLDLDVAMFNQIDTDGFGYQQGHLIVDYQFVDCGN 193          
BLAST of CF835647 vs. ExPASy Swiss-Prot
Match: WIN1_SOLTU (Wound-induced protein WIN1 OS=Solanum tuberosum GN=WIN1 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.052e-41
Identity = 74/121 (61.16%), Postives = 94/121 (77.69%), Query Frame = -1
Query:  187 SAFNVRARYHFFPPEQIGWDLTAARAFCATWDASKPLAWGQKYGWTAFCHLGGPIGQAACGRCLRVPNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDPNGIGYQQGFLSVSYEFVNCND 549
            SA NVRA YH + P+ +GWDL A  A+C+TWDA+KPL+W +KYGWTAFC   GP G+ +CG+CLRV N+ TGAQ  VRIVDQC+NGGLDLD  VF+++D +G G  QG L V+Y+FV+C D
Sbjct:   79 SAQNVRATYHIYNPQNVGWDLNAVSAYCSTWDANKPLSWRKKYGWTAFCGPVGPRGRDSCGKCLRVTNTRTGAQTTVRIVDQCSNGGLDLDVNVFRQIDTDGNGNHQGHLIVNYQFVDCGD 199          
BLAST of CF835647 vs. ExPASy Swiss-Prot
Match: HEVE_HEVBR (Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 4.420e-40
Identity = 73/130 (56.15%), Postives = 99/130 (76.15%), Query Frame = -1
Query:  163 SAFNVRARYHFFPPEQIGWDLTAARAFCATWDASKPLAWGQKYGWTAFCHLGGPIGQAACGRCLRVPNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDPNGIGYQQGFLSVSYEFVNCND-*SPIYNSM 549
            SA NV A YH +  +  GWDL AA A+C+TWDA+KP +W  KYGWTAFC   G  GQ++CG+CL V N+GTGA+  VRIVDQC+NGGLDLD  VF++LD +G GY++G ++V+Y+FV+C D  +P+++ M
Sbjct:   69 SASNVLATYHLYNSQDHGWDLNAASAYCSTWDANKPYSWRSKYGWTAFCGPVGAHGQSSCGKCLSVTNTGTGAKTTVRIVDQCSNGGLDLDVNVFRQLDTDGKGYERGHITVNYQFVDCGDSFNPLFSVM 198          
The following BLAST results are available for this feature:
BLAST of CF835647 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PR4A_TOBAC3.607e-5072.36Pathogenesis-related protein PR-4A OS=Nicotiana ta... [more]
PR4B_TOBAC1.050e-4972.36Pathogenesis-related protein PR-4B OS=Nicotiana ta... [more]
PRP2_SOLLC8.316e-4767.77Pathogenesis-related protein P2 OS=Solanum lycoper... [more]
WIN2_SOLTU6.590e-4461.90Wound-induced protein WIN2 OS=Solanum tuberosum GN... [more]
WHW2_WHEAT1.468e-4365.38Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1[more]
BARW_HORVU3.270e-4366.40Barwin OS=Hordeum vulgare PE=1 SV=1[more]
WHW1_WHEAT9.515e-4363.85Wheatwin-1 OS=Triticum aestivum GN=PR4A PE=1 SV=1[more]
HEVL_ARATH6.168e-4260.80Hevein-like protein OS=Arabidopsis thaliana GN=HEL... [more]
WIN1_SOLTU1.052e-4161.16Wound-induced protein WIN1 OS=Solanum tuberosum GN... [more]
HEVE_HEVBR4.420e-4056.15Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01K06_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01K06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835647 ID=CF835647; Name=CF835647; organism=Citrus sinensis; type=EST; length=567bp
TTTTTTAAAGGGACCTTTAAAGGAACCTTTTATTACATAACTGGAGGGCC
CCCCCTTACTTCTTGATACTTCATCAAAAGTTTATTTTATTTATGAACTA
AATATATAGAGGGATAATTAATTAATAAATTAACCCTATTACAGCAATAA
GCTTCCATCGATCATGGAATTATAAATGGGGCTTTAATCATTGCAGTTCA
CAAACTCGTAGCTGACAGAAAGGAAGCCTTGTTGATAGCCTATTCCATTG
GGGTCCAATTTCTTGAACACTCCTTCGTCCAAATCTAACCCCCCATTGGC
ACACTGATCAACAATTCTCACAATTTGTTGGGCTCCTGTACCACTGTTTG
GGACCCTTAAGCACCTGCCACAAGCAGCTTGTCCAATGGGTCCGCCCAAA
TGACAAAAAGCGGTCCACCCATATTTCTGGCCCCAGGCCAAGGGCTTGCT
GGCATCCCATGTTGCGCAAAAAGCCCTCGCTGCCGTCAAGTCCCATCCAA
TTTGCTCAGGGGGGAAAAAATGATACCTGGCTCTCACATTAAAAGCACTT
TGGGCAAAACCAGGGGC
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