CF835681

Overview
NameCF835681
Unique NameCF835681
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835681_ssr407 microsatellite CF835681_ssr407:407..436. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1121 contig Csv1_Contig1121:1..781. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835681 vs. ExPASy Swiss-Prot
Match: U49A7_ARATH (UPF0497 membrane protein At5g40300 OS=Arabidopsis thaliana GN=At5g40300 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.731e-19
Identity = 49/112 (43.75%), Postives = 66/112 (58.93%), Query Frame = 2
Query:  458 PTPVKPQISSAAAPDTESAPSNIGSARKILRTNLTILKRAKRDNT----IKKSLLGFRVCGFVFSLVAFSVLAADKDRGWAHDSFYRYKEFSYCLAVNVIVFVYSGVSSFDL 781
            PTP   +  +            +  +R+ LR + +      R++     I+K+LLGFRV  FV  LV+FSV+ +D+D+GWAHDSFY YKEF +CLA NVI FVYSG    DL
Sbjct:   70 PTPSVAKTETPFRVTNGEEEKKVSESRRQLRPSFSSSSSTPRESKWASLIRKALLGFRVIAFVSCLVSFSVMVSDRDKGWAHDSFYNYKEFRFCLAANVIGFVYSGFMICDL 181          
BLAST of CF835681 vs. ExPASy Swiss-Prot
Match: U497A_ARATH (UPF0497 membrane protein At2g36330 OS=Arabidopsis thaliana GN=At2g36330 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.011e-18
Identity = 62/194 (31.96%), Postives = 95/194 (48.97%), Query Frame = 2
Query:  248 PIRLSASPSPETLSPVSEPELEQHTTHNPPLGQEQLHHYNSTPESP-ALDFSHHXXXXXXXXXXXXXKHKQPTPVKPQIS------------SAAAPDTESAPSNIGSARKILRTN---LTILKRAKRDNTIKKSLLGFRVCGFVFSLVAFSVLAADKDRGWAHDSFYRYKEFSYCLAVNVIVFVYSGVSSFDL 781
            P +   S SP ++S    P     T+           H++S+P  P +LD S               ++K P  V+   S                P  +SA   +GS R   + +     IL+R++R+  +K S LGFR+   V +L++FS++AADK +GW+ DSF RYKE+ +CL+VNV+ FVYS   + DL
Sbjct:    4 PAKTMPSMSPSSVSTEKSPP-PSDTSMAIVAFDNSTTHFSSSPSPPHSLDHSSESEKEDAKSKPESRRNKNPGKVEETPSPIVVVHNHNRSVKEVVPTRKSA--RVGSGRSSGQRSGAVSAILRRSRREEVVKFSALGFRLSEVVLALISFSIMAADKTKGWSGDSFDRYKEYRFCLSVNVVAFVYSSFQACDL 194          
BLAST of CF835681 vs. ExPASy Swiss-Prot
Match: U49D7_ARATH (UPF0497 membrane protein At5g62820 OS=Arabidopsis thaliana GN=At5g62820 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.773e-15
Identity = 35/73 (47.95%), Postives = 52/73 (71.23%), Query Frame = 2
Query:  560 TILKRAKRDNTIKKSLLGFRVCGFVFSLVAFSVLAADKDRGWAHDSFYRYKEFSYCLAVNVIVFVYSGVSSFD 778
            T + RA+ D+ +  + LGFR+   +  +++FS++AADK +GW+ DS+ RYKE+ YCLAVNVI FVYS   + D
Sbjct:  135 TTVNRARGDDLVSLTALGFRITEVILCVISFSIMAADKTQGWSGDSYDRYKEYRYCLAVNVIAFVYSAFEACD 207          
The following BLAST results are available for this feature:
BLAST of CF835681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
U49A7_ARATH7.731e-1943.75UPF0497 membrane protein At5g40300 OS=Arabidopsis ... [more]
U497A_ARATH5.011e-1831.96UPF0497 membrane protein At2g36330 OS=Arabidopsis ... [more]
U49D7_ARATH6.773e-1547.95UPF0497 membrane protein At5g62820 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_01L04_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01L04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835681 ID=CF835681; Name=CF835681; organism=Citrus sinensis; type=EST; length=781bp
CAGTTAACCAACAGTCGCATTCATTGGTCACTCCCATCTCCAAAGTCCAA
ACTACCGAACAACGACGATGGAAAAACACGAACAAGAACAAGAACAAGAA
GAGGACCACAACACTGACCGGGACCCGGACCCGAACCCACCATCCAAGAT
GCAATCTCCTCCACGGGAACCAGACCTCGAACCCATAACACTATCCCAAA
ACCCACCACCGGCAACGCTTCCCCCACGCCGCCAACCGGAGCTCCAACCC
ATTAGATTGAGCGCGAGCCCATCACCGGAAACGCTCTCTCCAGTATCCGA
ACCAGAGTTGGAACAGCACACAACCCACAACCCACCGCTGGGACAAGAAC
AGCTCCACCACTACAACTCCACGCCCGAATCACCGGCGTTGGATTTCTCA
CATCACGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGAAGAGAAACA
CAAACAACCAACTCCAGTTAAGCCTCAGATATCTTCGGCTGCAGCGCCGG
ATACAGAAAGTGCTCCTAGTAATATCGGGAGTGCAAGGAAAATTTTGAGG
ACCAACTTGACCATCCTGAAGAGAGCCAAGAGGGACAACACGATCAAAAA
GTCACTGCTCGGGTTTAGGGTTTGTGGGTTTGTGTTTAGCTTGGTTGCTT
TCTCAGTCTTGGCCGCTGATAAAGATAGGGGATGGGCTCATGATTCTTTC
TATCGTTACAAAGAGTTCAGCTACTGTTTGGCAGTGAACGTGATCGTTTT
TGTGTATTCTGGGGTTTCATCATTTGATTTA
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