CF835652

Overview
NameCF835652
Unique NameCF835652
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835652 vs. ExPASy Swiss-Prot
Match: GGPPS_CATRO (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 6.683e-66
Identity = 126/177 (71.19%), Postives = 147/177 (83.05%), Query Frame = -2
Query:  153 YAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQVVDINSEGRKDLGIEHLEFIHEHKTAALLEXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAAPLIALANYIAYRQN 683
            +AFEHIA  TKGVS  RIVR + ELAK IG++GLVAGQVVD+ SEG  D+G+EHLEFIH HKTAALLE             D ++ KLR FARCIGLLFQVVDDILD+TKSS+ELGKTAGKDLVADK+TYPKLLGI++S++ A+KLN++AQ+QL+EFD EKAAPLIALANYIAYR N
Sbjct:  181 FAFEHIATATKGVSSERIVRVVGELAKCIGSEGLVAGQVVDVCSEGIADVGLEHLEFIHIHKTAALLEGSVVLGAIVGGANDEQISKLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIDKSREFAEKLNREAQEQLAEFDPEKAAPLIALANYIAYRDN 357          
BLAST of CF835652 vs. ExPASy Swiss-Prot
Match: GGPPS_HEVBR (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.646e-64
Identity = 130/177 (73.45%), Postives = 148/177 (83.62%), Query Frame = -2
Query:  153 YAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQVVDINSEGRKDLGIEHLEFIHEHKTAALLEXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAAPLIALANYIAYRQN 683
            +AFEHIAV T  VS ARIVRA+ ELAK IGA+GLVAGQVVDINSEG  ++ +E LEFIH HKTA LLE           GTD EVEKLR +AR IGLLFQVVDDILD+TKSS+ELGKTAGKDLVADK+TYPKLLGIE+S++ A+KLNK+AQ+QL+ FD EKAAPLIALANYIA+RQN
Sbjct:  194 FAFEHIAVSTLNVSSARIVRAVGELAKAIGAEGLVAGQVVDINSEGSSEVDLEKLEFIHIHKTAKLLEGAVVLGAILGGGTDEEVEKLRKYARDIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIEKSREFAEKLNKEAQEQLAGFDPEKAAPLIALANYIAHRQN 370          
BLAST of CF835652 vs. ExPASy Swiss-Prot
Match: GGPP1_ARATH (Geranylgeranyl pyrophosphate synthetase 1, chloroplastic OS=Arabidopsis thaliana GN=GGPS1 PE=2 SV=2)

HSP 1 Score: 238.039 bits (606), Expect = 3.432e-62
Identity = 122/181 (67.40%), Postives = 148/181 (81.77%), Query Frame = -2
Query:  153 YAFEHIAVCTKG--VSPARIVRAIAELAKYIGADGLVAGQVVDINSEGR--KDLGIEHLEFIHEHKTAALLEXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAAPLIALANYIAYRQN 683
            +AFEH+A  T    VSP R+VRA+ ELAK IG +GLVAGQVVDI+SEG    D+G+EHLEFIH HKTAALLE           G+D+E+E+LR FARCIGLLFQVVDDILD+TKSSKELGKTAGKDL+ADKLTYPK++G+E+S++ A+KLN++A+ QL  FD +K APL+ALANYIAYRQN
Sbjct:  191 FAFEHLASATSSDVVSPVRVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNDVGLEHLEFIHLHKTAALLEASAVLGAIVGGGSDDEIERLRKFARCIGLLFQVVDDILDVTKSSKELGKTAGKDLIADKLTYPKIMGLEKSREFAEKLNREARDQLLGFDSDKVAPLLALANYIAYRQN 371          
BLAST of CF835652 vs. ExPASy Swiss-Prot
Match: GGPPS_SINAL (Geranylgeranyl pyrophosphate synthetase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.480e-60
Identity = 120/180 (66.67%), Postives = 146/180 (81.11%), Query Frame = -2
Query:  153 YAFEHIAVCTKG-VSPARIVRAIAELAKYIGADGLVAGQVVDINSEGR--KDLGIEHLEFIHEHKTAALLEXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAAPLIALANYIAYRQN 683
            +AFEH+A  T   VSPAR+VRA+ ELAK IG +GLVAGQVVDI+SEG    ++G+EHL+FIH HKTAALLE           G+D E+E+LR FARCIGLLFQVVDDILD+TKSS+ELGKTAGKDL+ADKLTYPKL+G+E+S++ A+KLN +A+ QL  FD +K APL+ALANYIA RQN
Sbjct:  187 FAFEHLASATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLIADKLTYPKLMGLEKSREFAEKLNTEARDQLLGFDSDKVAPLLALANYIANRQN 366          
BLAST of CF835652 vs. ExPASy Swiss-Prot
Match: GGPPS_CAPAN (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 7.913e-59
Identity = 119/177 (67.23%), Postives = 138/177 (77.97%), Query Frame = -2
Query:  153 YAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQVVDINSEGRKDLGIEHLEFIHEHKTAALLEXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAAPLIALANYIAYRQN 683
            +AFEHI   T GV+P+RIV A+AELAK IG +GLVAGQV DI   G   + +E LEFIH HKTAALLE           GT+ EVEKLR FARCIGLLFQVVDDILD+TKSS+ELGKTAGKDLV DK TYPKLLG+E++K+ A +LN++A+QQL  FD  KAAPLIALA+YIAYR N
Sbjct:  193 FAFEHIVNSTAGVTPSRIVGAVAELAKSIGTEGLVAGQVADIKCTGNASVSLETLEFIHVHKTAALLESSVVLGAILGGGTNVEVEKLRRFARCIGLLFQVVDDILDVTKSSEELGKTAGKDLVVDKTTYPKLLGLEKAKEFAAELNREAKQQLEGFDSRKAAPLIALADYIAYRDN 369          
BLAST of CF835652 vs. ExPASy Swiss-Prot
Match: GGPP3_ARATH (Geranylgeranyl pyrophosphate synthetase 3, chloroplastic OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.307e-53
Identity = 108/179 (60.34%), Postives = 140/179 (78.21%), Query Frame = -2
Query:  153 AFEHIAVCTKG-VSPARIVRAIAELAKYIGADGLVAGQVVDINSE--GRKDLGIEHLEFIHEHKTAALLEXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAAPLIALANYIAYRQN 680
            AFEH+ V + G V+P R++RA+ ELA+ IG  GLVAGQ++D+ SE      +G+EHLEFIH HKTAALLE           GT+ E+EKLR +ARCIGLLFQVVDDILD+TKS++ELGKTAGKD++A KLTYP+L+G+E SK++A+KL ++A++QL  FD  KAAPL+ALA+YIA R N
Sbjct:  182 AFEHMTVVSSGLVAPERMIRAVVELARAIGTTGLVAGQMIDLASERLNPDKVGLEHLEFIHLHKTAALLEAAAVLGVIMGGGTEEEIEKLRKYARCIGLLFQVVDDILDVTKSTEELGKTAGKDVMAGKLTYPRLIGLERSKEVAEKLRREAEEQLLGFDPSKAAPLVALASYIACRHN 360          
BLAST of CF835652 vs. ExPASy Swiss-Prot
Match: GGPP4_ARATH (Geranylgeranyl pyrophosphate synthetase 4 OS=Arabidopsis thaliana GN=GGPP4 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.332e-49
Identity = 103/178 (57.87%), Postives = 130/178 (73.03%), Query Frame = -2
Query:  153 AFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQVVDINSEG--RKDLGIEHLEFIHEHKTAALLEXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAAPLIALANYIAYRQN 680
            AFEH+      VS  ++VRA+ ELAK IG  GLVAGQ  D++SEG  + D+G+E LE+IH HKT +LLE           GT+ E+EK+R FARCIGLLFQVVDDILD TKSS+ELGKTAGKD VA KLTYPK++G+E+SK+  +KL +DA++ L  FD +K  PLIAL N+IA R +
Sbjct:  197 AFEHLTEAD--VSSKKMVRAVKELAKSIGTKGLVAGQAKDLSSEGLEQNDVGLEDLEYIHVHKTGSLLEASAVIGAVIGGGTEKEIEKVRNFARCIGLLFQVVDDILDETKSSEELGKTAGKDKVAGKLTYPKVIGVEKSKEFVEKLKRDAREHLQGFDSDKVKPLIALTNFIANRNH 372          
BLAST of CF835652 vs. ExPASy Swiss-Prot
Match: GGPP2_ARATH (Geranylgeranyl pyrophosphate synthetase 2 OS=Arabidopsis thaliana GN=GGPP2 PE=2 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 1.654e-48
Identity = 104/176 (59.09%), Postives = 127/176 (72.16%), Query Frame = -2
Query:  159 AFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQVVDINSEGR--KDLGIEHLEFIHEHKTAALLEXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAAPLIALANYIAYR 680
            AFEH+   T  +S  R+V A+ ELA+ IG  GLVAGQ +DI+SEG    ++G+EHLEFIH HKTA LLE           G+D E+E +R FARCIGLLFQVVDDILD TKSS+ELGKTAGKD +A KLTYPKL+G+E+SK+   +L KDA+Q L  F  EK APL+AL  +IA R
Sbjct:  201 AFEHMT--TAEISSERMVWAVRELARSIGTRGLVAGQAMDISSEGLDLNEVGLEHLEFIHVHKTAVLLETAAVLGAIIGGGSDEEIESVRKFARCIGLLFQVVDDILDETKSSEELGKTAGKDQLAGKLTYPKLIGLEKSKEFVKRLTKDARQHLQGFSSEKVAPLVALTTFIANR 374          
BLAST of CF835652 vs. ExPASy Swiss-Prot
Match: GGPP6_ARATH (Geranylgeranyl pyrophosphate synthetase 6, mitochondrial OS=Arabidopsis thaliana GN=GGPP6 PE=2 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 6.087e-43
Identity = 83/176 (47.16%), Postives = 126/176 (71.59%), Query Frame = -2
Query:  153 IAVCTKGVSPARIVRAIAELAKYIGADGLVAGQVVDINSEG----RKDLGIEHLEFIHEHKTAALLEXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAAPLIALANYIAYRQN 668
            +A  + GV+  R++RA+ E+A+ +G +GLVAGQ  D+  E      +D  + +LE +H HKTA L+E           G+D E+E+L+++ARC+GL+FQV+DD+LD TKSS+ELGKTAGKDL+  KLTYPK++G++ +++ A +LN++AQ+ L  FD +K  PL++LA+YI  RQN
Sbjct:  161 LASTSLGVTSERVLRAVQEMARAVGTEGLVAGQAADLAGERMSFKNEDDELRYLELMHVHKTAVLVEAAAVVGAIMGGGSDEEIERLKSYARCVGLMFQVMDDVLDETKSSEELGKTAGKDLITGKLTYPKVMGVDNAREYAKRLNREAQEHLQGFDSDKVVPLLSLADYIVKRQN 336          
BLAST of CF835652 vs. ExPASy Swiss-Prot
Match: CRTE_CYAPA (Geranylgeranyl pyrophosphate synthetase homolog OS=Cyanophora paradoxa GN=crtE PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.739e-35
Identity = 77/177 (43.50%), Postives = 112/177 (63.28%), Query Frame = -2
Query:  153 YAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQVVDINSEGRKDLGIEHLEFIHEHKTAALLEXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAAPLIALANYIAYRQN 683
            YAFE IA  TK V    IV+ IA++A  +   GLV GQ++D++SEG+ D  +E L FIH HKT ALLE             + ++ +   +A+ IGL FQ++DD+LD+  + ++LGK+ GKDL   K TYP   G+EES K A+ L ++A++++  FD  KA PLIA+A++I  R N
Sbjct:  125 YAFEFIATQTKNVPADLIVKVIAQVAHSVTTSGLVGGQIIDLSSEGKSDTTLETLNFIHIHKTGALLEAAVLSGALLAGAKEKDMNRFLRYAQNIGLAFQIIDDVLDIISTEEKLGKSIGKDLKTQKATYPSFWGVEESIKQAELLVEEAKEEILYFD-NKAIPLIAIADFIVNRNN 300          
The following BLAST results are available for this feature:
BLAST of CF835652 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
GGPPS_CATRO6.683e-6671.19Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_HEVBR1.646e-6473.45Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP1_ARATH3.432e-6267.40Geranylgeranyl pyrophosphate synthetase 1, chlorop... [more]
GGPPS_SINAL5.480e-6066.67Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_CAPAN7.913e-5967.23Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP3_ARATH1.307e-5360.34Geranylgeranyl pyrophosphate synthetase 3, chlorop... [more]
GGPP4_ARATH3.332e-4957.87Geranylgeranyl pyrophosphate synthetase 4 OS=Arabi... [more]
GGPP2_ARATH1.654e-4859.09Geranylgeranyl pyrophosphate synthetase 2 OS=Arabi... [more]
GGPP6_ARATH6.087e-4347.16Geranylgeranyl pyrophosphate synthetase 6, mitocho... [more]
CRTE_CYAPA2.739e-3543.50Geranylgeranyl pyrophosphate synthetase homolog OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01K09_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01K09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835652 ID=CF835652; Name=CF835652; organism=Citrus sinensis; type=EST; length=684bp
AATTGGAATAANNATGGGTGAATAAGAAGAATGTTTATAAAATATTAAAA
AAGTTGANNAGTTATTCTNAAGATGAGGTAAGTTTAAATATACAATTACA
AATNAAAGGAAACCCAATTCCCCTGGAGGCATTAACCCAATTAAAAACAT
CAATTCTGCCTATAAGCAATATAGTTAGCCAAAGCAATCAAAGGCGCGGC
CTTTTCCTGATCAAATTCCGACAATTGCTGTTGAGCATCTTTATTCAACT
TGTCAGCTAACTTCTTCGATTCTTCGATCCCCAGCAACTTGGGATACGTT
AACTTATCGGCCACCAAATCTTTGCCGGCAGTCTTCCCCAATTCTTTTGA
CGACTTGGTCAGATCGAGGATATCATCAACTACTTGAAACAAAAGCCCAA
TACAGCGAGCAAAAGTTCTCAGTTTCTCGACTTCGTTGTCAGTTCCGCCG
CCCAATATGGCTCCAATAACAACAGCAGCCTCCAATAAAGCTGCAGTTTT
GTGTTCATGTATAAATTCAAGATGCTCAATTCCCAAATCTTTTCGGCCTT
CAGAATTGATATCAACAACTTGGCCGGCGACAAGCCCATCAGCTCCGATA
TATTTAGCCAATTCCGCAATAGCTCTGACAATTCTTGCAGGCGAAACCCC
TTTTGTACAAACAGCGATATGTTCAAAAGCATAG
back to top